Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:09:57 (127381): wrapper (7.7.26015): starting
22:09:57 (127381): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 22:09:57] Arguments: --nthreads 8
[2025-07-26 22:09:57] Threads: 8
[2025-07-26 22:09:57] Checking for CVMFS
[2025-07-26 22:09:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 22:09:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 22:09:57] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 22:09:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 22:09:57] 2.13.1.0 2445429 3715 95272 148795 1 188 34725860 40960001 12863 16776704 0 59487727 99.999 130717 60405 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 22:09:57] CVMFS is ok
[2025-07-26 22:09:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 22:09:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 22:09:57] Further information can be found at the LHC@home message board.
[2025-07-26 22:09:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 22:09:57] Checking for apptainer binary...
[2025-07-26 22:09:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 22:09:57] Running /usr/bin/apptainer --version
[2025-07-26 22:09:57] apptainer version 1.4.1-1.el9
[2025-07-26 22:09:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 22:09:57] c-208-40.aglt2.org
[2025-07-26 22:09:57] apptainer works
[2025-07-26 22:09:57] Set ATHENA_PROC_NUMBER=8
[2025-07-26 22:09:57] Set ATHENA_CORE_NUMBER=8
[2025-07-26 22:09:57] Starting ATLAS job with PandaID=6745735625
[2025-07-26 22:09:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 23:07:36]  *** The last 200 lines of the pilot log: ***
[2025-07-26 23:07:36]  replicas=None
[2025-07-26 23:07:36]  scope=mc23_13p6TeV
[2025-07-26 23:07:36]  status=None
[2025-07-26 23:07:36]  status_code=0
[2025-07-26 23:07:36]  storage_token=
[2025-07-26 23:07:36]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6745735625/log.45743349._044339.job.log.tgz.1
[2025-07-26 23:07:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/4b/log.45743349._044339.job.log.tgz.1
[2025-07-26 23:07:36]  workdir=None
[2025-07-26 23:07:36] ]
[2025-07-26 23:07:36] 2025-07-27 03:06:55,541 | INFO     | transferring file log.45743349._044339.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6745735625/log.45743349._044339.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 23:07:36] 2025-07-27 03:06:55,541 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6745735625/log.45743349._044339.job.log.tgz.1 /tmp/boinchome/slots/3/log.45743349._044339.job
[2025-07-26 23:07:36] 2025-07-27 03:06:55,560 | INFO     | adding to output.list: log.45743349._044339.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/4b/log.45743349._044339.job.log.tg
[2025-07-26 23:07:36] 2025-07-27 03:06:55,561 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 23:07:36] 2025-07-27 03:06:55,561 | INFO     | summary of transferred files:
[2025-07-26 23:07:36] 2025-07-27 03:06:55,561 | INFO     |  -- lfn=log.45743349._044339.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 23:07:36] 2025-07-27 03:06:55,561 | INFO     | stage-out finished correctly
[2025-07-26 23:07:36] 2025-07-27 03:06:55,651 | INFO     | PID=132667 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 23:07:36] 2025-07-27 03:06:55,651 | INFO     | .. there are 16 such processes running
[2025-07-26 23:07:36] 2025-07-27 03:06:56,187 | WARNING  | process 140671 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 23:07:36] 2025-07-27 03:06:56,187 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6745735625/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:07:36] 2025-07-27 03:06:56,539 | INFO     | number of running child processes to parent process 140671: 1
[2025-07-26 23:07:36] 2025-07-27 03:06:56,539 | INFO     | maximum number of monitored processes: 6
[2025-07-26 23:07:36] 2025-07-27 03:06:58,511 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 23:07:36] 2025-07-27 03:06:58,565 | INFO     | job 6745735625 has state=finished
[2025-07-26 23:07:36] 2025-07-27 03:06:58,566 | INFO     | preparing for final server update for job 6745735625 in state='finished'
[2025-07-26 23:07:36] 2025-07-27 03:06:58,621 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-26 23:07:36] 2025-07-27 03:06:58,621 | INFO     | this job has now completed (state=finished)
[2025-07-26 23:07:36] 2025-07-27 03:06:58,621 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 23:07:36] 2025-07-27 03:06:58,621 | INFO     | log transfer has been attempted: DONE
[2025-07-26 23:07:36] 2025-07-27 03:06:58,621 | INFO     | job 6745735625 has finished - writing final server update
[2025-07-26 23:07:36] 2025-07-27 03:06:58,621 | INFO     | total number of processed events: 400 (read)
[2025-07-26 23:07:36] 2025-07-27 03:06:58,622 | INFO     | executing command: lscpu
[2025-07-26 23:07:36] 2025-07-27 03:06:58,678 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 23:07:36] 2025-07-27 03:06:59,047 | INFO     | monitor loop #249: job 0:6745735625 is in state 'finished'
[2025-07-26 23:07:36] 2025-07-27 03:06:59,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 23:07:36] 2025-07-27 03:07:01,550 | INFO     | monitor loop #250: job 0:6745735625 is in state 'finished'
[2025-07-26 23:07:36] 2025-07-27 03:07:01,550 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 23:07:36] 2025-07-27 03:07:02,178 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 23:07:36] 2025-07-27 03:07:02,183 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3730.9118828125047
[2025-07-26 23:07:36] 2025-07-27 03:07:02,197 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6745735625/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:07:36] 2025-07-27 03:07:02,197 | INFO     | extracted standard info from prmon json
[2025-07-26 23:07:36] 2025-07-27 03:07:02,197 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 23:07:36] 2025-07-27 03:07:02,197 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 23:07:36] 2025-07-27 03:07:02,197 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 23:07:36] 2025-07-27 03:07:02,198 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 23:07:36] 2025-07-27 03:07:02,199 | INFO     | fitting pss+swap vs Time
[2025-07-26 23:07:36] 2025-07-27 03:07:02,199 | INFO     | sum of square deviations: 36465800.0
[2025-07-26 23:07:36] 2025-07-27 03:07:02,199 | INFO     | sum of deviations: 448355307.0
[2025-07-26 23:07:36] 2025-07-27 03:07:02,199 | INFO     | mean x: 1753583999.0
[2025-07-26 23:07:36] 2025-07-27 03:07:02,199 | INFO     | mean y: 2520462.326530612
[2025-07-26 23:07:36] 2025-07-27 03:07:02,199 | INFO     | -- intersect: -21558193747.20494
[2025-07-26 23:07:36] 2025-07-27 03:07:02,199 | INFO     | intersect: -21558193747.20494
[2025-07-26 23:07:36] 2025-07-27 03:07:02,199 | INFO     | chi2: 0.0007865734119560134
[2025-07-26 23:07:36] 2025-07-27 03:07:02,199 | INFO     | -- intersect: -21558193747.20494
[2025-07-26 23:07:36] 2025-07-27 03:07:02,199 | INFO     | current memory leak: 12.30 B/s (using 49 data points, chi2=0.00)
[2025-07-26 23:07:36] 2025-07-27 03:07:02,199 | INFO     | could have reported an average CPU frequency of 3753 MHz (5 samples)
[2025-07-26 23:07:36] 2025-07-27 03:07:02,200 | INFO     | ..............................
[2025-07-26 23:07:36] 2025-07-27 03:07:02,200 | INFO     | . Timing measurements:
[2025-07-26 23:07:36] 2025-07-27 03:07:02,200 | INFO     | . get job = 0 s
[2025-07-26 23:07:36] 2025-07-27 03:07:02,200 | INFO     | . initial setup = 2 s
[2025-07-26 23:07:36] 2025-07-27 03:07:02,200 | INFO     | . payload setup = 5 s
[2025-07-26 23:07:36] 2025-07-27 03:07:02,200 | INFO     | . stage-in = 0 s
[2025-07-26 23:07:36] 2025-07-27 03:07:02,200 | INFO     | . payload execution = 3384 s
[2025-07-26 23:07:36] 2025-07-27 03:07:02,200 | INFO     | . stage-out = 0 s
[2025-07-26 23:07:36] 2025-07-27 03:07:02,200 | INFO     | . log creation = 0 s
[2025-07-26 23:07:36] 2025-07-27 03:07:02,200 | INFO     | ..............................
[2025-07-26 23:07:36] 2025-07-27 03:07:02,258 | INFO     | 
[2025-07-26 23:07:36] 2025-07-27 03:07:02,258 | INFO     | job summary report
[2025-07-26 23:07:36] 2025-07-27 03:07:02,258 | INFO     | --------------------------------------------------
[2025-07-26 23:07:36] 2025-07-27 03:07:02,258 | INFO     | PanDA job id: 6745735625
[2025-07-26 23:07:36] 2025-07-27 03:07:02,258 | INFO     | task id: 45743349
[2025-07-26 23:07:36] 2025-07-27 03:07:02,258 | INFO     | errors: (none)
[2025-07-26 23:07:36] 2025-07-27 03:07:02,258 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | pilot state: finished 
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | transexitcode: 0
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | exeerrorcode: 0
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | exeerrordiag: 
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | exitcode: 0
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | exitmsg: OK
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | cpuconsumptiontime: 25292 s
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | nevents: 400
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | neventsw: 0
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | pid: 140671
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | pgrp: 140671
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | corecount: 8
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | event service: False
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | sizes: {0: 2397475, 3: 2397737, 11: 2397765, 3393: 2423473, 3394: 2423472, 3395: 2432526, 3398: 2432710, 3401: 2432936}
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | --------------------------------------------------
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | 
[2025-07-26 23:07:36] 2025-07-27 03:07:02,259 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-07-26 23:07:36] 2025-07-27 03:07:02,279 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,279 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,280 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 23:07:36] 2025-07-27 03:07:02,281 | INFO     | job 6745735625 has completed (purged errors)
[2025-07-26 23:07:36] 2025-07-27 03:07:02,281 | INFO     | overall cleanup function is called
[2025-07-26 23:07:36] 2025-07-27 03:07:03,287 | INFO     | --- collectZombieJob: --- 10, [140671]
[2025-07-26 23:07:36] 2025-07-27 03:07:03,287 | INFO     | zombie collector waiting for pid 140671
[2025-07-26 23:07:36] 2025-07-27 03:07:03,288 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 23:07:36] 2025-07-27 03:07:03,288 | INFO     | collected zombie processes
[2025-07-26 23:07:36] 2025-07-27 03:07:03,288 | INFO     | will attempt to kill all subprocesses of pid=140671
[2025-07-26 23:07:36] 2025-07-27 03:07:03,639 | INFO     | process IDs to be killed: [140671] (in reverse order)
[2025-07-26 23:07:36] 2025-07-27 03:07:03,753 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 23:07:36] 2025-07-27 03:07:03,753 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 23:07:36] 2025-07-27 03:07:03,770 | INFO     | did not find any defunct processes belonging to 140671
[2025-07-26 23:07:36] 2025-07-27 03:07:03,782 | INFO     | did not find any defunct processes belonging to 140671
[2025-07-26 23:07:36] 2025-07-27 03:07:03,782 | INFO     | ready for new job
[2025-07-26 23:07:36] 2025-07-27 03:07:03,782 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 23:07:36] 2025-07-27 03:07:03,784 | INFO     | ***************************************
[2025-07-26 23:07:36] 2025-07-27 03:07:03,784 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 23:07:36] 2025-07-27 03:07:03,784 | INFO     | ***************************************
[2025-07-26 23:07:36] 2025-07-27 03:07:03,784 | INFO     | 
[2025-07-26 23:07:36] 2025-07-27 03:07:03,788 | INFO     | architecture information:
[2025-07-26 23:07:36] 2025-07-27 03:07:03,789 | INFO     | executing command: cat /etc/os-release
[2025-07-26 23:07:36] 2025-07-27 03:07:03,804 | INFO     | cat /etc/os-release:
[2025-07-26 23:07:36] NAME="CentOS Linux"
[2025-07-26 23:07:36] VERSION="7 (Core)"
[2025-07-26 23:07:36] ID="centos"
[2025-07-26 23:07:36] ID_LIKE="rhel fedora"
[2025-07-26 23:07:36] VERSION_ID="7"
[2025-07-26 23:07:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 23:07:36] ANSI_COLOR="0;31"
[2025-07-26 23:07:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 23:07:36] HOME_URL="https://www.centos.org/"
[2025-07-26 23:07:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 23:07:36] 
[2025-07-26 23:07:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 23:07:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 23:07:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 23:07:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 23:07:36] 
[2025-07-26 23:07:36] 2025-07-27 03:07:03,805 | INFO     | ***************************************
[2025-07-26 23:07:36] 2025-07-27 03:07:04,307 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-07-26 23:07:36] 2025-07-27 03:07:04,324 | INFO     | sufficient remaining disk space (164367433728 B)
[2025-07-26 23:07:36] 2025-07-27 03:07:04,324 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 23:07:36] 2025-07-27 03:07:04,324 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 23:07:36] 2025-07-27 03:07:04,324 | INFO     | update_server=False
[2025-07-26 23:07:36] 2025-07-27 03:07:04,324 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 23:07:36] 2025-07-27 03:07:04,324 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 23:07:36] 2025-07-27 03:07:04,571 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 23:07:36] 2025-07-27 03:07:04,573 | INFO     | all payload control threads have been joined
[2025-07-26 23:07:36] 2025-07-27 03:07:04,814 | INFO     | all job control threads have been joined
[2025-07-26 23:07:36] 2025-07-27 03:07:05,001 | INFO     | all data control threads have been joined
[2025-07-26 23:07:36] 2025-07-27 03:07:05,059 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:07:36] 2025-07-27 03:07:05,059 | INFO     | aborting loop
[2025-07-26 23:07:36] 2025-07-27 03:07:05,329 | INFO     | [job] retrieve thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:05,575 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:05,578 | INFO     | [payload] control thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:05,618 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:05,704 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:05,819 | INFO     | [job] control thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:06,006 | INFO     | [data] control thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:06,060 | INFO     | [job] job monitor thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:06,268 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:06,308 | INFO     | [payload] failed_post thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:06,329 | INFO     | [data] copytool_out thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:06,373 | INFO     | [data] copytool_in thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:06,750 | INFO     | [job] validate thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:06,848 | INFO     | [payload] validate_post thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:07,266 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:07:36] 2025-07-27 03:07:08,271 | INFO     | [job] queue monitor thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:08,577 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 23:07:36] 2025-07-27 03:07:09,124 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139630039201600)>', '<ExcThread(monitor, started 139629546153728)>']
[2025-07-26 23:07:36] 2025-07-27 03:07:14,150 | INFO     | all workflow threads have been joined
[2025-07-26 23:07:36] 2025-07-27 03:07:14,150 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 23:07:36] 2025-07-27 03:07:14,151 | INFO     | traces error code: 0
[2025-07-26 23:07:36] 2025-07-27 03:07:14,151 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 23:07:36] 2025-07-27 03:07:34,162 | INFO     | PID=132667 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 23:07:36] 2025-07-27 03:07:34,163 | INFO     | .. there are 16 such processes running
[2025-07-26 23:07:36] 2025-07-27 03:07:34,163 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 23:07:36] 2025-07-27 03:07:34,164 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 23:07:36] 2025-07-27 03:07:34,164 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 23:07:36] 2025-07-27 03:07:34,164 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 23:07:36] 2025-07-27 03:07:34,164 | INFO     | [monitor] control thread has ended
[2025-07-26 23:07:36] 2025-07-27 03:07:34,254 [wrapper] ==== pilot stdout END ====
[2025-07-26 23:07:36] 2025-07-27 03:07:34,257 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 23:07:36] 2025-07-27 03:07:34,259 [wrapper] pilotpid: 132667
[2025-07-26 23:07:36] 2025-07-27 03:07:34,262 [wrapper] Pilot exit status: 0
[2025-07-26 23:07:36] 2025-07-27 03:07:34,272 [wrapper] pandaids: 6745735625
[2025-07-26 23:07:36] 2025-07-27 03:07:34,351 [wrapper] cleanup supervisor_pilot  383038 132668
[2025-07-26 23:07:36] 2025-07-27 03:07:34,355 [wrapper] Test setup, not cleaning
[2025-07-26 23:07:36] 2025-07-27 03:07:34,357 [wrapper] apfmon messages muted
[2025-07-26 23:07:36] 2025-07-27 03:07:34,359 [wrapper] ==== wrapper stdout END ====
[2025-07-26 23:07:36] 2025-07-27 03:07:34,361 [wrapper] ==== wrapper stderr END ====
[2025-07-26 23:07:36]  *** Error codes and diagnostics ***
[2025-07-26 23:07:36]     "exeErrorCode": 0,
[2025-07-26 23:07:36]     "exeErrorDiag": "",
[2025-07-26 23:07:36]     "pilotErrorCode": 0,
[2025-07-26 23:07:36]     "pilotErrorDiag": "",
[2025-07-26 23:07:36]  *** Listing of results directory ***
[2025-07-26 23:07:36] total 438540
[2025-07-26 23:07:36] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 16:42 pilot3.tar.gz
[2025-07-26 23:07:36] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 17:01 queuedata.json
[2025-07-26 23:07:36] -rwx------. 1 boincer umatlas     36292 Jul 26 17:01 runpilot2-wrapper.sh
[2025-07-26 23:07:36] -rw-r--r--. 1 boincer umatlas       100 Jul 26 22:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 23:07:36] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 22:09 run_atlas
[2025-07-26 23:07:36] -rw-r--r--. 1 boincer umatlas       105 Jul 26 22:09 job.xml
[2025-07-26 23:07:36] -rw-r--r--. 2 boincer umatlas 230508629 Jul 26 22:09 EVNT.45743347._002543.pool.root.1
[2025-07-26 23:07:36] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 22:09 start_atlas.sh
[2025-07-26 23:07:36] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 22:09 shared
[2025-07-26 23:07:36] -rw-r--r--. 2 boincer umatlas    542894 Jul 26 22:09 input.tar.gz
[2025-07-26 23:07:36] -rw-r--r--. 1 boincer umatlas         0 Jul 26 22:09 boinc_lockfile
[2025-07-26 23:07:36] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 22:09 pandaJob.out
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas    980125 Jul 26 22:10 agis_schedconf.cvmfs.json
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas   1593052 Jul 26 22:10 agis_ddmendpoints.agis.ALL.json
[2025-07-26 23:07:36] drwx------. 4 boincer umatlas      4096 Jul 26 22:10 pilot3
[2025-07-26 23:07:36] -rw-r--r--. 1 boincer umatlas      7172 Jul 26 23:04 init_data.xml
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas 213413301 Jul 26 23:06 HITS.45743349._044339.pool.root.1
[2025-07-26 23:07:36] -rw-r--r--. 1 boincer umatlas       529 Jul 26 23:06 boinc_task_state.xml
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas      1028 Jul 26 23:06 memory_monitor_summary.json
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas    284424 Jul 26 23:06 log.45743349._044339.job.log.tgz.1
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas      7768 Jul 26 23:07 heartbeat.json
[2025-07-26 23:07:36] -rw-r--r--. 1 boincer umatlas        27 Jul 26 23:07 wrapper_checkpoint.txt
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas       822 Jul 26 23:07 pilotlog.txt
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas        95 Jul 26 23:07 pilot_heartbeat.json
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas    347545 Jul 26 23:07 log.45743349._044339.job.log.1
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas       357 Jul 26 23:07 output.list
[2025-07-26 23:07:36] -rw-r--r--. 1 boincer umatlas       620 Jul 26 23:07 runtime_log
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas    655360 Jul 26 23:07 result.tar.gz
[2025-07-26 23:07:36] -rw-r--r--. 1 boincer umatlas      8660 Jul 26 23:07 runtime_log.err
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas       651 Jul 26 23:07 dWSKDmLC1z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmc7SLDm1pvD7m.diag
[2025-07-26 23:07:36] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 23:07 boinc_mmap_file
[2025-07-26 23:07:36] -rw-r--r--. 1 boincer umatlas     21980 Jul 26 23:07 stderr.txt
[2025-07-26 23:07:36] HITS file was successfully produced:
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas 213413301 Jul 26 23:06 shared/HITS.pool.root.1
[2025-07-26 23:07:36]  *** Contents of shared directory: ***
[2025-07-26 23:07:36] total 434716
[2025-07-26 23:07:36] -rw-r--r--. 2 boincer umatlas 230508629 Jul 26 22:09 ATLAS.root_0
[2025-07-26 23:07:36] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 22:09 start_atlas.sh
[2025-07-26 23:07:36] -rw-r--r--. 2 boincer umatlas    542894 Jul 26 22:09 input.tar.gz
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas 213413301 Jul 26 23:06 HITS.pool.root.1
[2025-07-26 23:07:36] -rw-------. 1 boincer umatlas    655360 Jul 26 23:07 result.tar.gz
23:07:38 (127381): run_atlas exited; CPU time 25368.180299
23:07:38 (127381): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN