Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
21:29:40 (1898310): wrapper (7.7.26015): starting
21:29:40 (1898310): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 21:29:40] Arguments: --nthreads 12
[2025-07-27 21:29:40] Threads: 12
[2025-07-27 21:29:40] Checking for CVMFS
[2025-07-27 21:29:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 21:29:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 21:29:40] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 21:29:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 21:29:40] 2.13.1.0 50093 8173 75392 148825 3 57 3471881 4096000 1306 130560 0 16370866 99.996 299344 287 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-07-27 21:29:40] CVMFS is ok
[2025-07-27 21:29:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 21:29:40] Checking for apptainer binary...
[2025-07-27 21:29:40] apptainer is not installed, using version from CVMFS
[2025-07-27 21:29:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 21:29:40] ryzen7
[2025-07-27 21:29:40] apptainer works
[2025-07-27 21:29:40] Set ATHENA_PROC_NUMBER=12
[2025-07-27 21:29:40] Set ATHENA_CORE_NUMBER=12
[2025-07-27 21:29:40] Starting ATLAS job with PandaID=6745503289
[2025-07-27 21:29:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 23:00:17]  *** The last 200 lines of the pilot log: ***
[2025-07-27 23:00:17]  workdir=None
[2025-07-27 23:00:17] ]
[2025-07-27 23:00:17] 2025-07-27 23:00:01,404 | INFO     | transferring file log.45743349._044093.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745503289/log.45743349._044093.job.log.tgz.1 t
[2025-07-27 23:00:17] 2025-07-27 23:00:01,404 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745503289/log.45743349._044093.job.log.tgz.1 /opt/boinc/instance_home
[2025-07-27 23:00:17] 2025-07-27 23:00:01,413 | INFO     | adding to output.list: log.45743349._044093.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/b1/log.45743349._044093.job.log.tg
[2025-07-27 23:00:17] 2025-07-27 23:00:01,414 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 23:00:17] 2025-07-27 23:00:01,414 | INFO     | summary of transferred files:
[2025-07-27 23:00:17] 2025-07-27 23:00:01,414 | INFO     |  -- lfn=log.45743349._044093.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 23:00:17] 2025-07-27 23:00:01,414 | INFO     | stage-out finished correctly
[2025-07-27 23:00:17] 2025-07-27 23:00:01,475 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 23:00:17] 2025-07-27 23:00:02,200 | INFO     | job 6745503289 has state=finished
[2025-07-27 23:00:17] 2025-07-27 23:00:02,200 | INFO     | preparing for final server update for job 6745503289 in state='finished'
[2025-07-27 23:00:17] 2025-07-27 23:00:02,201 | INFO     | this job has now completed (state=finished)
[2025-07-27 23:00:17] 2025-07-27 23:00:02,201 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 23:00:17] 2025-07-27 23:00:02,201 | INFO     | log transfer has been attempted: DONE
[2025-07-27 23:00:17] 2025-07-27 23:00:02,202 | INFO     | job 6745503289 has finished - writing final server update
[2025-07-27 23:00:17] 2025-07-27 23:00:02,202 | INFO     | total number of processed events: 400 (read)
[2025-07-27 23:00:17] 2025-07-27 23:00:02,202 | INFO     | executing command: lscpu
[2025-07-27 23:00:17] 2025-07-27 23:00:02,234 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 23:00:17] 2025-07-27 23:00:03,658 | INFO     | PID=1902045 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 23:00:17] 2025-07-27 23:00:03,658 | INFO     | .. there are 3 such processes running
[2025-07-27 23:00:17] 2025-07-27 23:00:03,802 | WARNING  | process 1910678 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 23:00:17] 2025-07-27 23:00:03,802 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745503289/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:00:17] 2025-07-27 23:00:03,803 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745503289/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:00:17] 2025-07-27 23:00:03,803 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3721510 B
[2025-07-27 23:00:17] 2025-07-27 23:00:03,804 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16309 B
[2025-07-27 23:00:17] 2025-07-27 23:00:03,804 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-07-27 23:00:17] 2025-07-27 23:00:04,382 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 23:00:17] 2025-07-27 23:00:04,387 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4109.7336875
[2025-07-27 23:00:17] 2025-07-27 23:00:04,390 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745503289/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 23:00:17] 2025-07-27 23:00:04,390 | INFO     | extracted standard info from prmon json
[2025-07-27 23:00:17] 2025-07-27 23:00:04,390 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 23:00:17] 2025-07-27 23:00:04,390 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 23:00:17] 2025-07-27 23:00:04,391 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 23:00:17] 2025-07-27 23:00:04,391 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 23:00:17] 2025-07-27 23:00:04,391 | INFO     | sufficient remaining disk space (150002991104 B)
[2025-07-27 23:00:17] 2025-07-27 23:00:04,392 | INFO     | fitting pss+swap vs Time
[2025-07-27 23:00:17] 2025-07-27 23:00:04,392 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 23:00:17] 2025-07-27 23:00:04,392 | INFO     | sum of square deviations: 170944600.5
[2025-07-27 23:00:17] 2025-07-27 23:00:04,393 | INFO     | sum of deviations: -6089848776.499999
[2025-07-27 23:00:17] 2025-07-27 23:00:04,393 | INFO     | mean x: 1753654581.5
[2025-07-27 23:00:17] 2025-07-27 23:00:04,393 | INFO     | mean y: 2748818.8414634145
[2025-07-27 23:00:17] 2025-07-27 23:00:04,393 | INFO     | -- intersect: 62476153514.36674
[2025-07-27 23:00:17] 2025-07-27 23:00:04,393 | INFO     | intersect: 62476153514.36674
[2025-07-27 23:00:17] 2025-07-27 23:00:04,393 | INFO     | chi2: 0.016824980506244824
[2025-07-27 23:00:17] 2025-07-27 23:00:04,393 | INFO     | -- intersect: 62476153514.36674
[2025-07-27 23:00:17] 2025-07-27 23:00:04,394 | INFO     | current memory leak: -35.62 B/s (using 82 data points, chi2=0.02)
[2025-07-27 23:00:17] 2025-07-27 23:00:04,394 | INFO     | could have reported an average CPU frequency of 4116 MHz (6 samples)
[2025-07-27 23:00:17] 2025-07-27 23:00:04,394 | INFO     | ..............................
[2025-07-27 23:00:17] 2025-07-27 23:00:04,394 | INFO     | . Timing measurements:
[2025-07-27 23:00:17] 2025-07-27 23:00:04,394 | INFO     | . get job = 0 s
[2025-07-27 23:00:17] 2025-07-27 23:00:04,394 | INFO     | . initial setup = 1 s
[2025-07-27 23:00:17] 2025-07-27 23:00:04,394 | INFO     | . payload setup = 3 s
[2025-07-27 23:00:17] 2025-07-27 23:00:04,394 | INFO     | . stage-in = 0 s
[2025-07-27 23:00:17] 2025-07-27 23:00:04,394 | INFO     | . payload execution = 5393 s
[2025-07-27 23:00:17] 2025-07-27 23:00:04,395 | INFO     | . stage-out = 0 s
[2025-07-27 23:00:17] 2025-07-27 23:00:04,395 | INFO     | . log creation = 0 s
[2025-07-27 23:00:17] 2025-07-27 23:00:04,395 | INFO     | ..............................
[2025-07-27 23:00:17] 2025-07-27 23:00:04,426 | INFO     | size of work directory /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745503289: 4024264 B (within 2537553920 B limit)
[2025-07-27 23:00:17] 2025-07-27 23:00:04,446 | INFO     | pfn file=/opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745503289/HITS.45743349._044093.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 23:00:17] 2025-07-27 23:00:04,451 | INFO     | total size of present files: 0 B (workdir size: 4024264 B)
[2025-07-27 23:00:17] 2025-07-27 23:00:04,460 | INFO     | output file size check: skipping output file /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745503289/HITS.45743349._044093.pool.root.1 since it does n
[2025-07-27 23:00:17] 2025-07-27 23:00:04,530 | INFO     | number of running child processes to parent process 1910678: 1
[2025-07-27 23:00:17] 2025-07-27 23:00:04,531 | INFO     | maximum number of monitored processes: 6
[2025-07-27 23:00:17] 2025-07-27 23:00:04,531 | INFO     | aborting job monitoring since job object (job id=6745503289) has expired
[2025-07-27 23:00:17] 2025-07-27 23:00:04,958 | INFO     | 
[2025-07-27 23:00:17] 2025-07-27 23:00:04,958 | INFO     | job summary report
[2025-07-27 23:00:17] 2025-07-27 23:00:04,958 | INFO     | --------------------------------------------------
[2025-07-27 23:00:17] 2025-07-27 23:00:04,958 | INFO     | PanDA job id: 6745503289
[2025-07-27 23:00:17] 2025-07-27 23:00:04,958 | INFO     | task id: 45743349
[2025-07-27 23:00:17] 2025-07-27 23:00:04,958 | INFO     | errors: (none)
[2025-07-27 23:00:17] 2025-07-27 23:00:04,958 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 23:00:17] 2025-07-27 23:00:04,958 | INFO     | pilot state: finished 
[2025-07-27 23:00:17] 2025-07-27 23:00:04,958 | INFO     | transexitcode: 0
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | exeerrorcode: 0
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | exeerrordiag: 
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | exitcode: 0
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | exitmsg: OK
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | cpuconsumptiontime: 29633 s
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | nevents: 400
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | neventsw: 0
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | pid: 1910678
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | pgrp: 1910678
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | corecount: 12
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | event service: False
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | sizes: {0: 2397321, 1: 2397520, 3: 2397782, 11: 2397810, 5400: 2424441, 5401: 2424440, 5402: 2433724, 5405: 2433862}
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | --------------------------------------------------
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | 
[2025-07-27 23:00:17] 2025-07-27 23:00:04,959 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-07-27 23:00:17] 2025-07-27 23:00:04,970 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,970 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,970 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,970 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,970 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,970 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,970 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,971 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,971 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,971 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,971 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,971 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,971 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,971 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,971 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,971 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,971 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,971 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 23:00:17] 2025-07-27 23:00:04,971 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,971 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 23:00:17] 2025-07-27 23:00:04,971 | INFO     | job 6745503289 has completed (purged errors)
[2025-07-27 23:00:17] 2025-07-27 23:00:04,972 | INFO     | overall cleanup function is called
[2025-07-27 23:00:17] 2025-07-27 23:00:05,978 | INFO     | --- collectZombieJob: --- 10, [1910678]
[2025-07-27 23:00:17] 2025-07-27 23:00:05,978 | INFO     | zombie collector waiting for pid 1910678
[2025-07-27 23:00:17] 2025-07-27 23:00:05,978 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 23:00:17] 2025-07-27 23:00:05,978 | INFO     | collected zombie processes
[2025-07-27 23:00:17] 2025-07-27 23:00:05,978 | INFO     | will attempt to kill all subprocesses of pid=1910678
[2025-07-27 23:00:17] 2025-07-27 23:00:06,049 | INFO     | process IDs to be killed: [1910678] (in reverse order)
[2025-07-27 23:00:17] 2025-07-27 23:00:06,078 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 23:00:17] 2025-07-27 23:00:06,078 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 23:00:17] 2025-07-27 23:00:06,080 | INFO     | did not find any defunct processes belonging to 1910678
[2025-07-27 23:00:17] 2025-07-27 23:00:06,082 | INFO     | did not find any defunct processes belonging to 1910678
[2025-07-27 23:00:17] 2025-07-27 23:00:06,082 | INFO     | ready for new job
[2025-07-27 23:00:17] 2025-07-27 23:00:06,082 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 23:00:17] 2025-07-27 23:00:06,083 | INFO     | ***************************************
[2025-07-27 23:00:17] 2025-07-27 23:00:06,083 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 23:00:17] 2025-07-27 23:00:06,083 | INFO     | ***************************************
[2025-07-27 23:00:17] 2025-07-27 23:00:06,083 | INFO     | 
[2025-07-27 23:00:17] 2025-07-27 23:00:06,102 | INFO     | architecture information:
[2025-07-27 23:00:17] 2025-07-27 23:00:06,103 | INFO     | executing command: cat /etc/os-release
[2025-07-27 23:00:17] 2025-07-27 23:00:06,109 | INFO     | cat /etc/os-release:
[2025-07-27 23:00:17] NAME="CentOS Linux"
[2025-07-27 23:00:17] VERSION="7 (Core)"
[2025-07-27 23:00:17] ID="centos"
[2025-07-27 23:00:17] ID_LIKE="rhel fedora"
[2025-07-27 23:00:17] VERSION_ID="7"
[2025-07-27 23:00:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 23:00:17] ANSI_COLOR="0;31"
[2025-07-27 23:00:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 23:00:17] HOME_URL="https://www.centos.org/"
[2025-07-27 23:00:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 23:00:17] 
[2025-07-27 23:00:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 23:00:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 23:00:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 23:00:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 23:00:17] 
[2025-07-27 23:00:17] 2025-07-27 23:00:06,109 | INFO     | ***************************************
[2025-07-27 23:00:17] 2025-07-27 23:00:06,612 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-07-27 23:00:17] 2025-07-27 23:00:06,620 | INFO     | sufficient remaining disk space (150007185408 B)
[2025-07-27 23:00:17] 2025-07-27 23:00:06,620 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 23:00:17] 2025-07-27 23:00:06,620 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 23:00:17] 2025-07-27 23:00:06,620 | INFO     | update_server=False
[2025-07-27 23:00:17] 2025-07-27 23:00:06,620 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 23:00:17] 2025-07-27 23:00:06,621 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-27 23:00:17] 2025-07-27 23:00:06,621 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 23:00:17] 2025-07-27 23:00:06,621 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 23:00:17] 2025-07-27 23:00:06,621 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 23:00:17] 2025-07-27 23:00:06,983 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 23:00:17] 2025-07-27 23:00:07,033 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 23:00:17] 2025-07-27 23:00:07,034 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 23:00:17] 2025-07-27 23:00:07,034 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:00:17] 2025-07-27 23:00:07,034 | INFO     | will abort loop
[2025-07-27 23:00:17] 2025-07-27 23:00:07,542 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 23:00:17] 2025-07-27 23:00:07,574 | INFO     | all data control threads have been joined
[2025-07-27 23:00:17] 2025-07-27 23:00:07,622 | INFO     | [job] retrieve thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:07,678 | INFO     | [job] validate thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:07,854 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:07,862 | INFO     | all payload control threads have been joined
[2025-07-27 23:00:17] 2025-07-27 23:00:07,910 | INFO     | [payload] failed_post thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:07,963 | INFO     | [data] copytool_in thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:08,039 | INFO     | [job] job monitor thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:08,042 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:08,134 | INFO     | all job control threads have been joined
[2025-07-27 23:00:17] 2025-07-27 23:00:08,578 | INFO     | [data] control thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:08,822 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:08,866 | INFO     | [payload] control thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:08,924 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:08,962 | INFO     | [payload] validate_post thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:08,987 | INFO     | [data] copytool_out thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:09,138 | INFO     | [job] control thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:09,466 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 23:00:17] 2025-07-27 23:00:10,470 | INFO     | [job] queue monitor thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:11,543 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 23:00:17] 2025-07-27 23:00:12,364 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140109080147776)>', '<ExcThread(monitor, started 140108787336960)>']
[2025-07-27 23:00:17] 2025-07-27 23:00:12,645 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 23:00:17] 2025-07-27 23:00:12,645 | INFO     | [monitor] control thread has ended
[2025-07-27 23:00:17] 2025-07-27 23:00:17,389 | INFO     | all workflow threads have been joined
[2025-07-27 23:00:17] 2025-07-27 23:00:17,389 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 23:00:17] 2025-07-27 23:00:17,392 | INFO     | traces error code: 0
[2025-07-27 23:00:17] 2025-07-27 23:00:17,392 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 23:00:17] 2025-07-27 23:00:17,440 [wrapper] ==== pilot stdout END ====
[2025-07-27 23:00:17] 2025-07-27 23:00:17,442 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 23:00:17] 2025-07-27 23:00:17,443 [wrapper] pilotpid: 1902045
[2025-07-27 23:00:17] 2025-07-27 23:00:17,445 [wrapper] Pilot exit status: 0
[2025-07-27 23:00:17] 2025-07-27 23:00:17,450 [wrapper] pandaids: 6745503289
[2025-07-27 23:00:17] 2025-07-27 23:00:17,470 [wrapper] cleanup supervisor_pilot 1985055 1902046
[2025-07-27 23:00:17] 2025-07-27 23:00:17,471 [wrapper] Test setup, not cleaning
[2025-07-27 23:00:17] 2025-07-27 23:00:17,473 [wrapper] apfmon messages muted
[2025-07-27 23:00:17] 2025-07-27 23:00:17,475 [wrapper] ==== wrapper stdout END ====
[2025-07-27 23:00:17] 2025-07-27 23:00:17,476 [wrapper] ==== wrapper stderr END ====
[2025-07-27 23:00:17]  *** Error codes and diagnostics ***
[2025-07-27 23:00:17]     "exeErrorCode": 0,
[2025-07-27 23:00:17]     "exeErrorDiag": "",
[2025-07-27 23:00:17]     "pilotErrorCode": 0,
[2025-07-27 23:00:17]     "pilotErrorDiag": "",
[2025-07-27 23:00:17]  *** Listing of results directory ***
[2025-07-27 23:00:17] total 361296
[2025-07-27 23:00:17] -rw-r--r-- 1 boinc boinc    530466 Jul 26 20:19 pilot3.tar.gz
[2025-07-27 23:00:17] -rw-r--r-- 1 boinc boinc      5112 Jul 26 20:35 queuedata.json
[2025-07-27 23:00:17] -rwx------ 1 boinc boinc     36292 Jul 26 20:36 runpilot2-wrapper.sh
[2025-07-27 23:00:17] -rw-rw-r-- 1 boinc boinc       100 Jul 27 21:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 23:00:17] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 21:29 run_atlas
[2025-07-27 23:00:17] -rw-rw-r-- 1 boinc boinc       105 Jul 27 21:29 job.xml
[2025-07-27 23:00:17] -rw-rw-r-- 1 boinc boinc      9702 Jul 27 21:29 init_data.xml
[2025-07-27 23:00:17] -rw-r--r-- 2 boinc boinc 145707753 Jul 27 21:29 EVNT.45743347._002519.pool.root.1
[2025-07-27 23:00:17] -rw-r--r-- 2 boinc boinc     15095 Jul 27 21:29 start_atlas.sh
[2025-07-27 23:00:17] drwxrwx--x 2 boinc boinc      4096 Jul 27 21:29 shared
[2025-07-27 23:00:17] -rw-r--r-- 2 boinc boinc    542883 Jul 27 21:29 input.tar.gz
[2025-07-27 23:00:17] -rw-rw-r-- 1 boinc boinc         0 Jul 27 21:29 boinc_lockfile
[2025-07-27 23:00:17] -rw-rw-r-- 1 boinc boinc      2560 Jul 27 21:29 pandaJob.out
[2025-07-27 23:00:17] -rw------- 1 boinc boinc    980117 Jul 27 21:29 agis_schedconf.cvmfs.json
[2025-07-27 23:00:17] -rw------- 1 boinc boinc   1593052 Jul 27 21:29 agis_ddmendpoints.agis.ALL.json
[2025-07-27 23:00:17] drwx------ 4 boinc boinc      4096 Jul 27 21:29 pilot3
[2025-07-27 23:00:17] -rw------- 1 boinc boinc 218567481 Jul 27 22:59 HITS.45743349._044093.pool.root.1
[2025-07-27 23:00:17] -rw-rw-r-- 1 boinc boinc      8192 Jul 27 22:59 boinc_mmap_file
[2025-07-27 23:00:17] -rw-rw-r-- 1 boinc boinc        27 Jul 27 22:59 wrapper_checkpoint.txt
[2025-07-27 23:00:17] -rw-rw-r-- 1 boinc boinc       529 Jul 27 22:59 boinc_task_state.xml
[2025-07-27 23:00:17] -rw------- 1 boinc boinc      1021 Jul 27 22:59 memory_monitor_summary.json
[2025-07-27 23:00:17] -rw------- 1 boinc boinc        95 Jul 27 22:59 pilot_heartbeat.json
[2025-07-27 23:00:17] -rw------- 1 boinc boinc    355459 Jul 27 23:00 log.45743349._044093.job.log.tgz.1
[2025-07-27 23:00:17] -rw------- 1 boinc boinc      7737 Jul 27 23:00 heartbeat.json
[2025-07-27 23:00:17] -rw------- 1 boinc boinc      4690 Jul 27 23:00 pilotlog.txt
[2025-07-27 23:00:17] -rw------- 1 boinc boinc    545833 Jul 27 23:00 log.45743349._044093.job.log.1
[2025-07-27 23:00:17] -rw------- 1 boinc boinc       357 Jul 27 23:00 output.list
[2025-07-27 23:00:17] -rw-rw-r-- 1 boinc boinc       620 Jul 27 23:00 runtime_log
[2025-07-27 23:00:17] -rw------- 1 boinc boinc    921600 Jul 27 23:00 result.tar.gz
[2025-07-27 23:00:17] -rw------- 1 boinc boinc       648 Jul 27 23:00 U5OLDmLo0z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmS4SLDmu5Wfyn.diag
[2025-07-27 23:00:17] -rw-rw-r-- 1 boinc boinc      8954 Jul 27 23:00 runtime_log.err
[2025-07-27 23:00:17] -rw-rw-r-- 1 boinc boinc     22519 Jul 27 23:00 stderr.txt
[2025-07-27 23:00:17] HITS file was successfully produced:
[2025-07-27 23:00:17] -rw------- 1 boinc boinc 218567481 Jul 27 22:59 shared/HITS.pool.root.1
[2025-07-27 23:00:17]  *** Contents of shared directory: ***
[2025-07-27 23:00:17] total 357200
[2025-07-27 23:00:17] -rw-r--r-- 2 boinc boinc 145707753 Jul 27 21:29 ATLAS.root_0
[2025-07-27 23:00:17] -rw-r--r-- 2 boinc boinc     15095 Jul 27 21:29 start_atlas.sh
[2025-07-27 23:00:17] -rw-r--r-- 2 boinc boinc    542883 Jul 27 21:29 input.tar.gz
[2025-07-27 23:00:17] -rw------- 1 boinc boinc 218567481 Jul 27 22:59 HITS.pool.root.1
[2025-07-27 23:00:17] -rw------- 1 boinc boinc    921600 Jul 27 23:00 result.tar.gz
23:00:19 (1898310): run_atlas exited; CPU time 29651.332095
23:00:19 (1898310): called boinc_finish(0)

</stderr_txt>
]]>

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