Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:07:23 (90746): wrapper (7.7.26015): starting
22:07:23 (90746): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 22:07:23] Arguments: --nthreads 8
[2025-07-26 22:07:23] Threads: 8
[2025-07-26 22:07:23] Checking for CVMFS
[2025-07-26 22:07:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 22:07:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 22:07:24] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 22:07:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 22:07:24] 2.13.1.0 2445429 3712 95272 148795 3 188 34725840 40960001 12828 16776704 0 59379552 99.999 130717 60405 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 22:07:24] CVMFS is ok
[2025-07-26 22:07:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 22:07:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 22:07:24] Further information can be found at the LHC@home message board.
[2025-07-26 22:07:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 22:07:24] Checking for apptainer binary...
[2025-07-26 22:07:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 22:07:24] Running /usr/bin/apptainer --version
[2025-07-26 22:07:24] apptainer version 1.4.1-1.el9
[2025-07-26 22:07:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 22:07:24] c-208-40.aglt2.org
[2025-07-26 22:07:24] apptainer works
[2025-07-26 22:07:24] Set ATHENA_PROC_NUMBER=8
[2025-07-26 22:07:24] Set ATHENA_CORE_NUMBER=8
[2025-07-26 22:07:24] Starting ATLAS job with PandaID=6745899316
[2025-07-26 22:07:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 23:08:04]  *** The last 200 lines of the pilot log: ***
[2025-07-26 23:08:04]  mtime=0
[2025-07-26 23:08:04]  protocol_id=None
[2025-07-26 23:08:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 23:08:04]  replicas=None
[2025-07-26 23:08:04]  scope=mc23_13p6TeV
[2025-07-26 23:08:04]  status=None
[2025-07-26 23:08:04]  status_code=0
[2025-07-26 23:08:04]  storage_token=
[2025-07-26 23:08:04]  surl=/tmp/boinchome/slots/8/PanDA_Pilot-6745899316/log.45759361._000058.job.log.tgz.1
[2025-07-26 23:08:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5e/96/log.45759361._000058.job.log.tgz.1
[2025-07-26 23:08:04]  workdir=None
[2025-07-26 23:08:04] ]
[2025-07-26 23:08:04] 2025-07-27 03:07:26,788 | INFO     | transferring file log.45759361._000058.job.log.tgz.1 from /tmp/boinchome/slots/8/PanDA_Pilot-6745899316/log.45759361._000058.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 23:08:04] 2025-07-27 03:07:26,788 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/8/PanDA_Pilot-6745899316/log.45759361._000058.job.log.tgz.1 /tmp/boinchome/slots/8/log.45759361._000058.job
[2025-07-26 23:08:04] 2025-07-27 03:07:26,805 | INFO     | adding to output.list: log.45759361._000058.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5e/96/log.45759361._000058.job.log.tg
[2025-07-26 23:08:04] 2025-07-27 03:07:26,805 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 23:08:04] 2025-07-27 03:07:26,805 | INFO     | summary of transferred files:
[2025-07-26 23:08:04] 2025-07-27 03:07:26,805 | INFO     |  -- lfn=log.45759361._000058.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 23:08:04] 2025-07-27 03:07:26,805 | INFO     | stage-out finished correctly
[2025-07-26 23:08:04] 2025-07-27 03:07:28,014 | WARNING  | process 101853 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 23:08:04] 2025-07-27 03:07:28,014 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6745899316/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:08:04] 2025-07-27 03:07:28,361 | INFO     | number of running child processes to parent process 101853: 1
[2025-07-26 23:08:04] 2025-07-27 03:07:28,361 | INFO     | maximum number of monitored processes: 6
[2025-07-26 23:08:04] 2025-07-27 03:07:29,519 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 23:08:04] 2025-07-27 03:07:29,575 | INFO     | job 6745899316 has state=finished
[2025-07-26 23:08:04] 2025-07-27 03:07:29,575 | INFO     | preparing for final server update for job 6745899316 in state='finished'
[2025-07-26 23:08:04] 2025-07-27 03:07:29,575 | INFO     | this job has now completed (state=finished)
[2025-07-26 23:08:04] 2025-07-27 03:07:29,575 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 23:08:04] 2025-07-27 03:07:29,575 | INFO     | log transfer has been attempted: DONE
[2025-07-26 23:08:04] 2025-07-27 03:07:29,576 | INFO     | job 6745899316 has finished - writing final server update
[2025-07-26 23:08:04] 2025-07-27 03:07:29,576 | INFO     | total number of processed events: 400 (read)
[2025-07-26 23:08:04] 2025-07-27 03:07:29,577 | INFO     | executing command: lscpu
[2025-07-26 23:08:04] 2025-07-27 03:07:29,630 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 23:08:04] 2025-07-27 03:07:30,080 [wrapper] supervise_pilot (15 min periods counter: 5)
[2025-07-26 23:08:04] 2025-07-27 03:07:30,864 | INFO     | monitor loop #262: job 0:6745899316 is in state 'finished'
[2025-07-26 23:08:04] 2025-07-27 03:07:30,865 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 23:08:04] 2025-07-27 03:07:32,931 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 23:08:04] 2025-07-27 03:07:32,937 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3739.384671875003
[2025-07-26 23:08:04] 2025-07-27 03:07:32,950 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6745899316/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:08:04] 2025-07-27 03:07:32,951 | INFO     | extracted standard info from prmon json
[2025-07-26 23:08:04] 2025-07-27 03:07:32,951 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 23:08:04] 2025-07-27 03:07:32,951 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 23:08:04] 2025-07-27 03:07:32,951 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 23:08:04] 2025-07-27 03:07:32,951 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 23:08:04] 2025-07-27 03:07:32,952 | INFO     | fitting pss+swap vs Time
[2025-07-26 23:08:04] 2025-07-27 03:07:32,952 | INFO     | sum of square deviations: 43584073.0
[2025-07-26 23:08:04] 2025-07-27 03:07:32,952 | INFO     | sum of deviations: 613501186.4999999
[2025-07-26 23:08:04] 2025-07-27 03:07:32,952 | INFO     | mean x: 1753583937.5
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | mean y: 2538822.673076923
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | -- intersect: -24681382441.0324
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | intersect: -24681382441.0324
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | chi2: 0.0008884814236304673
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | -- intersect: -24681382441.0324
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | current memory leak: 14.08 B/s (using 52 data points, chi2=0.00)
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | could have reported an average CPU frequency of 3733 MHz (5 samples)
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | ..............................
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | . Timing measurements:
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | . get job = 0 s
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | . initial setup = 2 s
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | . payload setup = 5 s
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | . stage-in = 0 s
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | . payload execution = 3570 s
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | . stage-out = 0 s
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | . log creation = 0 s
[2025-07-26 23:08:04] 2025-07-27 03:07:32,953 | INFO     | ..............................
[2025-07-26 23:08:04] 2025-07-27 03:07:33,008 | INFO     | 
[2025-07-26 23:08:04] 2025-07-27 03:07:33,008 | INFO     | job summary report
[2025-07-26 23:08:04] 2025-07-27 03:07:33,008 | INFO     | --------------------------------------------------
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | PanDA job id: 6745899316
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | task id: 45759361
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | errors: (none)
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | pilot state: finished 
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | transexitcode: 0
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | exeerrorcode: 0
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | exeerrordiag: 
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | exitcode: 0
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | exitmsg: OK
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | cpuconsumptiontime: 26643 s
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | nevents: 400
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | neventsw: 0
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | pid: 101853
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | pgrp: 101853
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | corecount: 8
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | event service: False
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | sizes: {0: 2397483, 4: 2397745, 11: 2397773, 3579: 2423475, 3580: 2432473, 3583: 2432529, 3586: 2432883}
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | --------------------------------------------------
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | 
[2025-07-26 23:08:04] 2025-07-27 03:07:33,009 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-07-26 23:08:04] 2025-07-27 03:07:33,027 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,028 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,028 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,028 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,028 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,028 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,028 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,028 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,028 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,028 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,028 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,028 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,028 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,029 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 23:08:04] 2025-07-27 03:07:33,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,029 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 23:08:04] 2025-07-27 03:07:33,029 | INFO     | job 6745899316 has completed (purged errors)
[2025-07-26 23:08:04] 2025-07-27 03:07:33,029 | INFO     | overall cleanup function is called
[2025-07-26 23:08:04] 2025-07-27 03:07:34,036 | INFO     | --- collectZombieJob: --- 10, [101853]
[2025-07-26 23:08:04] 2025-07-27 03:07:34,036 | INFO     | zombie collector waiting for pid 101853
[2025-07-26 23:08:04] 2025-07-27 03:07:34,036 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 23:08:04] 2025-07-27 03:07:34,036 | INFO     | collected zombie processes
[2025-07-26 23:08:04] 2025-07-27 03:07:34,036 | INFO     | will attempt to kill all subprocesses of pid=101853
[2025-07-26 23:08:04] 2025-07-27 03:07:34,376 | INFO     | process IDs to be killed: [101853] (in reverse order)
[2025-07-26 23:08:04] 2025-07-27 03:07:34,489 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 23:08:04] 2025-07-27 03:07:34,490 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 23:08:04] 2025-07-27 03:07:34,505 | INFO     | did not find any defunct processes belonging to 101853
[2025-07-26 23:08:04] 2025-07-27 03:07:34,518 | INFO     | did not find any defunct processes belonging to 101853
[2025-07-26 23:08:04] 2025-07-27 03:07:34,519 | INFO     | ready for new job
[2025-07-26 23:08:04] 2025-07-27 03:07:34,519 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 23:08:04] 2025-07-27 03:07:34,520 | INFO     | ***************************************
[2025-07-26 23:08:04] 2025-07-27 03:07:34,520 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 23:08:04] 2025-07-27 03:07:34,520 | INFO     | ***************************************
[2025-07-26 23:08:04] 2025-07-27 03:07:34,520 | INFO     | 
[2025-07-26 23:08:04] 2025-07-27 03:07:34,525 | INFO     | architecture information:
[2025-07-26 23:08:04] 2025-07-27 03:07:34,525 | INFO     | executing command: cat /etc/os-release
[2025-07-26 23:08:04] 2025-07-27 03:07:34,540 | INFO     | cat /etc/os-release:
[2025-07-26 23:08:04] NAME="CentOS Linux"
[2025-07-26 23:08:04] VERSION="7 (Core)"
[2025-07-26 23:08:04] ID="centos"
[2025-07-26 23:08:04] ID_LIKE="rhel fedora"
[2025-07-26 23:08:04] VERSION_ID="7"
[2025-07-26 23:08:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 23:08:04] ANSI_COLOR="0;31"
[2025-07-26 23:08:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 23:08:04] HOME_URL="https://www.centos.org/"
[2025-07-26 23:08:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 23:08:04] 
[2025-07-26 23:08:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 23:08:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 23:08:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 23:08:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 23:08:04] 
[2025-07-26 23:08:04] 2025-07-27 03:07:34,540 | INFO     | ***************************************
[2025-07-26 23:08:04] 2025-07-27 03:07:35,042 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-07-26 23:08:04] 2025-07-27 03:07:35,059 | INFO     | sufficient remaining disk space (164553031680 B)
[2025-07-26 23:08:04] 2025-07-27 03:07:35,060 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 23:08:04] 2025-07-27 03:07:35,060 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 23:08:04] 2025-07-27 03:07:35,060 | INFO     | update_server=False
[2025-07-26 23:08:04] 2025-07-27 03:07:35,060 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 23:08:04] 2025-07-27 03:07:35,060 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:08:04] 2025-07-27 03:07:35,060 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 23:08:04] 2025-07-27 03:07:35,061 | INFO     | aborting loop
[2025-07-26 23:08:04] 2025-07-27 03:07:35,480 | INFO     | all job control threads have been joined
[2025-07-26 23:08:04] 2025-07-27 03:07:35,580 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 23:08:04] 2025-07-27 03:07:35,909 | INFO     | all data control threads have been joined
[2025-07-26 23:08:04] 2025-07-27 03:07:36,065 | INFO     | [job] retrieve thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:36,066 | INFO     | [job] job monitor thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:36,256 | INFO     | all payload control threads have been joined
[2025-07-26 23:08:04] 2025-07-27 03:07:36,485 | INFO     | [job] control thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:36,602 | INFO     | [job] validate thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:36,619 | INFO     | [payload] validate_post thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:36,810 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:36,817 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:36,913 | INFO     | [data] control thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:37,066 | INFO     | [data] copytool_out thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:37,155 | INFO     | [payload] failed_post thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:37,261 | INFO     | [payload] control thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:37,319 | INFO     | [data] copytool_in thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:37,462 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:38,018 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:08:04] 2025-07-27 03:07:39,023 | INFO     | [job] queue monitor thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:39,586 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:45,361 | INFO     | job.realtimelogging is not enabled
[2025-07-26 23:08:04] 2025-07-27 03:07:46,363 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 23:08:04] 2025-07-27 03:07:47,144 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139722778531648)>', '<ExcThread(monitor, started 139722416428800)>']
[2025-07-26 23:08:04] 2025-07-27 03:07:52,167 | INFO     | all workflow threads have been joined
[2025-07-26 23:08:04] 2025-07-27 03:07:52,168 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 23:08:04] 2025-07-27 03:07:52,168 | INFO     | traces error code: 0
[2025-07-26 23:08:04] 2025-07-27 03:07:52,168 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 23:08:04] 2025-07-27 03:08:04,662 | INFO     | PID=94401 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 23:08:04] 2025-07-27 03:08:04,662 | INFO     | .. there are 16 such processes running
[2025-07-26 23:08:04] 2025-07-27 03:08:04,663 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 23:08:04] 2025-07-27 03:08:04,663 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 23:08:04] 2025-07-27 03:08:04,663 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 23:08:04] 2025-07-27 03:08:04,663 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 23:08:04] 2025-07-27 03:08:04,663 | INFO     | [monitor] control thread has ended
[2025-07-26 23:08:04] 2025-07-27 03:08:04,762 [wrapper] ==== pilot stdout END ====
[2025-07-26 23:08:04] 2025-07-27 03:08:04,765 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 23:08:04] 2025-07-27 03:08:04,767 [wrapper] pilotpid: 94401
[2025-07-26 23:08:04] 2025-07-27 03:08:04,770 [wrapper] Pilot exit status: 0
[2025-07-26 23:08:04] 2025-07-27 03:08:04,779 [wrapper] pandaids: 6745899316
[2025-07-26 23:08:04] 2025-07-27 03:08:04,858 [wrapper] cleanup supervisor_pilot  495863 94402
[2025-07-26 23:08:04] 2025-07-27 03:08:04,861 [wrapper] Test setup, not cleaning
[2025-07-26 23:08:04] 2025-07-27 03:08:04,864 [wrapper] apfmon messages muted
[2025-07-26 23:08:04] 2025-07-27 03:08:04,866 [wrapper] ==== wrapper stdout END ====
[2025-07-26 23:08:04] 2025-07-27 03:08:04,869 [wrapper] ==== wrapper stderr END ====
[2025-07-26 23:08:04]  *** Error codes and diagnostics ***
[2025-07-26 23:08:04]     "exeErrorCode": 0,
[2025-07-26 23:08:04]     "exeErrorDiag": "",
[2025-07-26 23:08:04]     "pilotErrorCode": 0,
[2025-07-26 23:08:04]     "pilotErrorDiag": "",
[2025-07-26 23:08:04]  *** Listing of results directory ***
[2025-07-26 23:08:04] total 417084
[2025-07-26 23:08:04] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 19:40 pilot3.tar.gz
[2025-07-26 23:08:04] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 19:47 queuedata.json
[2025-07-26 23:08:04] -rwx------. 1 boincer umatlas     36292 Jul 26 19:48 runpilot2-wrapper.sh
[2025-07-26 23:08:04] -rw-r--r--. 1 boincer umatlas       100 Jul 26 22:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 23:08:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 22:07 run_atlas
[2025-07-26 23:08:04] -rw-r--r--. 1 boincer umatlas       105 Jul 26 22:07 job.xml
[2025-07-26 23:08:04] -rw-r--r--. 2 boincer umatlas 246913944 Jul 26 22:07 EVNT.45759358._000003.pool.root.1
[2025-07-26 23:08:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 22:07 start_atlas.sh
[2025-07-26 23:08:04] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 22:07 shared
[2025-07-26 23:08:04] -rw-r--r--. 2 boincer umatlas    542889 Jul 26 22:07 input.tar.gz
[2025-07-26 23:08:04] -rw-r--r--. 1 boincer umatlas         0 Jul 26 22:07 boinc_lockfile
[2025-07-26 23:08:04] -rw-r--r--. 1 boincer umatlas      2576 Jul 26 22:07 pandaJob.out
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas    980125 Jul 26 22:07 agis_schedconf.cvmfs.json
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas   1593052 Jul 26 22:07 agis_ddmendpoints.agis.ALL.json
[2025-07-26 23:08:04] drwx------. 4 boincer umatlas      4096 Jul 26 22:07 pilot3
[2025-07-26 23:08:04] -rw-r--r--. 1 boincer umatlas      7172 Jul 26 23:04 init_data.xml
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas 175005125 Jul 26 23:07 HITS.45759361._000058.pool.root.1
[2025-07-26 23:08:04] -rw-r--r--. 1 boincer umatlas       529 Jul 26 23:07 boinc_task_state.xml
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas      1030 Jul 26 23:07 memory_monitor_summary.json
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas    288060 Jul 26 23:07 log.45759361._000058.job.log.tgz.1
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas      7759 Jul 26 23:07 heartbeat.json
[2025-07-26 23:08:04] -rw-r--r--. 1 boincer umatlas        27 Jul 26 23:07 wrapper_checkpoint.txt
[2025-07-26 23:08:04] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 23:07 boinc_mmap_file
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas       821 Jul 26 23:08 pilotlog.txt
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas        95 Jul 26 23:08 pilot_heartbeat.json
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas    363514 Jul 26 23:08 log.45759361._000058.job.log.1
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas       357 Jul 26 23:08 output.list
[2025-07-26 23:08:04] -rw-r--r--. 1 boincer umatlas       620 Jul 26 23:08 runtime_log
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas    665600 Jul 26 23:08 result.tar.gz
[2025-07-26 23:08:04] -rw-r--r--. 1 boincer umatlas      8660 Jul 26 23:08 runtime_log.err
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas       651 Jul 26 23:08 FPTMDmpn3z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgVTLDmuv93sn.diag
[2025-07-26 23:08:04] -rw-r--r--. 1 boincer umatlas     21680 Jul 26 23:08 stderr.txt
[2025-07-26 23:08:04] HITS file was successfully produced:
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas 175005125 Jul 26 23:07 shared/HITS.pool.root.1
[2025-07-26 23:08:04]  *** Contents of shared directory: ***
[2025-07-26 23:08:04] total 413240
[2025-07-26 23:08:04] -rw-r--r--. 2 boincer umatlas 246913944 Jul 26 22:07 ATLAS.root_0
[2025-07-26 23:08:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 22:07 start_atlas.sh
[2025-07-26 23:08:04] -rw-r--r--. 2 boincer umatlas    542889 Jul 26 22:07 input.tar.gz
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas 175005125 Jul 26 23:07 HITS.pool.root.1
[2025-07-26 23:08:04] -rw-------. 1 boincer umatlas    665600 Jul 26 23:08 result.tar.gz
23:08:06 (90746): run_atlas exited; CPU time 26741.560337
23:08:06 (90746): called boinc_finish(0)

</stderr_txt>
]]>

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