Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:05:15 (50136): wrapper (7.7.26015): starting
22:05:15 (50136): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 22:05:15] Arguments: --nthreads 8
[2025-07-26 22:05:15] Threads: 8
[2025-07-26 22:05:15] Checking for CVMFS
[2025-07-26 22:05:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 22:05:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 22:05:15] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 22:05:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 22:05:15] 2.13.1.0 2445429 3710 94248 148795 2 188 34725688 40960001 12916 16776704 0 59267000 99.999 130716 60460 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 22:05:15] CVMFS is ok
[2025-07-26 22:05:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 22:05:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 22:05:15] Further information can be found at the LHC@home message board.
[2025-07-26 22:05:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 22:05:15] Checking for apptainer binary...
[2025-07-26 22:05:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 22:05:15] Running /usr/bin/apptainer --version
[2025-07-26 22:05:15] apptainer version 1.4.1-1.el9
[2025-07-26 22:05:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 22:05:15] c-208-40.aglt2.org
[2025-07-26 22:05:15] apptainer works
[2025-07-26 22:05:15] Set ATHENA_PROC_NUMBER=8
[2025-07-26 22:05:15] Set ATHENA_CORE_NUMBER=8
[2025-07-26 22:05:15] Starting ATLAS job with PandaID=6745594792
[2025-07-26 22:05:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 23:03:38]  *** The last 200 lines of the pilot log: ***
[2025-07-26 23:03:38]  lfn=log.45743349._044200.job.log.tgz.1
[2025-07-26 23:03:38]  mtime=0
[2025-07-26 23:03:38]  protocol_id=None
[2025-07-26 23:03:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 23:03:38]  replicas=None
[2025-07-26 23:03:38]  scope=mc23_13p6TeV
[2025-07-26 23:03:38]  status=None
[2025-07-26 23:03:38]  status_code=0
[2025-07-26 23:03:38]  storage_token=
[2025-07-26 23:03:38]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6745594792/log.45743349._044200.job.log.tgz.1
[2025-07-26 23:03:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/d1/log.45743349._044200.job.log.tgz.1
[2025-07-26 23:03:38]  workdir=None
[2025-07-26 23:03:38] ]
[2025-07-26 23:03:38] 2025-07-27 03:03:01,018 | INFO     | transferring file log.45743349._044200.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6745594792/log.45743349._044200.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 23:03:38] 2025-07-27 03:03:01,018 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6745594792/log.45743349._044200.job.log.tgz.1 /tmp/boinchome/slots/5/log.45743349._044200.job
[2025-07-26 23:03:38] 2025-07-27 03:03:01,036 | INFO     | adding to output.list: log.45743349._044200.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cc/d1/log.45743349._044200.job.log.tg
[2025-07-26 23:03:38] 2025-07-27 03:03:01,037 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 23:03:38] 2025-07-27 03:03:01,037 | INFO     | summary of transferred files:
[2025-07-26 23:03:38] 2025-07-27 03:03:01,037 | INFO     |  -- lfn=log.45743349._044200.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 23:03:38] 2025-07-27 03:03:01,037 | INFO     | stage-out finished correctly
[2025-07-26 23:03:38] 2025-07-27 03:03:01,331 | WARNING  | process 65911 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 23:03:38] 2025-07-27 03:03:01,331 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6745594792/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:03:38] 2025-07-27 03:03:01,641 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 23:03:38] 2025-07-27 03:03:01,694 | INFO     | job 6745594792 has state=finished
[2025-07-26 23:03:38] 2025-07-27 03:03:01,694 | INFO     | preparing for final server update for job 6745594792 in state='finished'
[2025-07-26 23:03:38] 2025-07-27 03:03:01,695 | INFO     | this job has now completed (state=finished)
[2025-07-26 23:03:38] 2025-07-27 03:03:01,695 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 23:03:38] 2025-07-27 03:03:01,695 | INFO     | log transfer has been attempted: DONE
[2025-07-26 23:03:38] 2025-07-27 03:03:01,695 | INFO     | job 6745594792 has finished - writing final server update
[2025-07-26 23:03:38] 2025-07-27 03:03:01,695 | INFO     | total number of processed events: 400 (read)
[2025-07-26 23:03:38] 2025-07-27 03:03:01,696 | INFO     | executing command: lscpu
[2025-07-26 23:03:38] 2025-07-27 03:03:01,746 | INFO     | number of running child processes to parent process 65911: 1
[2025-07-26 23:03:38] 2025-07-27 03:03:01,747 | INFO     | maximum number of monitored processes: 6
[2025-07-26 23:03:38] 2025-07-27 03:03:01,751 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 23:03:38] 2025-07-27 03:03:04,249 | INFO     | monitor loop #254: job 0:6745594792 is in state 'finished'
[2025-07-26 23:03:38] 2025-07-27 03:03:04,249 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 23:03:38] 2025-07-27 03:03:05,362 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 23:03:38] 2025-07-27 03:03:05,367 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3743.6675234375007
[2025-07-26 23:03:38] 2025-07-27 03:03:05,380 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6745594792/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:03:38] 2025-07-27 03:03:05,380 | INFO     | extracted standard info from prmon json
[2025-07-26 23:03:38] 2025-07-27 03:03:05,380 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 23:03:38] 2025-07-27 03:03:05,380 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 23:03:38] 2025-07-27 03:03:05,381 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 23:03:38] 2025-07-27 03:03:05,381 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 23:03:38] 2025-07-27 03:03:05,382 | INFO     | fitting pss+swap vs Time
[2025-07-26 23:03:38] 2025-07-27 03:03:05,382 | INFO     | sum of square deviations: 38744912.5
[2025-07-26 23:03:38] 2025-07-27 03:03:05,382 | INFO     | sum of deviations: 348373378.99999994
[2025-07-26 23:03:38] 2025-07-27 03:03:05,382 | INFO     | mean x: 1753583748.5
[2025-07-26 23:03:38] 2025-07-27 03:03:05,382 | INFO     | mean y: 2507049.96
[2025-07-26 23:03:38] 2025-07-27 03:03:05,382 | INFO     | -- intersect: -15764773256.18164
[2025-07-26 23:03:38] 2025-07-27 03:03:05,382 | INFO     | intersect: -15764773256.18164
[2025-07-26 23:03:38] 2025-07-27 03:03:05,382 | INFO     | chi2: 0.00011808311625220528
[2025-07-26 23:03:38] 2025-07-27 03:03:05,382 | INFO     | -- intersect: -15764773256.18164
[2025-07-26 23:03:38] 2025-07-27 03:03:05,382 | INFO     | current memory leak: 8.99 B/s (using 50 data points, chi2=0.00)
[2025-07-26 23:03:38] 2025-07-27 03:03:05,382 | INFO     | could have reported an average CPU frequency of 3759 MHz (5 samples)
[2025-07-26 23:03:38] 2025-07-27 03:03:05,383 | INFO     | ..............................
[2025-07-26 23:03:38] 2025-07-27 03:03:05,383 | INFO     | . Timing measurements:
[2025-07-26 23:03:38] 2025-07-27 03:03:05,383 | INFO     | . get job = 0 s
[2025-07-26 23:03:38] 2025-07-27 03:03:05,383 | INFO     | . initial setup = 2 s
[2025-07-26 23:03:38] 2025-07-27 03:03:05,383 | INFO     | . payload setup = 5 s
[2025-07-26 23:03:38] 2025-07-27 03:03:05,383 | INFO     | . stage-in = 0 s
[2025-07-26 23:03:38] 2025-07-27 03:03:05,383 | INFO     | . payload execution = 3431 s
[2025-07-26 23:03:38] 2025-07-27 03:03:05,383 | INFO     | . stage-out = 0 s
[2025-07-26 23:03:38] 2025-07-27 03:03:05,383 | INFO     | . log creation = 0 s
[2025-07-26 23:03:38] 2025-07-27 03:03:05,383 | INFO     | ..............................
[2025-07-26 23:03:38] 2025-07-27 03:03:05,442 | INFO     | 
[2025-07-26 23:03:38] 2025-07-27 03:03:05,442 | INFO     | job summary report
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | --------------------------------------------------
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | PanDA job id: 6745594792
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | task id: 45743349
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | errors: (none)
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | pilot state: finished 
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | transexitcode: 0
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | exeerrorcode: 0
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | exeerrordiag: 
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | exitcode: 0
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | exitmsg: OK
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | cpuconsumptiontime: 25533 s
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | nevents: 400
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | neventsw: 0
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | pid: 65911
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | pgrp: 65911
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | corecount: 8
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | event service: False
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | sizes: {0: 2397423, 4: 2397685, 11: 2397713, 3440: 2423418, 3442: 2432416, 3443: 2432472, 3447: 2432826}
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | --------------------------------------------------
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | 
[2025-07-26 23:03:38] 2025-07-27 03:03:05,443 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-07-26 23:03:38] 2025-07-27 03:03:05,459 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,459 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,459 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,459 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,459 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,459 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,459 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,459 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,459 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,460 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,460 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,460 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,460 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,460 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,460 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,460 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,460 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,460 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 23:03:38] 2025-07-27 03:03:05,460 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,460 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 23:03:38] 2025-07-27 03:03:05,460 | INFO     | job 6745594792 has completed (purged errors)
[2025-07-26 23:03:38] 2025-07-27 03:03:05,460 | INFO     | overall cleanup function is called
[2025-07-26 23:03:38] 2025-07-27 03:03:06,468 | INFO     | --- collectZombieJob: --- 10, [65911]
[2025-07-26 23:03:38] 2025-07-27 03:03:06,468 | INFO     | zombie collector waiting for pid 65911
[2025-07-26 23:03:38] 2025-07-27 03:03:06,468 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 23:03:38] 2025-07-27 03:03:06,468 | INFO     | collected zombie processes
[2025-07-26 23:03:38] 2025-07-27 03:03:06,468 | INFO     | will attempt to kill all subprocesses of pid=65911
[2025-07-26 23:03:38] 2025-07-27 03:03:06,815 | INFO     | process IDs to be killed: [65911] (in reverse order)
[2025-07-26 23:03:38] 2025-07-27 03:03:06,933 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 23:03:38] 2025-07-27 03:03:06,933 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 23:03:38] 2025-07-27 03:03:06,950 | INFO     | did not find any defunct processes belonging to 65911
[2025-07-26 23:03:38] 2025-07-27 03:03:06,966 | INFO     | did not find any defunct processes belonging to 65911
[2025-07-26 23:03:38] 2025-07-27 03:03:06,966 | INFO     | ready for new job
[2025-07-26 23:03:38] 2025-07-27 03:03:06,966 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 23:03:38] 2025-07-27 03:03:06,967 | INFO     | ***************************************
[2025-07-26 23:03:38] 2025-07-27 03:03:06,968 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 23:03:38] 2025-07-27 03:03:06,968 | INFO     | ***************************************
[2025-07-26 23:03:38] 2025-07-27 03:03:06,968 | INFO     | 
[2025-07-26 23:03:38] 2025-07-27 03:03:06,972 | INFO     | architecture information:
[2025-07-26 23:03:38] 2025-07-27 03:03:06,972 | INFO     | executing command: cat /etc/os-release
[2025-07-26 23:03:38] 2025-07-27 03:03:06,987 | INFO     | cat /etc/os-release:
[2025-07-26 23:03:38] NAME="CentOS Linux"
[2025-07-26 23:03:38] VERSION="7 (Core)"
[2025-07-26 23:03:38] ID="centos"
[2025-07-26 23:03:38] ID_LIKE="rhel fedora"
[2025-07-26 23:03:38] VERSION_ID="7"
[2025-07-26 23:03:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 23:03:38] ANSI_COLOR="0;31"
[2025-07-26 23:03:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 23:03:38] HOME_URL="https://www.centos.org/"
[2025-07-26 23:03:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 23:03:38] 
[2025-07-26 23:03:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 23:03:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 23:03:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 23:03:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 23:03:38] 
[2025-07-26 23:03:38] 2025-07-27 03:03:06,988 | INFO     | ***************************************
[2025-07-26 23:03:38] 2025-07-27 03:03:07,490 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-07-26 23:03:38] 2025-07-27 03:03:07,506 | INFO     | sufficient remaining disk space (165158060032 B)
[2025-07-26 23:03:38] 2025-07-27 03:03:07,507 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 23:03:38] 2025-07-27 03:03:07,507 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 23:03:38] 2025-07-27 03:03:07,507 | INFO     | update_server=False
[2025-07-26 23:03:38] 2025-07-27 03:03:07,507 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 23:03:38] 2025-07-27 03:03:07,507 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 23:03:38] 2025-07-27 03:03:07,650 | INFO     | all data control threads have been joined
[2025-07-26 23:03:38] 2025-07-27 03:03:07,703 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 23:03:38] 2025-07-27 03:03:07,760 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:03:38] 2025-07-27 03:03:07,760 | INFO     | aborting loop
[2025-07-26 23:03:38] 2025-07-27 03:03:08,034 | INFO     | all payload control threads have been joined
[2025-07-26 23:03:38] 2025-07-27 03:03:08,512 | INFO     | [job] retrieve thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:08,655 | INFO     | [data] control thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:08,746 | INFO     | [job] validate thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:08,766 | INFO     | [job] job monitor thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:08,891 | INFO     | all job control threads have been joined
[2025-07-26 23:03:38] 2025-07-27 03:03:08,909 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:08,991 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:08,994 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:09,039 | INFO     | [payload] control thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:09,513 | INFO     | [data] copytool_out thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:09,545 | INFO     | [data] copytool_in thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:09,579 | INFO     | [payload] failed_post thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:09,896 | INFO     | [job] control thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:10,010 | INFO     | [payload] validate_post thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:10,452 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:03:38] 2025-07-27 03:03:11,458 | INFO     | [job] queue monitor thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:11,709 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:18,351 | INFO     | job.realtimelogging is not enabled
[2025-07-26 23:03:38] 2025-07-27 03:03:19,356 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 23:03:38] 2025-07-27 03:03:19,508 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140465820305216)>', '<ExcThread(monitor, started 140464791467776)>']
[2025-07-26 23:03:38] 2025-07-27 03:03:24,533 | INFO     | all workflow threads have been joined
[2025-07-26 23:03:38] 2025-07-27 03:03:24,533 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 23:03:38] 2025-07-27 03:03:24,533 | INFO     | traces error code: 0
[2025-07-26 23:03:38] 2025-07-27 03:03:24,533 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 23:03:38] 2025-07-27 03:03:37,922 | INFO     | PID=55766 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 23:03:38] 2025-07-27 03:03:37,922 | INFO     | .. there are 15 such processes running
[2025-07-26 23:03:38] 2025-07-27 03:03:37,923 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 23:03:38] 2025-07-27 03:03:37,923 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 23:03:38] 2025-07-27 03:03:37,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 23:03:38] 2025-07-27 03:03:37,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 23:03:38] 2025-07-27 03:03:37,923 | INFO     | [monitor] control thread has ended
[2025-07-26 23:03:38] 2025-07-27 03:03:38,014 [wrapper] ==== pilot stdout END ====
[2025-07-26 23:03:38] 2025-07-27 03:03:38,016 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 23:03:38] 2025-07-27 03:03:38,019 [wrapper] pilotpid: 55766
[2025-07-26 23:03:38] 2025-07-27 03:03:38,021 [wrapper] Pilot exit status: 0
[2025-07-26 23:03:38] 2025-07-27 03:03:38,029 [wrapper] pandaids: 6745594792
[2025-07-26 23:03:38] 2025-07-27 03:03:38,112 [wrapper] cleanup supervisor_pilot  358624 55767
[2025-07-26 23:03:38] 2025-07-27 03:03:38,115 [wrapper] Test setup, not cleaning
[2025-07-26 23:03:38] 2025-07-27 03:03:38,117 [wrapper] apfmon messages muted
[2025-07-26 23:03:38] 2025-07-27 03:03:38,119 [wrapper] ==== wrapper stdout END ====
[2025-07-26 23:03:38] 2025-07-27 03:03:38,122 [wrapper] ==== wrapper stderr END ====
[2025-07-26 23:03:38]  *** Error codes and diagnostics ***
[2025-07-26 23:03:38]     "exeErrorCode": 0,
[2025-07-26 23:03:38]     "exeErrorDiag": "",
[2025-07-26 23:03:38]     "pilotErrorCode": 0,
[2025-07-26 23:03:38]     "pilotErrorDiag": "",
[2025-07-26 23:03:38]  *** Listing of results directory ***
[2025-07-26 23:03:38] total 434792
[2025-07-26 23:03:38] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 16:42 pilot3.tar.gz
[2025-07-26 23:03:38] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 16:46 queuedata.json
[2025-07-26 23:03:38] -rwx------. 1 boincer umatlas     36292 Jul 26 16:47 runpilot2-wrapper.sh
[2025-07-26 23:03:38] -rw-r--r--. 1 boincer umatlas       100 Jul 26 22:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 23:03:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 22:05 run_atlas
[2025-07-26 23:03:38] -rw-r--r--. 1 boincer umatlas       105 Jul 26 22:05 job.xml
[2025-07-26 23:03:38] -rw-r--r--. 2 boincer umatlas 228984611 Jul 26 22:05 EVNT.45743347._000636.pool.root.1
[2025-07-26 23:03:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 22:05 start_atlas.sh
[2025-07-26 23:03:38] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 22:05 shared
[2025-07-26 23:03:38] -rw-r--r--. 2 boincer umatlas    542900 Jul 26 22:05 input.tar.gz
[2025-07-26 23:03:38] -rw-r--r--. 1 boincer umatlas         0 Jul 26 22:05 boinc_lockfile
[2025-07-26 23:03:38] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 22:05 pandaJob.out
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas    980125 Jul 26 22:05 agis_schedconf.cvmfs.json
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas   1593052 Jul 26 22:05 agis_ddmendpoints.agis.ALL.json
[2025-07-26 23:03:38] drwx------. 4 boincer umatlas      4096 Jul 26 22:05 pilot3
[2025-07-26 23:03:38] -rw-r--r--. 1 boincer umatlas      7172 Jul 26 22:58 init_data.xml
[2025-07-26 23:03:38] -rw-r--r--. 1 boincer umatlas       530 Jul 26 23:02 boinc_task_state.xml
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas 211049672 Jul 26 23:02 HITS.45743349._044200.pool.root.1
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas      1028 Jul 26 23:02 memory_monitor_summary.json
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas    304311 Jul 26 23:03 log.45743349._044200.job.log.tgz.1
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas      7765 Jul 26 23:03 heartbeat.json
[2025-07-26 23:03:38] -rw-r--r--. 1 boincer umatlas        27 Jul 26 23:03 wrapper_checkpoint.txt
[2025-07-26 23:03:38] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 23:03 boinc_mmap_file
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas        95 Jul 26 23:03 pilot_heartbeat.json
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas       821 Jul 26 23:03 pilotlog.txt
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas    352274 Jul 26 23:03 log.45743349._044200.job.log.1
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas       357 Jul 26 23:03 output.list
[2025-07-26 23:03:38] -rw-r--r--. 1 boincer umatlas       620 Jul 26 23:03 runtime_log
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas    675840 Jul 26 23:03 result.tar.gz
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas       651 Jul 26 23:03 NrQLDmOz0z7n9Rq4apOajLDm4fhM0noT9bVof3QYDm7Q1KDmNp5LUo.diag
[2025-07-26 23:03:38] -rw-r--r--. 1 boincer umatlas      8660 Jul 26 23:03 runtime_log.err
[2025-07-26 23:03:38] -rw-r--r--. 1 boincer umatlas     21630 Jul 26 23:03 stderr.txt
[2025-07-26 23:03:38] HITS file was successfully produced:
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas 211049672 Jul 26 23:02 shared/HITS.pool.root.1
[2025-07-26 23:03:38]  *** Contents of shared directory: ***
[2025-07-26 23:03:38] total 430940
[2025-07-26 23:03:38] -rw-r--r--. 2 boincer umatlas 228984611 Jul 26 22:05 ATLAS.root_0
[2025-07-26 23:03:38] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 22:05 start_atlas.sh
[2025-07-26 23:03:38] -rw-r--r--. 2 boincer umatlas    542900 Jul 26 22:05 input.tar.gz
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas 211049672 Jul 26 23:02 HITS.pool.root.1
[2025-07-26 23:03:38] -rw-------. 1 boincer umatlas    675840 Jul 26 23:03 result.tar.gz
23:03:39 (50136): run_atlas exited; CPU time 25619.245043
23:03:39 (50136): called boinc_finish(0)

</stderr_txt>
]]>

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