Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:05:48 (7008): wrapper (7.7.26015): starting
22:05:48 (7008): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 22:05:48] Arguments: --nthreads 8
[2025-07-26 22:05:48] Threads: 8
[2025-07-26 22:05:48] Checking for CVMFS
[2025-07-26 22:05:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 22:05:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 22:05:48] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 22:05:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 22:05:48] 2.11.2.0 3213 516316 242908 148795 2 188 19937423 20275200 917 130560 0 179129006 99.988 22512806 19704 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 22:05:48] CVMFS is ok
[2025-07-26 22:05:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 22:05:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 22:05:48] Further information can be found at the LHC@home message board.
[2025-07-26 22:05:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 22:05:48] Checking for apptainer binary...
[2025-07-26 22:05:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 22:05:48] Running /usr/bin/apptainer --version
[2025-07-26 22:05:49] apptainer version 1.3.2-1.el7
[2025-07-26 22:05:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 22:05:49] c-205-38.aglt2.org
[2025-07-26 22:05:49] apptainer works
[2025-07-26 22:05:49] Set ATHENA_PROC_NUMBER=8
[2025-07-26 22:05:49] Set ATHENA_CORE_NUMBER=8
[2025-07-26 22:05:49] Starting ATLAS job with PandaID=6745735806
[2025-07-26 22:05:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 23:11:59]  *** The last 200 lines of the pilot log: ***
[2025-07-26 23:11:59]  mtime=0
[2025-07-26 23:11:59]  protocol_id=None
[2025-07-26 23:11:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 23:11:59]  replicas=None
[2025-07-26 23:11:59]  scope=mc23_13p6TeV
[2025-07-26 23:11:59]  status=None
[2025-07-26 23:11:59]  status_code=0
[2025-07-26 23:11:59]  storage_token=
[2025-07-26 23:11:59]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745735806/log.45743349._044520.job.log.tgz.1
[2025-07-26 23:11:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/55/log.45743349._044520.job.log.tgz.1
[2025-07-26 23:11:59]  workdir=None
[2025-07-26 23:11:59] ]
[2025-07-26 23:11:59] 2025-07-27 03:11:21,250 | INFO     | transferring file log.45743349._044520.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745735806/log.45743349._044520.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 23:11:59] 2025-07-27 03:11:21,250 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745735806/log.45743349._044520.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._044520.job
[2025-07-26 23:11:59] 2025-07-27 03:11:21,266 | INFO     | adding to output.list: log.45743349._044520.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a6/55/log.45743349._044520.job.log.tg
[2025-07-26 23:11:59] 2025-07-27 03:11:21,267 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 23:11:59] 2025-07-27 03:11:21,267 | INFO     | summary of transferred files:
[2025-07-26 23:11:59] 2025-07-27 03:11:21,267 | INFO     |  -- lfn=log.45743349._044520.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 23:11:59] 2025-07-27 03:11:21,267 | INFO     | stage-out finished correctly
[2025-07-26 23:11:59] 2025-07-27 03:11:22,701 | INFO     | PID=10628 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 23:11:59] 2025-07-27 03:11:22,701 | INFO     | .. there are 2 such processes running
[2025-07-26 23:11:59] 2025-07-27 03:11:23,924 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 23:11:59] 2025-07-27 03:11:23,996 | INFO     | job 6745735806 has state=finished
[2025-07-26 23:11:59] 2025-07-27 03:11:23,996 | INFO     | preparing for final server update for job 6745735806 in state='finished'
[2025-07-26 23:11:59] 2025-07-27 03:11:24,127 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-26 23:11:59] 2025-07-27 03:11:24,127 | INFO     | this job has now completed (state=finished)
[2025-07-26 23:11:59] 2025-07-27 03:11:24,127 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 23:11:59] 2025-07-27 03:11:24,128 | INFO     | log transfer has been attempted: DONE
[2025-07-26 23:11:59] 2025-07-27 03:11:24,128 | INFO     | job 6745735806 has finished - writing final server update
[2025-07-26 23:11:59] 2025-07-27 03:11:24,128 | INFO     | total number of processed events: 400 (read)
[2025-07-26 23:11:59] 2025-07-27 03:11:24,129 | INFO     | executing command: lscpu
[2025-07-26 23:11:59] 2025-07-27 03:11:24,152 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 23:11:59] 2025-07-27 03:11:24,755 | WARNING  | process 17119 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 23:11:59] 2025-07-27 03:11:24,756 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745735806/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:11:59] 2025-07-27 03:11:24,804 | INFO     | number of running child processes to parent process 17119: 1
[2025-07-26 23:11:59] 2025-07-27 03:11:24,804 | INFO     | maximum number of monitored processes: 6
[2025-07-26 23:11:59] 2025-07-27 03:11:26,420 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 23:11:59] 2025-07-27 03:11:26,423 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2648.68125
[2025-07-26 23:11:59] 2025-07-27 03:11:26,426 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745735806/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:11:59] 2025-07-27 03:11:26,427 | INFO     | extracted standard info from prmon json
[2025-07-26 23:11:59] 2025-07-27 03:11:26,427 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 23:11:59] 2025-07-27 03:11:26,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 23:11:59] 2025-07-27 03:11:26,428 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 23:11:59] 2025-07-27 03:11:26,428 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 23:11:59] 2025-07-27 03:11:26,429 | INFO     | fitting pss+swap vs Time
[2025-07-26 23:11:59] 2025-07-27 03:11:26,430 | INFO     | sum of square deviations: 57407588.0
[2025-07-26 23:11:59] 2025-07-27 03:11:26,430 | INFO     | sum of deviations: 473474680.0
[2025-07-26 23:11:59] 2025-07-27 03:11:26,430 | INFO     | mean x: 1753583990.0
[2025-07-26 23:11:59] 2025-07-27 03:11:26,430 | INFO     | mean y: 2521230.1578947366
[2025-07-26 23:11:59] 2025-07-27 03:11:26,430 | INFO     | -- intersect: -14460333724.110054
[2025-07-26 23:11:59] 2025-07-27 03:11:26,430 | INFO     | intersect: -14460333724.110054
[2025-07-26 23:11:59] 2025-07-27 03:11:26,430 | INFO     | chi2: 0.002151297874618982
[2025-07-26 23:11:59] 2025-07-27 03:11:26,431 | INFO     | -- intersect: -14460333724.110054
[2025-07-26 23:11:59] 2025-07-27 03:11:26,431 | INFO     | current memory leak: 8.25 B/s (using 57 data points, chi2=0.00)
[2025-07-26 23:11:59] 2025-07-27 03:11:26,431 | INFO     | could have reported an average CPU frequency of 3017 MHz (6 samples)
[2025-07-26 23:11:59] 2025-07-27 03:11:26,431 | INFO     | ..............................
[2025-07-26 23:11:59] 2025-07-27 03:11:26,431 | INFO     | . Timing measurements:
[2025-07-26 23:11:59] 2025-07-27 03:11:26,431 | INFO     | . get job = 0 s
[2025-07-26 23:11:59] 2025-07-27 03:11:26,431 | INFO     | . initial setup = 2 s
[2025-07-26 23:11:59] 2025-07-27 03:11:26,432 | INFO     | . payload setup = 4 s
[2025-07-26 23:11:59] 2025-07-27 03:11:26,432 | INFO     | . stage-in = 0 s
[2025-07-26 23:11:59] 2025-07-27 03:11:26,432 | INFO     | . payload execution = 3902 s
[2025-07-26 23:11:59] 2025-07-27 03:11:26,432 | INFO     | . stage-out = 0 s
[2025-07-26 23:11:59] 2025-07-27 03:11:26,432 | INFO     | . log creation = 0 s
[2025-07-26 23:11:59] 2025-07-27 03:11:26,432 | INFO     | ..............................
[2025-07-26 23:11:59] 2025-07-27 03:11:26,503 | INFO     | 
[2025-07-26 23:11:59] 2025-07-27 03:11:26,503 | INFO     | job summary report
[2025-07-26 23:11:59] 2025-07-27 03:11:26,503 | INFO     | --------------------------------------------------
[2025-07-26 23:11:59] 2025-07-27 03:11:26,504 | INFO     | PanDA job id: 6745735806
[2025-07-26 23:11:59] 2025-07-27 03:11:26,504 | INFO     | task id: 45743349
[2025-07-26 23:11:59] 2025-07-27 03:11:26,504 | INFO     | errors: (none)
[2025-07-26 23:11:59] 2025-07-27 03:11:26,504 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 23:11:59] 2025-07-27 03:11:26,504 | INFO     | pilot state: finished 
[2025-07-26 23:11:59] 2025-07-27 03:11:26,504 | INFO     | transexitcode: 0
[2025-07-26 23:11:59] 2025-07-27 03:11:26,504 | INFO     | exeerrorcode: 0
[2025-07-26 23:11:59] 2025-07-27 03:11:26,504 | INFO     | exeerrordiag: 
[2025-07-26 23:11:59] 2025-07-27 03:11:26,504 | INFO     | exitcode: 0
[2025-07-26 23:11:59] 2025-07-27 03:11:26,505 | INFO     | exitmsg: OK
[2025-07-26 23:11:59] 2025-07-27 03:11:26,505 | INFO     | cpuconsumptiontime: 28040 s
[2025-07-26 23:11:59] 2025-07-27 03:11:26,505 | INFO     | nevents: 400
[2025-07-26 23:11:59] 2025-07-27 03:11:26,505 | INFO     | neventsw: 0
[2025-07-26 23:11:59] 2025-07-27 03:11:26,505 | INFO     | pid: 17119
[2025-07-26 23:11:59] 2025-07-27 03:11:26,505 | INFO     | pgrp: 17119
[2025-07-26 23:11:59] 2025-07-27 03:11:26,505 | INFO     | corecount: 8
[2025-07-26 23:11:59] 2025-07-27 03:11:26,505 | INFO     | event service: False
[2025-07-26 23:11:59] 2025-07-27 03:11:26,505 | INFO     | sizes: {0: 2397361, 1: 2397475, 3: 2397765, 11: 2397793, 3911: 2423768, 3912: 2432766, 3915: 2432950, 3917: 2433144}
[2025-07-26 23:11:59] 2025-07-27 03:11:26,506 | INFO     | --------------------------------------------------
[2025-07-26 23:11:59] 2025-07-27 03:11:26,506 | INFO     | 
[2025-07-26 23:11:59] 2025-07-27 03:11:26,506 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 23:11:59] 2025-07-27 03:11:26,527 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,527 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,527 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,527 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,527 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,527 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,528 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,528 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,528 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,528 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,528 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,528 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,529 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,529 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,529 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,529 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,529 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,529 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 23:11:59] 2025-07-27 03:11:26,529 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,529 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 23:11:59] 2025-07-27 03:11:26,530 | INFO     | job 6745735806 has completed (purged errors)
[2025-07-26 23:11:59] 2025-07-27 03:11:26,530 | INFO     | overall cleanup function is called
[2025-07-26 23:11:59] 2025-07-27 03:11:27,538 | INFO     | --- collectZombieJob: --- 10, [17119]
[2025-07-26 23:11:59] 2025-07-27 03:11:27,538 | INFO     | zombie collector waiting for pid 17119
[2025-07-26 23:11:59] 2025-07-27 03:11:27,538 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 23:11:59] 2025-07-27 03:11:27,538 | INFO     | collected zombie processes
[2025-07-26 23:11:59] 2025-07-27 03:11:27,539 | INFO     | will attempt to kill all subprocesses of pid=17119
[2025-07-26 23:11:59] 2025-07-27 03:11:27,639 | INFO     | process IDs to be killed: [17119] (in reverse order)
[2025-07-26 23:11:59] 2025-07-27 03:11:27,676 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 23:11:59] 2025-07-27 03:11:27,676 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 23:11:59] 2025-07-27 03:11:27,679 | INFO     | did not find any defunct processes belonging to 17119
[2025-07-26 23:11:59] 2025-07-27 03:11:27,682 | INFO     | did not find any defunct processes belonging to 17119
[2025-07-26 23:11:59] 2025-07-27 03:11:27,682 | INFO     | ready for new job
[2025-07-26 23:11:59] 2025-07-27 03:11:27,682 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 23:11:59] 2025-07-27 03:11:27,684 | INFO     | ***************************************
[2025-07-26 23:11:59] 2025-07-27 03:11:27,684 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 23:11:59] 2025-07-27 03:11:27,684 | INFO     | ***************************************
[2025-07-26 23:11:59] 2025-07-27 03:11:27,684 | INFO     | 
[2025-07-26 23:11:59] 2025-07-27 03:11:27,685 | INFO     | architecture information:
[2025-07-26 23:11:59] 2025-07-27 03:11:27,686 | INFO     | executing command: cat /etc/os-release
[2025-07-26 23:11:59] 2025-07-27 03:11:27,698 | INFO     | cat /etc/os-release:
[2025-07-26 23:11:59] NAME="CentOS Linux"
[2025-07-26 23:11:59] VERSION="7 (Core)"
[2025-07-26 23:11:59] ID="centos"
[2025-07-26 23:11:59] ID_LIKE="rhel fedora"
[2025-07-26 23:11:59] VERSION_ID="7"
[2025-07-26 23:11:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 23:11:59] ANSI_COLOR="0;31"
[2025-07-26 23:11:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 23:11:59] HOME_URL="https://www.centos.org/"
[2025-07-26 23:11:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 23:11:59] 
[2025-07-26 23:11:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 23:11:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 23:11:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 23:11:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 23:11:59] 
[2025-07-26 23:11:59] 2025-07-27 03:11:27,698 | INFO     | ***************************************
[2025-07-26 23:11:59] 2025-07-27 03:11:28,201 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 23:11:59] 2025-07-27 03:11:28,217 | INFO     | sufficient remaining disk space (32634830848 B)
[2025-07-26 23:11:59] 2025-07-27 03:11:28,218 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 23:11:59] 2025-07-27 03:11:28,218 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 23:11:59] 2025-07-27 03:11:28,218 | INFO     | update_server=False
[2025-07-26 23:11:59] 2025-07-27 03:11:28,218 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 23:11:59] 2025-07-27 03:11:28,218 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:11:59] 2025-07-27 03:11:28,312 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:11:59] 2025-07-27 03:11:28,313 | INFO     | aborting loop
[2025-07-26 23:11:59] 2025-07-27 03:11:28,373 | INFO     | all payload control threads have been joined
[2025-07-26 23:11:59] 2025-07-27 03:11:28,744 | INFO     | all data control threads have been joined
[2025-07-26 23:11:59] 2025-07-27 03:11:29,187 | INFO     | all job control threads have been joined
[2025-07-26 23:11:59] 2025-07-27 03:11:29,223 | INFO     | [job] queue monitor thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:29,224 | INFO     | [job] retrieve thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:29,298 | INFO     | [payload] failed_post thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:29,317 | INFO     | [job] job monitor thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:29,320 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 23:11:59] 2025-07-27 03:11:29,378 | INFO     | [payload] control thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:29,693 | INFO     | [payload] validate_post thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:29,750 | INFO     | [data] control thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:30,005 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 23:11:59] 2025-07-27 03:11:30,157 | INFO     | [data] copytool_in thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:30,158 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:30,193 | INFO     | [job] control thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:30,264 | INFO     | [job] validate thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:30,707 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:30,724 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:31,326 | INFO     | [data] copytool_out thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:34,011 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:39,049 | INFO     | job.realtimelogging is not enabled
[2025-07-26 23:11:59] 2025-07-27 03:11:40,054 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 23:11:59] 2025-07-27 03:11:41,696 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140718512760640)>', '<ExcThread(monitor, started 140717942888192)>']
[2025-07-26 23:11:59] 2025-07-27 03:11:46,721 | INFO     | all workflow threads have been joined
[2025-07-26 23:11:59] 2025-07-27 03:11:46,721 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 23:11:59] 2025-07-27 03:11:46,722 | INFO     | traces error code: 0
[2025-07-26 23:11:59] 2025-07-27 03:11:46,722 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 23:11:59] 2025-07-27 03:11:58,901 | INFO     | PID=10628 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 23:11:59] 2025-07-27 03:11:58,901 | INFO     | .. there are 2 such processes running
[2025-07-26 23:11:59] 2025-07-27 03:11:58,902 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 23:11:59] 2025-07-27 03:11:58,902 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 23:11:59] 2025-07-27 03:11:58,902 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 23:11:59] 2025-07-27 03:11:58,902 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 23:11:59] 2025-07-27 03:11:58,902 | INFO     | [monitor] control thread has ended
[2025-07-26 23:11:59] 2025-07-27 03:11:58,995 [wrapper] ==== pilot stdout END ====
[2025-07-26 23:11:59] 2025-07-27 03:11:58,999 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 23:11:59] 2025-07-27 03:11:59,003 [wrapper] pilotpid: 10628
[2025-07-26 23:11:59] 2025-07-27 03:11:59,006 [wrapper] Pilot exit status: 0
[2025-07-26 23:11:59] 2025-07-27 03:11:59,017 [wrapper] pandaids: 6745735806
[2025-07-26 23:11:59] 2025-07-27 03:11:59,040 [wrapper] cleanup supervisor_pilot 28405 10629
[2025-07-26 23:11:59] 2025-07-27 03:11:59,043 [wrapper] Test setup, not cleaning
[2025-07-26 23:11:59] 2025-07-27 03:11:59,045 [wrapper] apfmon messages muted
[2025-07-26 23:11:59] 2025-07-27 03:11:59,048 [wrapper] ==== wrapper stdout END ====
[2025-07-26 23:11:59] 2025-07-27 03:11:59,050 [wrapper] ==== wrapper stderr END ====
[2025-07-26 23:11:59]  *** Error codes and diagnostics ***
[2025-07-26 23:11:59]     "exeErrorCode": 0,
[2025-07-26 23:11:59]     "exeErrorDiag": "",
[2025-07-26 23:11:59]     "pilotErrorCode": 0,
[2025-07-26 23:11:59]     "pilotErrorDiag": "",
[2025-07-26 23:11:59]  *** Listing of results directory ***
[2025-07-26 23:11:59] total 436368
[2025-07-26 23:11:59] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 17:12 pilot3.tar.gz
[2025-07-26 23:11:59] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 17:13 queuedata.json
[2025-07-26 23:11:59] -rwx------ 1 boincer umatlas     36292 Jul 26 17:16 runpilot2-wrapper.sh
[2025-07-26 23:11:59] -rw-r--r-- 1 boincer umatlas       100 Jul 26 22:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 23:11:59] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 22:05 run_atlas
[2025-07-26 23:11:59] -rw-r--r-- 1 boincer umatlas       105 Jul 26 22:05 job.xml
[2025-07-26 23:11:59] -rw-r--r-- 2 boincer umatlas 228797797 Jul 26 22:05 EVNT.45743347._002550.pool.root.1
[2025-07-26 23:11:59] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 22:05 start_atlas.sh
[2025-07-26 23:11:59] drwxrwx--x 2 boincer umatlas      4096 Jul 26 22:05 shared
[2025-07-26 23:11:59] -rw-r--r-- 2 boincer umatlas    542895 Jul 26 22:05 input.tar.gz
[2025-07-26 23:11:59] -rw-r--r-- 1 boincer umatlas         0 Jul 26 22:05 boinc_lockfile
[2025-07-26 23:11:59] -rw-r--r-- 1 boincer umatlas      2563 Jul 26 22:05 pandaJob.out
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas    980125 Jul 26 22:05 agis_schedconf.cvmfs.json
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas   1593052 Jul 26 22:05 agis_ddmendpoints.agis.ALL.json
[2025-07-26 23:11:59] drwx------ 4 boincer umatlas      4096 Jul 26 22:05 pilot3
[2025-07-26 23:11:59] -rw-r--r-- 1 boincer umatlas      6050 Jul 26 23:09 init_data.xml
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas 212767801 Jul 26 23:10 HITS.45743349._044520.pool.root.1
[2025-07-26 23:11:59] -rw-r--r-- 1 boincer umatlas       529 Jul 26 23:11 boinc_task_state.xml
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas      1042 Jul 26 23:11 memory_monitor_summary.json
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas    299552 Jul 26 23:11 log.45743349._044520.job.log.tgz.1
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas      7831 Jul 26 23:11 heartbeat.json
[2025-07-26 23:11:59] -rw-r--r-- 1 boincer umatlas      8192 Jul 26 23:11 boinc_mmap_file
[2025-07-26 23:11:59] -rw-r--r-- 1 boincer umatlas        27 Jul 26 23:11 wrapper_checkpoint.txt
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas        95 Jul 26 23:11 pilot_heartbeat.json
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas       820 Jul 26 23:11 pilotlog.txt
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas    402718 Jul 26 23:11 log.45743349._044520.job.log.1
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas       357 Jul 26 23:11 output.list
[2025-07-26 23:11:59] -rw-r--r-- 1 boincer umatlas       620 Jul 26 23:11 runtime_log
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas    716800 Jul 26 23:11 result.tar.gz
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas       657 Jul 26 23:11 EbkNDmLR1z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMATLDmpC1AWo.diag
[2025-07-26 23:11:59] -rw-r--r-- 1 boincer umatlas      8660 Jul 26 23:11 runtime_log.err
[2025-07-26 23:11:59] -rw-r--r-- 1 boincer umatlas     21748 Jul 26 23:11 stderr.txt
[2025-07-26 23:11:59] HITS file was successfully produced:
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas 212767801 Jul 26 23:10 shared/HITS.pool.root.1
[2025-07-26 23:11:59]  *** Contents of shared directory: ***
[2025-07-26 23:11:59] total 432472
[2025-07-26 23:11:59] -rw-r--r-- 2 boincer umatlas 228797797 Jul 26 22:05 ATLAS.root_0
[2025-07-26 23:11:59] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 22:05 start_atlas.sh
[2025-07-26 23:11:59] -rw-r--r-- 2 boincer umatlas    542895 Jul 26 22:05 input.tar.gz
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas 212767801 Jul 26 23:10 HITS.pool.root.1
[2025-07-26 23:11:59] -rw------- 1 boincer umatlas    716800 Jul 26 23:11 result.tar.gz
23:12:00 (7008): run_atlas exited; CPU time 27993.191349
23:12:00 (7008): called boinc_finish(0)

</stderr_txt>
]]>

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