Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:07:00 (152463): wrapper (7.7.26015): starting
22:07:00 (152463): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 22:07:00] Arguments: --nthreads 8
[2025-07-26 22:07:00] Threads: 8
[2025-07-26 22:07:00] Checking for CVMFS
[2025-07-26 22:07:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 22:07:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 22:07:00] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 22:07:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 22:07:01] 2.13.0.0 100689 26612 287052 148795 3 521 31809294 32935937 18491 16776704 0 194516283 99.565 264016045 20302 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 22:07:01] CVMFS is ok
[2025-07-26 22:07:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 22:07:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 22:07:01] Further information can be found at the LHC@home message board.
[2025-07-26 22:07:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 22:07:01] Checking for apptainer binary...
[2025-07-26 22:07:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 22:07:01] Running /usr/bin/apptainer --version
[2025-07-26 22:07:01] apptainer version 1.4.1-1.el9
[2025-07-26 22:07:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 22:07:01] c7-2-38.aglt2.org
[2025-07-26 22:07:01] apptainer works
[2025-07-26 22:07:01] Set ATHENA_PROC_NUMBER=8
[2025-07-26 22:07:01] Set ATHENA_CORE_NUMBER=8
[2025-07-26 22:07:01] Starting ATLAS job with PandaID=6745735720
[2025-07-26 22:07:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:09:57 (677375): wrapper (7.7.26015): starting
23:09:57 (677375): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 23:09:57] Arguments: --nthreads 8
[2025-07-26 23:09:57] Threads: 8
[2025-07-26 23:09:57] This job has been restarted, cleaning up previous attempt
[2025-07-26 23:09:57] Checking for CVMFS
[2025-07-26 23:09:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 23:09:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 23:09:58] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 23:09:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 23:09:58] 2.13.0.0 100689 26675 282376 148797 1 540 24436964 32935937 19561 16776704 0 194900807 99.564 265108935 20279 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 23:09:58] CVMFS is ok
[2025-07-26 23:09:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 23:09:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 23:09:58] Further information can be found at the LHC@home message board.
[2025-07-26 23:09:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 23:09:58] Checking for apptainer binary...
[2025-07-26 23:09:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 23:09:58] Running /usr/bin/apptainer --version
[2025-07-26 23:09:58] apptainer version 1.4.1-1.el9
[2025-07-26 23:09:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 23:09:58] c7-2-38.aglt2.org
[2025-07-26 23:09:58] apptainer works
[2025-07-26 23:09:58] Set ATHENA_PROC_NUMBER=8
[2025-07-26 23:09:58] Set ATHENA_CORE_NUMBER=8
[2025-07-26 23:09:58] Starting ATLAS job with PandaID=6745735720
[2025-07-26 23:09:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 01:18:38]  *** The last 200 lines of the pilot log: ***
[2025-07-27 01:18:38] 2025-07-27 05:17:58,489 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 01:18:38] 2025-07-27 05:18:00,993 | INFO     | monitor loop #543: job 0:6745735720 is in state 'finished'
[2025-07-27 01:18:38] 2025-07-27 05:18:00,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 01:18:38] 2025-07-27 05:18:02,769 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 01:18:38] 2025-07-27 05:18:02,783 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3129.350385416667
[2025-07-27 01:18:38] 2025-07-27 05:18:02,800 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745735720/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 01:18:38] 2025-07-27 05:18:02,802 | INFO     | extracted standard info from prmon json
[2025-07-27 01:18:38] 2025-07-27 05:18:02,803 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 01:18:38] 2025-07-27 05:18:02,803 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 01:18:38] 2025-07-27 05:18:02,803 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 01:18:38] 2025-07-27 05:18:02,803 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 01:18:38] 2025-07-27 05:18:02,805 | INFO     | fitting pss+swap vs Time
[2025-07-27 01:18:38] 2025-07-27 05:18:02,806 | INFO     | sum of square deviations: 605592750.0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,808 | INFO     | sum of deviations: 20151353477.000004
[2025-07-27 01:18:38] 2025-07-27 05:18:02,809 | INFO     | mean x: 1753589630.0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,809 | INFO     | mean y: 2214235.568
[2025-07-27 01:18:38] 2025-07-27 05:18:02,809 | INFO     | -- intersect: -58349218286.91786
[2025-07-27 01:18:38] 2025-07-27 05:18:02,809 | INFO     | intersect: -58349218286.91786
[2025-07-27 01:18:38] 2025-07-27 05:18:02,822 | INFO     | chi2: 1.4609037191161685
[2025-07-27 01:18:38] 2025-07-27 05:18:02,823 | INFO     | sum of square deviations: 535786790.0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,824 | INFO     | sum of deviations: 19599548879.999992
[2025-07-27 01:18:38] 2025-07-27 05:18:02,824 | INFO     | mean x: 1753589477.5
[2025-07-27 01:18:38] 2025-07-27 05:18:02,824 | INFO     | mean y: 2213007.15
[2025-07-27 01:18:38] 2025-07-27 05:18:02,824 | INFO     | -- intersect: -64145622141.445015
[2025-07-27 01:18:38] 2025-07-27 05:18:02,824 | INFO     | intersect: -64145622141.445015
[2025-07-27 01:18:38] 2025-07-27 05:18:02,825 | INFO     | chi2: 1.458940057714082
[2025-07-27 01:18:38] 2025-07-27 05:18:02,825 | INFO     | current chi2=1.458940057714082 (change=0.13441415586746294 %)
[2025-07-27 01:18:38] 2025-07-27 05:18:02,848 | INFO     | right removable region: 119
[2025-07-27 01:18:38] 2025-07-27 05:18:02,848 | INFO     | sum of square deviations: 535786790.0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,849 | INFO     | sum of deviations: 3584219700.0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,849 | INFO     | mean x: 1753589782.5
[2025-07-27 01:18:38] 2025-07-27 05:18:02,849 | INFO     | mean y: 2249721.3333333335
[2025-07-27 01:18:38] 2025-07-27 05:18:02,849 | INFO     | -- intersect: -11728631221.35511
[2025-07-27 01:18:38] 2025-07-27 05:18:02,849 | INFO     | intersect: -11728631221.35511
[2025-07-27 01:18:38] 2025-07-27 05:18:02,850 | INFO     | chi2: 0.024355601993673325
[2025-07-27 01:18:38] 2025-07-27 05:18:02,850 | INFO     | current chi2=0.024355601993673325 (change=98.332840030799 %)
[2025-07-27 01:18:38] 2025-07-27 05:18:02,851 | INFO     | sum of square deviations: 471562330.0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,851 | INFO     | sum of deviations: 2105898912.9999995
[2025-07-27 01:18:38] 2025-07-27 05:18:02,851 | INFO     | mean x: 1753589935.0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,851 | INFO     | mean y: 2253194.5739130434
[2025-07-27 01:18:38] 2025-07-27 05:18:02,851 | INFO     | -- intersect: -7828913340.641569
[2025-07-27 01:18:38] 2025-07-27 05:18:02,852 | INFO     | intersect: -7828913340.641569
[2025-07-27 01:18:38] 2025-07-27 05:18:02,852 | INFO     | chi2: 0.018389306297394808
[2025-07-27 01:18:38] 2025-07-27 05:18:02,852 | INFO     | current chi2=0.018389306297394808 (change=24.496605330586114 %)
[2025-07-27 01:18:38] 2025-07-27 05:18:02,852 | INFO     | left removable region: 20
[2025-07-27 01:18:38] 2025-07-27 05:18:02,852 | INFO     | sum of square deviations: 300842850.0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,853 | INFO     | sum of deviations: 1237923569.0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,853 | INFO     | mean x: 1753590057.0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,853 | INFO     | mean y: 2257297.1717171716
[2025-07-27 01:18:38] 2025-07-27 05:18:02,853 | INFO     | -- intersect: -7213504892.038873
[2025-07-27 01:18:38] 2025-07-27 05:18:02,853 | INFO     | intersect: -7213504892.038873
[2025-07-27 01:18:38] 2025-07-27 05:18:02,853 | INFO     | chi2: 0.01364981263080123
[2025-07-27 01:18:38] 2025-07-27 05:18:02,853 | INFO     | -- intersect: -7213504892.038873
[2025-07-27 01:18:38] 2025-07-27 05:18:02,853 | INFO     | current memory leak: 4.11 B/s (using 99 data points, chi2=0.01)
[2025-07-27 01:18:38] 2025-07-27 05:18:02,854 | INFO     | could have reported an average CPU frequency of 3110 MHz (8 samples)
[2025-07-27 01:18:38] 2025-07-27 05:18:02,854 | INFO     | ..............................
[2025-07-27 01:18:38] 2025-07-27 05:18:02,855 | INFO     | . Timing measurements:
[2025-07-27 01:18:38] 2025-07-27 05:18:02,855 | INFO     | . get job = 0 s
[2025-07-27 01:18:38] 2025-07-27 05:18:02,855 | INFO     | . initial setup = 1 s
[2025-07-27 01:18:38] 2025-07-27 05:18:02,855 | INFO     | . payload setup = 10 s
[2025-07-27 01:18:38] 2025-07-27 05:18:02,855 | INFO     | . stage-in = 0 s
[2025-07-27 01:18:38] 2025-07-27 05:18:02,855 | INFO     | . payload execution = 7620 s
[2025-07-27 01:18:38] 2025-07-27 05:18:02,855 | INFO     | . stage-out = 3 s
[2025-07-27 01:18:38] 2025-07-27 05:18:02,855 | INFO     | . log creation = 0 s
[2025-07-27 01:18:38] 2025-07-27 05:18:02,855 | INFO     | ..............................
[2025-07-27 01:18:38] 2025-07-27 05:18:02,950 | INFO     | 
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | job summary report
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | --------------------------------------------------
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | PanDA job id: 6745735720
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | task id: 45743349
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | errors: (none)
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | pilot state: finished 
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | transexitcode: 0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | exeerrorcode: 0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | exeerrordiag: 
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | exitcode: 0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | exitmsg: OK
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | cpuconsumptiontime: 37902 s
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | nevents: 400
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | neventsw: 0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | pid: 719468
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | pgrp: 719468
[2025-07-27 01:18:38] 2025-07-27 05:18:02,951 | INFO     | corecount: 8
[2025-07-27 01:18:38] 2025-07-27 05:18:02,952 | INFO     | event service: False
[2025-07-27 01:18:38] 2025-07-27 05:18:02,952 | INFO     | sizes: {0: 2397473, 6: 2397735, 11: 2397763, 7635: 2425309, 7640: 2434307, 7643: 2434363, 7653: 2434685}
[2025-07-27 01:18:38] 2025-07-27 05:18:02,952 | INFO     | --------------------------------------------------
[2025-07-27 01:18:38] 2025-07-27 05:18:02,952 | INFO     | 
[2025-07-27 01:18:38] 2025-07-27 05:18:02,952 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 01:18:38] 2025-07-27 05:18:02,992 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,992 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,992 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 01:18:38] 2025-07-27 05:18:02,993 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,994 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 01:18:38] 2025-07-27 05:18:02,994 | INFO     | job 6745735720 has completed (purged errors)
[2025-07-27 01:18:38] 2025-07-27 05:18:02,994 | INFO     | overall cleanup function is called
[2025-07-27 01:18:38] 2025-07-27 05:18:04,005 | INFO     | --- collectZombieJob: --- 10, [719468]
[2025-07-27 01:18:38] 2025-07-27 05:18:04,005 | INFO     | zombie collector waiting for pid 719468
[2025-07-27 01:18:38] 2025-07-27 05:18:04,005 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 01:18:38] 2025-07-27 05:18:04,006 | INFO     | collected zombie processes
[2025-07-27 01:18:38] 2025-07-27 05:18:04,006 | INFO     | will attempt to kill all subprocesses of pid=719468
[2025-07-27 01:18:38] 2025-07-27 05:18:05,403 | INFO     | process IDs to be killed: [719468] (in reverse order)
[2025-07-27 01:18:38] 2025-07-27 05:18:05,605 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 01:18:38] 2025-07-27 05:18:05,606 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 01:18:38] 2025-07-27 05:18:05,650 | INFO     | did not find any defunct processes belonging to 719468
[2025-07-27 01:18:38] 2025-07-27 05:18:05,728 | INFO     | did not find any defunct processes belonging to 719468
[2025-07-27 01:18:38] 2025-07-27 05:18:05,729 | INFO     | ready for new job
[2025-07-27 01:18:38] 2025-07-27 05:18:05,729 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 01:18:38] 2025-07-27 05:18:05,732 | INFO     | ***************************************
[2025-07-27 01:18:38] 2025-07-27 05:18:05,732 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 01:18:38] 2025-07-27 05:18:05,732 | INFO     | ***************************************
[2025-07-27 01:18:38] 2025-07-27 05:18:05,732 | INFO     | 
[2025-07-27 01:18:38] 2025-07-27 05:18:05,743 | INFO     | architecture information:
[2025-07-27 01:18:38] 2025-07-27 05:18:05,745 | INFO     | executing command: cat /etc/os-release
[2025-07-27 01:18:38] 2025-07-27 05:18:05,781 | INFO     | cat /etc/os-release:
[2025-07-27 01:18:38] NAME="CentOS Linux"
[2025-07-27 01:18:38] VERSION="7 (Core)"
[2025-07-27 01:18:38] ID="centos"
[2025-07-27 01:18:38] ID_LIKE="rhel fedora"
[2025-07-27 01:18:38] VERSION_ID="7"
[2025-07-27 01:18:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 01:18:38] ANSI_COLOR="0;31"
[2025-07-27 01:18:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 01:18:38] HOME_URL="https://www.centos.org/"
[2025-07-27 01:18:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 01:18:38] 
[2025-07-27 01:18:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 01:18:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 01:18:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 01:18:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 01:18:38] 
[2025-07-27 01:18:38] 2025-07-27 05:18:05,782 | INFO     | ***************************************
[2025-07-27 01:18:38] 2025-07-27 05:18:06,288 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 01:18:38] 2025-07-27 05:18:06,329 | INFO     | sufficient remaining disk space (75581358080 B)
[2025-07-27 01:18:38] 2025-07-27 05:18:06,330 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 01:18:38] 2025-07-27 05:18:06,330 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 01:18:38] 2025-07-27 05:18:06,330 | INFO     | update_server=False
[2025-07-27 01:18:38] 2025-07-27 05:18:06,330 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 01:18:38] 2025-07-27 05:18:06,330 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 01:18:38] 2025-07-27 05:18:07,027 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 01:18:38] 2025-07-27 05:18:07,027 | INFO     | aborting loop
[2025-07-27 01:18:38] 2025-07-27 05:18:07,271 | INFO     | all payload control threads have been joined
[2025-07-27 01:18:38] 2025-07-27 05:18:07,284 | INFO     | all data control threads have been joined
[2025-07-27 01:18:38] 2025-07-27 05:18:07,339 | INFO     | [job] retrieve thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:07,516 | INFO     | [payload] validate_post thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:07,602 | INFO     | [data] copytool_in thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:07,670 | INFO     | all job control threads have been joined
[2025-07-27 01:18:38] 2025-07-27 05:18:07,965 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 01:18:38] 2025-07-27 05:18:07,981 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:08,033 | INFO     | [job] job monitor thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:08,146 | INFO     | [job] validate thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:08,277 | INFO     | [payload] control thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:08,291 | INFO     | [data] control thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:08,338 | INFO     | [data] copytool_out thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:08,375 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:08,431 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 01:18:38] 2025-07-27 05:18:08,618 | INFO     | [payload] failed_post thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:08,677 | INFO     | [job] control thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:08,836 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:08,980 | INFO     | [job] queue monitor thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:12,451 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:16,836 | INFO     | job.realtimelogging is not enabled
[2025-07-27 01:18:38] 2025-07-27 05:18:17,842 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 01:18:38] 2025-07-27 05:18:19,197 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140119479748416)>', '<ExcThread(monitor, started 140118971098880)>']
[2025-07-27 01:18:38] 2025-07-27 05:18:24,223 | INFO     | all workflow threads have been joined
[2025-07-27 01:18:38] 2025-07-27 05:18:24,223 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 01:18:38] 2025-07-27 05:18:24,224 | INFO     | traces error code: 0
[2025-07-27 01:18:38] 2025-07-27 05:18:24,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 01:18:38] 2025-07-27 05:18:37,267 | INFO     | PID=689178 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 01:18:38] 2025-07-27 05:18:37,268 | INFO     | .. there are 19 such processes running
[2025-07-27 01:18:38] 2025-07-27 05:18:37,270 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 01:18:38] 2025-07-27 05:18:37,270 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 01:18:38] 2025-07-27 05:18:37,270 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 01:18:38] 2025-07-27 05:18:37,270 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 01:18:38] 2025-07-27 05:18:37,270 | INFO     | [monitor] control thread has ended
[2025-07-27 01:18:38] 2025-07-27 05:18:37,595 [wrapper] ==== pilot stdout END ====
[2025-07-27 01:18:38] 2025-07-27 05:18:37,600 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 01:18:38] 2025-07-27 05:18:37,607 [wrapper] pilotpid: 689178
[2025-07-27 01:18:38] 2025-07-27 05:18:37,616 [wrapper] Pilot exit status: 0
[2025-07-27 01:18:38] 2025-07-27 05:18:37,649 [wrapper] pandaids: 6745735720 6745735720
[2025-07-27 01:18:38] 2025-07-27 05:18:38,044 [wrapper] cleanup supervisor_pilot 2495189 689179
[2025-07-27 01:18:38] 2025-07-27 05:18:38,061 [wrapper] Test setup, not cleaning
[2025-07-27 01:18:38] 2025-07-27 05:18:38,075 [wrapper] apfmon messages muted
[2025-07-27 01:18:38] 2025-07-27 05:18:38,078 [wrapper] ==== wrapper stdout END ====
[2025-07-27 01:18:38] 2025-07-27 05:18:38,106 [wrapper] ==== wrapper stderr END ====
[2025-07-27 01:18:38]  *** Error codes and diagnostics ***
[2025-07-27 01:18:38]     "exeErrorCode": 0,
[2025-07-27 01:18:38]     "exeErrorDiag": "",
[2025-07-27 01:18:38]     "pilotErrorCode": 0,
[2025-07-27 01:18:38]     "pilotErrorDiag": "",
[2025-07-27 01:18:38]  *** Listing of results directory ***
[2025-07-27 01:18:38] total 653856
[2025-07-27 01:18:38] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-27 01:18:38] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 16:42 pilot3.tar.gz
[2025-07-27 01:18:38] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 17:09 queuedata.json
[2025-07-27 01:18:38] -rwx------. 1 boincer umatlas     36292 Jul 26 17:10 runpilot2-wrapper.sh
[2025-07-27 01:18:38] -rw-r--r--. 1 boincer umatlas       100 Jul 26 22:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 01:18:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 22:06 run_atlas
[2025-07-27 01:18:38] -rw-r--r--. 1 boincer umatlas       105 Jul 26 22:06 job.xml
[2025-07-27 01:18:38] -rw-r--r--. 3 boincer umatlas 230552329 Jul 26 22:07 EVNT.45743347._002547.pool.root.1
[2025-07-27 01:18:38] -rw-r--r--. 3 boincer umatlas 230552329 Jul 26 22:07 ATLAS.root_0
[2025-07-27 01:18:38] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 22:07 shared
[2025-07-27 01:18:38] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 22:07 input.tar.gz
[2025-07-27 01:18:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 22:07 start_atlas.sh
[2025-07-27 01:18:38] -rw-r--r--. 1 boincer umatlas         0 Jul 26 22:07 boinc_lockfile
[2025-07-27 01:18:38] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 23:09 pandaJob.out
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas    980117 Jul 26 23:10 agis_schedconf.cvmfs.json
[2025-07-27 01:18:38] -rw-r--r--. 1 boincer umatlas      6932 Jul 27 01:10 init_data.xml
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas 202480267 Jul 27 01:17 HITS.45743349._044434.pool.root.1
[2025-07-27 01:18:38] -rw-r--r--. 1 boincer umatlas       530 Jul 27 01:17 boinc_task_state.xml
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas      1046 Jul 27 01:17 memory_monitor_summary.json
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas   1593052 Jul 27 01:17 agis_ddmendpoints.agis.ALL.json
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas    323938 Jul 27 01:17 log.45743349._044434.job.log.tgz.1
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas      7793 Jul 27 01:18 heartbeat.json
[2025-07-27 01:18:38] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 01:18 boinc_mmap_file
[2025-07-27 01:18:38] -rw-r--r--. 1 boincer umatlas        28 Jul 27 01:18 wrapper_checkpoint.txt
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas        96 Jul 27 01:18 pilot_heartbeat.json
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas       822 Jul 27 01:18 pilotlog.txt
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas    714555 Jul 27 01:18 log.45743349._044434.job.log.1
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas       357 Jul 27 01:18 output.list
[2025-07-27 01:18:38] -rw-r--r--. 1 boincer umatlas       620 Jul 27 01:18 runtime_log
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas   1054720 Jul 27 01:18 result.tar.gz
[2025-07-27 01:18:38] -rw-r--r--. 1 boincer umatlas      8740 Jul 27 01:18 runtime_log.err
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas       781 Jul 27 01:18 QzMKDmRL1z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmB9SLDmXySpdn.diag
[2025-07-27 01:18:38] -rw-r--r--. 1 boincer umatlas     23287 Jul 27 01:18 stderr.txt
[2025-07-27 01:18:38] HITS file was successfully produced:
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas 202480267 Jul 27 01:17 shared/HITS.pool.root.1
[2025-07-27 01:18:38]  *** Contents of shared directory: ***
[2025-07-27 01:18:38] total 424476
[2025-07-27 01:18:38] -rw-r--r--. 3 boincer umatlas 230552329 Jul 26 22:07 ATLAS.root_0
[2025-07-27 01:18:38] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 22:07 input.tar.gz
[2025-07-27 01:18:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 22:07 start_atlas.sh
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas 202480267 Jul 27 01:17 HITS.pool.root.1
[2025-07-27 01:18:38] -rw-------. 1 boincer umatlas   1054720 Jul 27 01:18 result.tar.gz
01:18:39 (677375): run_atlas exited; CPU time 38149.422572
01:18:39 (677375): called boinc_finish(0)

</stderr_txt>
]]>

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