Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:45:14 (4156093): wrapper (7.7.26015): starting
21:45:14 (4156093): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 21:45:14] Arguments: --nthreads 8
[2025-07-26 21:45:14] Threads: 8
[2025-07-26 21:45:14] Checking for CVMFS
[2025-07-26 21:45:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 21:45:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 21:45:14] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 21:45:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 21:45:14] 2.13.1.0 2445429 3690 94252 148795 2 188 34725536 40960001 13740 16776704 0 59055889 99.999 130714 60571 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 21:45:14] CVMFS is ok
[2025-07-26 21:45:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 21:45:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 21:45:14] Further information can be found at the LHC@home message board.
[2025-07-26 21:45:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 21:45:14] Checking for apptainer binary...
[2025-07-26 21:45:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 21:45:14] Running /usr/bin/apptainer --version
[2025-07-26 21:45:14] apptainer version 1.4.1-1.el9
[2025-07-26 21:45:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 21:45:15] c-208-40.aglt2.org
[2025-07-26 21:45:15] apptainer works
[2025-07-26 21:45:15] Set ATHENA_PROC_NUMBER=8
[2025-07-26 21:45:15] Set ATHENA_CORE_NUMBER=8
[2025-07-26 21:45:15] Starting ATLAS job with PandaID=6745502374
[2025-07-26 21:45:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 22:43:16]  *** The last 200 lines of the pilot log: ***
[2025-07-26 22:43:16]  protocol_id=None
[2025-07-26 22:43:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 22:43:16]  replicas=None
[2025-07-26 22:43:16]  scope=mc23_13p6TeV
[2025-07-26 22:43:16]  status=None
[2025-07-26 22:43:16]  status_code=0
[2025-07-26 22:43:16]  storage_token=
[2025-07-26 22:43:16]  surl=/tmp/boinchome/slots/13/PanDA_Pilot-6745502374/log.45743349._043903.job.log.tgz.1
[2025-07-26 22:43:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1f/95/log.45743349._043903.job.log.tgz.1
[2025-07-26 22:43:16]  workdir=None
[2025-07-26 22:43:16] ]
[2025-07-26 22:43:16] 2025-07-27 02:42:35,273 | INFO     | transferring file log.45743349._043903.job.log.tgz.1 from /tmp/boinchome/slots/13/PanDA_Pilot-6745502374/log.45743349._043903.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-26 22:43:16] 2025-07-27 02:42:35,273 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/13/PanDA_Pilot-6745502374/log.45743349._043903.job.log.tgz.1 /tmp/boinchome/slots/13/log.45743349._043903.j
[2025-07-26 22:43:16] 2025-07-27 02:42:35,289 | INFO     | adding to output.list: log.45743349._043903.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1f/95/log.45743349._043903.job.log.tg
[2025-07-26 22:43:16] 2025-07-27 02:42:35,289 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 22:43:16] 2025-07-27 02:42:35,289 | INFO     | summary of transferred files:
[2025-07-26 22:43:16] 2025-07-27 02:42:35,289 | INFO     |  -- lfn=log.45743349._043903.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 22:43:16] 2025-07-27 02:42:35,290 | INFO     | stage-out finished correctly
[2025-07-26 22:43:16] 2025-07-27 02:42:36,963 | INFO     | monitor loop #254: job 0:6745502374 is in state 'finished'
[2025-07-26 22:43:16] 2025-07-27 02:42:36,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 22:43:16] 2025-07-27 02:42:37,318 | INFO     | PID=4159676 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 22:43:16] 2025-07-27 02:42:37,318 | INFO     | .. there are 16 such processes running
[2025-07-26 22:43:16] 2025-07-27 02:42:38,383 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 22:43:16] 2025-07-27 02:42:39,466 | INFO     | monitor loop #255: job 0:6745502374 is in state 'finished'
[2025-07-26 22:43:16] 2025-07-27 02:42:39,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 22:43:16] 2025-07-27 02:42:39,938 | INFO     | job 6745502374 has state=finished
[2025-07-26 22:43:16] 2025-07-27 02:42:39,938 | INFO     | preparing for final server update for job 6745502374 in state='finished'
[2025-07-26 22:43:16] 2025-07-27 02:42:39,939 | INFO     | this job has now completed (state=finished)
[2025-07-26 22:43:16] 2025-07-27 02:42:39,939 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 22:43:16] 2025-07-27 02:42:39,939 | INFO     | log transfer has been attempted: DONE
[2025-07-26 22:43:16] 2025-07-27 02:42:39,939 | INFO     | job 6745502374 has finished - writing final server update
[2025-07-26 22:43:16] 2025-07-27 02:42:39,939 | INFO     | total number of processed events: 400 (read)
[2025-07-26 22:43:16] 2025-07-27 02:42:39,940 | INFO     | executing command: lscpu
[2025-07-26 22:43:16] 2025-07-27 02:42:39,995 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 22:43:16] 2025-07-27 02:42:41,970 | INFO     | monitor loop #256: job 0:6745502374 is in state 'finished'
[2025-07-26 22:43:16] 2025-07-27 02:42:41,970 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 22:43:16] 2025-07-27 02:42:43,598 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 22:43:16] 2025-07-27 02:42:43,602 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.8766796874993
[2025-07-26 22:43:16] 2025-07-27 02:42:43,615 | INFO     | using path: /tmp/boinchome/slots/13/PanDA_Pilot-6745502374/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 22:43:16] 2025-07-27 02:42:43,616 | INFO     | extracted standard info from prmon json
[2025-07-26 22:43:16] 2025-07-27 02:42:43,616 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 22:43:16] 2025-07-27 02:42:43,616 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 22:43:16] 2025-07-27 02:42:43,616 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 22:43:16] 2025-07-27 02:42:43,616 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 22:43:16] 2025-07-27 02:42:43,617 | INFO     | fitting pss+swap vs Time
[2025-07-26 22:43:16] 2025-07-27 02:42:43,617 | INFO     | sum of square deviations: 36465800.0
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | sum of deviations: -244939522.00000003
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | mean x: 1753582518.0
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | mean y: 2517443.612244898
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | -- intersect: 11781270789.116156
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | intersect: 11781270789.116156
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | chi2: 0.0010228005959071443
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | -- intersect: 11781270789.116156
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | current memory leak: -6.72 B/s (using 49 data points, chi2=0.00)
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | could have reported an average CPU frequency of 3796 MHz (5 samples)
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | ..............................
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | . Timing measurements:
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | . get job = 0 s
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | . initial setup = 2 s
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | . payload setup = 5 s
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | . stage-in = 0 s
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | . payload execution = 3406 s
[2025-07-26 22:43:16] 2025-07-27 02:42:43,618 | INFO     | . stage-out = 0 s
[2025-07-26 22:43:16] 2025-07-27 02:42:43,619 | INFO     | . log creation = 0 s
[2025-07-26 22:43:16] 2025-07-27 02:42:43,619 | INFO     | ..............................
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | 
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | job summary report
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | --------------------------------------------------
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | PanDA job id: 6745502374
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | task id: 45743349
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | errors: (none)
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | pilot state: finished 
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | transexitcode: 0
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | exeerrorcode: 0
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | exeerrordiag: 
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | exitcode: 0
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | exitmsg: OK
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | cpuconsumptiontime: 24998 s
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | nevents: 400
[2025-07-26 22:43:16] 2025-07-27 02:42:43,676 | INFO     | neventsw: 0
[2025-07-26 22:43:16] 2025-07-27 02:42:43,677 | INFO     | pid: 4166903
[2025-07-26 22:43:16] 2025-07-27 02:42:43,677 | INFO     | pgrp: 4166903
[2025-07-26 22:43:16] 2025-07-27 02:42:43,677 | INFO     | corecount: 8
[2025-07-26 22:43:16] 2025-07-27 02:42:43,677 | INFO     | event service: False
[2025-07-26 22:43:16] 2025-07-27 02:42:43,677 | INFO     | sizes: {0: 2397475, 4: 2397737, 11: 2397765, 3415: 2423442, 3416: 2432442, 3420: 2432498, 3425: 2432852}
[2025-07-26 22:43:16] 2025-07-27 02:42:43,677 | INFO     | --------------------------------------------------
[2025-07-26 22:43:16] 2025-07-27 02:42:43,677 | INFO     | 
[2025-07-26 22:43:16] 2025-07-27 02:42:43,677 | INFO     | executing command: ls -lF /tmp/boinchome/slots/13
[2025-07-26 22:43:16] 2025-07-27 02:42:43,694 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,694 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,694 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,694 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,694 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,694 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,694 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,694 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,695 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,695 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,695 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,695 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,695 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,695 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,695 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,695 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,695 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,695 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 22:43:16] 2025-07-27 02:42:43,695 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,695 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 22:43:16] 2025-07-27 02:42:43,695 | INFO     | job 6745502374 has completed (purged errors)
[2025-07-26 22:43:16] 2025-07-27 02:42:43,695 | INFO     | overall cleanup function is called
[2025-07-26 22:43:16] 2025-07-27 02:42:44,703 | INFO     | --- collectZombieJob: --- 10, [4166903]
[2025-07-26 22:43:16] 2025-07-27 02:42:44,703 | INFO     | zombie collector waiting for pid 4166903
[2025-07-26 22:43:16] 2025-07-27 02:42:44,703 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 22:43:16] 2025-07-27 02:42:44,703 | INFO     | collected zombie processes
[2025-07-26 22:43:16] 2025-07-27 02:42:44,703 | INFO     | will attempt to kill all subprocesses of pid=4166903
[2025-07-26 22:43:16] 2025-07-27 02:42:45,049 | INFO     | process IDs to be killed: [4166903] (in reverse order)
[2025-07-26 22:43:16] 2025-07-27 02:42:45,160 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 22:43:16] 2025-07-27 02:42:45,160 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 22:43:16] 2025-07-27 02:42:45,176 | INFO     | did not find any defunct processes belonging to 4166903
[2025-07-26 22:43:16] 2025-07-27 02:42:45,190 | INFO     | did not find any defunct processes belonging to 4166903
[2025-07-26 22:43:16] 2025-07-27 02:42:45,190 | INFO     | ready for new job
[2025-07-26 22:43:16] 2025-07-27 02:42:45,190 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 22:43:16] 2025-07-27 02:42:45,191 | INFO     | ***************************************
[2025-07-26 22:43:16] 2025-07-27 02:42:45,192 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 22:43:16] 2025-07-27 02:42:45,192 | INFO     | ***************************************
[2025-07-26 22:43:16] 2025-07-27 02:42:45,192 | INFO     | 
[2025-07-26 22:43:16] 2025-07-27 02:42:45,196 | INFO     | architecture information:
[2025-07-26 22:43:16] 2025-07-27 02:42:45,196 | INFO     | executing command: cat /etc/os-release
[2025-07-26 22:43:16] 2025-07-27 02:42:45,210 | INFO     | cat /etc/os-release:
[2025-07-26 22:43:16] NAME="CentOS Linux"
[2025-07-26 22:43:16] VERSION="7 (Core)"
[2025-07-26 22:43:16] ID="centos"
[2025-07-26 22:43:16] ID_LIKE="rhel fedora"
[2025-07-26 22:43:16] VERSION_ID="7"
[2025-07-26 22:43:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 22:43:16] ANSI_COLOR="0;31"
[2025-07-26 22:43:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 22:43:16] HOME_URL="https://www.centos.org/"
[2025-07-26 22:43:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 22:43:16] 
[2025-07-26 22:43:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 22:43:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 22:43:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 22:43:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 22:43:16] 
[2025-07-26 22:43:16] 2025-07-27 02:42:45,210 | INFO     | ***************************************
[2025-07-26 22:43:16] 2025-07-27 02:42:45,712 | INFO     | executing command: df -mP /tmp/boinchome/slots/13
[2025-07-26 22:43:16] 2025-07-27 02:42:45,726 | INFO     | sufficient remaining disk space (165731631104 B)
[2025-07-26 22:43:16] 2025-07-27 02:42:45,726 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 22:43:16] 2025-07-27 02:42:45,726 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 22:43:16] 2025-07-27 02:42:45,726 | INFO     | update_server=False
[2025-07-26 22:43:16] 2025-07-27 02:42:45,726 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 22:43:16] 2025-07-27 02:42:45,727 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 22:43:16] 2025-07-27 02:42:45,727 | INFO     | aborting loop
[2025-07-26 22:43:16] 2025-07-27 02:42:45,863 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 22:43:16] 2025-07-27 02:42:46,172 | INFO     | all data control threads have been joined
[2025-07-26 22:43:16] 2025-07-27 02:42:46,732 | INFO     | [job] job monitor thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:46,732 | INFO     | [job] retrieve thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:46,853 | INFO     | [job] validate thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:46,894 | INFO     | all job control threads have been joined
[2025-07-26 22:43:16] 2025-07-27 02:42:46,940 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:46,976 | INFO     | all payload control threads have been joined
[2025-07-26 22:43:16] 2025-07-27 02:42:47,027 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:47,115 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:47,178 | INFO     | [data] control thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:47,705 | INFO     | [payload] failed_post thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:47,855 | INFO     | [data] copytool_in thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:47,868 | INFO     | [data] copytool_out thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:47,897 | INFO     | [job] control thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:47,981 | INFO     | [payload] control thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:48,194 | INFO     | [payload] validate_post thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:48,682 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 22:43:16] 2025-07-27 02:42:48,951 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 22:43:16] 2025-07-27 02:42:49,687 | INFO     | [job] queue monitor thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:52,958 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:56,718 | INFO     | job.realtimelogging is not enabled
[2025-07-26 22:43:16] 2025-07-27 02:42:57,723 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 22:43:16] 2025-07-27 02:42:58,817 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140279670613824)>', '<ExcThread(monitor, started 140279025739520)>']
[2025-07-26 22:43:16] 2025-07-27 02:43:03,842 | INFO     | all workflow threads have been joined
[2025-07-26 22:43:16] 2025-07-27 02:43:03,842 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 22:43:16] 2025-07-27 02:43:03,842 | INFO     | traces error code: 0
[2025-07-26 22:43:16] 2025-07-27 02:43:03,842 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 22:43:16] 2025-07-27 02:43:15,849 | INFO     | PID=4159676 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 22:43:16] 2025-07-27 02:43:15,849 | INFO     | .. there are 16 such processes running
[2025-07-26 22:43:16] 2025-07-27 02:43:15,849 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 22:43:16] 2025-07-27 02:43:15,849 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 22:43:16] 2025-07-27 02:43:15,849 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 22:43:16] 2025-07-27 02:43:15,849 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 22:43:16] 2025-07-27 02:43:15,849 | INFO     | [monitor] control thread has ended
[2025-07-26 22:43:16] 2025-07-27 02:43:15,933 [wrapper] ==== pilot stdout END ====
[2025-07-26 22:43:16] 2025-07-27 02:43:15,936 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 22:43:16] 2025-07-27 02:43:15,938 [wrapper] pilotpid: 4159676
[2025-07-26 22:43:16] 2025-07-27 02:43:15,940 [wrapper] Pilot exit status: 0
[2025-07-26 22:43:16] 2025-07-27 02:43:15,949 [wrapper] pandaids: 6745502374
[2025-07-26 22:43:16] 2025-07-27 02:43:16,029 [wrapper] cleanup supervisor_pilot  256895 4159677
[2025-07-26 22:43:16] 2025-07-27 02:43:16,032 [wrapper] Test setup, not cleaning
[2025-07-26 22:43:16] 2025-07-27 02:43:16,035 [wrapper] apfmon messages muted
[2025-07-26 22:43:16] 2025-07-27 02:43:16,038 [wrapper] ==== wrapper stdout END ====
[2025-07-26 22:43:16] 2025-07-27 02:43:16,040 [wrapper] ==== wrapper stderr END ====
[2025-07-26 22:43:16]  *** Error codes and diagnostics ***
[2025-07-26 22:43:16]     "exeErrorCode": 0,
[2025-07-26 22:43:16]     "exeErrorDiag": "",
[2025-07-26 22:43:16]     "pilotErrorCode": 0,
[2025-07-26 22:43:16]     "pilotErrorDiag": "",
[2025-07-26 22:43:16]  *** Listing of results directory ***
[2025-07-26 22:43:16] total 351672
[2025-07-26 22:43:16] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 16:19 pilot3.tar.gz
[2025-07-26 22:43:16] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 16:23 queuedata.json
[2025-07-26 22:43:16] -rwx------. 1 boincer umatlas     36292 Jul 26 16:24 runpilot2-wrapper.sh
[2025-07-26 22:43:16] -rw-r--r--. 1 boincer umatlas       100 Jul 26 21:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 22:43:16] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 21:45 run_atlas
[2025-07-26 22:43:16] -rw-r--r--. 1 boincer umatlas       105 Jul 26 21:45 job.xml
[2025-07-26 22:43:16] -rw-r--r--. 2 boincer umatlas 146636671 Jul 26 21:45 EVNT.45743347._002506.pool.root.1
[2025-07-26 22:43:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 21:45 start_atlas.sh
[2025-07-26 22:43:16] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 21:45 shared
[2025-07-26 22:43:16] -rw-r--r--. 2 boincer umatlas    542892 Jul 26 21:45 input.tar.gz
[2025-07-26 22:43:16] -rw-r--r--. 1 boincer umatlas         0 Jul 26 21:45 boinc_lockfile
[2025-07-26 22:43:16] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 21:45 pandaJob.out
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas    980125 Jul 26 21:45 agis_schedconf.cvmfs.json
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas   1593052 Jul 26 21:45 agis_ddmendpoints.agis.ALL.json
[2025-07-26 22:43:16] drwx------. 4 boincer umatlas      4096 Jul 26 21:45 pilot3
[2025-07-26 22:43:16] -rw-r--r--. 1 boincer umatlas      7173 Jul 26 22:36 init_data.xml
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas 208309366 Jul 26 22:42 HITS.45743349._043903.pool.root.1
[2025-07-26 22:43:16] -rw-r--r--. 1 boincer umatlas       529 Jul 26 22:42 boinc_task_state.xml
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas      1029 Jul 26 22:42 memory_monitor_summary.json
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas        95 Jul 26 22:42 pilot_heartbeat.json
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas    295765 Jul 26 22:42 log.45743349._043903.job.log.tgz.1
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas      7766 Jul 26 22:42 heartbeat.json
[2025-07-26 22:43:16] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 22:43 boinc_mmap_file
[2025-07-26 22:43:16] -rw-r--r--. 1 boincer umatlas        27 Jul 26 22:43 wrapper_checkpoint.txt
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas       823 Jul 26 22:43 pilotlog.txt
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas    351983 Jul 26 22:43 log.45743349._043903.job.log.1
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas       357 Jul 26 22:43 output.list
[2025-07-26 22:43:16] -rw-r--r--. 1 boincer umatlas       620 Jul 26 22:43 runtime_log
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas    665600 Jul 26 22:43 result.tar.gz
[2025-07-26 22:43:16] -rw-r--r--. 1 boincer umatlas      8674 Jul 26 22:43 runtime_log.err
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas       651 Jul 26 22:43 7muMDmQc0z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmlP1KDmullftn.diag
[2025-07-26 22:43:16] -rw-r--r--. 1 boincer umatlas     21893 Jul 26 22:43 stderr.txt
[2025-07-26 22:43:16] HITS file was successfully produced:
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas 208309366 Jul 26 22:42 shared/HITS.pool.root.1
[2025-07-26 22:43:16]  *** Contents of shared directory: ***
[2025-07-26 22:43:16] total 347832
[2025-07-26 22:43:16] -rw-r--r--. 2 boincer umatlas 146636671 Jul 26 21:45 ATLAS.root_0
[2025-07-26 22:43:16] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 21:45 start_atlas.sh
[2025-07-26 22:43:16] -rw-r--r--. 2 boincer umatlas    542892 Jul 26 21:45 input.tar.gz
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas 208309366 Jul 26 22:42 HITS.pool.root.1
[2025-07-26 22:43:16] -rw-------. 1 boincer umatlas    665600 Jul 26 22:43 result.tar.gz
22:43:17 (4156093): run_atlas exited; CPU time 25064.181808
22:43:17 (4156093): called boinc_finish(0)

</stderr_txt>
]]>

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