Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:12:31 (3626484): wrapper (7.7.26015): starting
23:12:31 (3626484): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 23:12:31] Arguments: --nthreads 12
[2025-07-26 23:12:31] Threads: 12
[2025-07-26 23:12:31] Checking for CVMFS
[2025-07-26 23:12:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 23:12:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 23:12:31] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 23:12:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 23:12:31] 2.13.0.0 1889558 17809 302920 148797 0 75 39597484 40960001 13783 16776704 1 51245292 99.816 41603606 29399 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 23:12:31] CVMFS is ok
[2025-07-26 23:12:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 23:12:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 23:12:31] Further information can be found at the LHC@home message board.
[2025-07-26 23:12:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 23:12:31] Checking for apptainer binary...
[2025-07-26 23:12:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 23:12:31] Running /usr/bin/apptainer --version
[2025-07-26 23:12:31] apptainer version 1.4.1-1.el9
[2025-07-26 23:12:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 23:12:31] c6-5-7-1.aglt2.org
[2025-07-26 23:12:31] apptainer works
[2025-07-26 23:12:31] Set ATHENA_PROC_NUMBER=12
[2025-07-26 23:12:31] Set ATHENA_CORE_NUMBER=12
[2025-07-26 23:12:31] Starting ATLAS job with PandaID=6745388406
[2025-07-26 23:12:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 00:44:03]  *** The last 200 lines of the pilot log: ***
[2025-07-27 00:44:03]  lfn=log.45743349._043455.job.log.tgz.1
[2025-07-27 00:44:03]  mtime=0
[2025-07-27 00:44:03]  protocol_id=None
[2025-07-27 00:44:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 00:44:03]  replicas=None
[2025-07-27 00:44:03]  scope=mc23_13p6TeV
[2025-07-27 00:44:03]  status=None
[2025-07-27 00:44:03]  status_code=0
[2025-07-27 00:44:03]  storage_token=
[2025-07-27 00:44:03]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745388406/log.45743349._043455.job.log.tgz.1
[2025-07-27 00:44:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/23/log.45743349._043455.job.log.tgz.1
[2025-07-27 00:44:03]  workdir=None
[2025-07-27 00:44:03] ]
[2025-07-27 00:44:03] 2025-07-27 04:43:23,080 | INFO     | transferring file log.45743349._043455.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745388406/log.45743349._043455.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-27 00:44:03] 2025-07-27 04:43:23,080 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745388406/log.45743349._043455.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._043455.job
[2025-07-27 00:44:03] 2025-07-27 04:43:23,097 | INFO     | adding to output.list: log.45743349._043455.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/23/log.45743349._043455.job.log.tg
[2025-07-27 00:44:03] 2025-07-27 04:43:23,098 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 00:44:03] 2025-07-27 04:43:23,098 | INFO     | summary of transferred files:
[2025-07-27 00:44:03] 2025-07-27 04:43:23,098 | INFO     |  -- lfn=log.45743349._043455.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 00:44:03] 2025-07-27 04:43:23,098 | INFO     | stage-out finished correctly
[2025-07-27 00:44:03] 2025-07-27 04:43:23,594 | INFO     | monitor loop #381: job 0:6745388406 is in state 'finished'
[2025-07-27 00:44:03] 2025-07-27 04:43:23,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 00:44:03] 2025-07-27 04:43:25,085 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 00:44:03] 2025-07-27 04:43:25,914 | INFO     | job 6745388406 has state=finished
[2025-07-27 00:44:03] 2025-07-27 04:43:25,914 | INFO     | preparing for final server update for job 6745388406 in state='finished'
[2025-07-27 00:44:03] 2025-07-27 04:43:25,915 | INFO     | this job has now completed (state=finished)
[2025-07-27 00:44:03] 2025-07-27 04:43:25,915 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 00:44:03] 2025-07-27 04:43:25,915 | INFO     | log transfer has been attempted: DONE
[2025-07-27 00:44:03] 2025-07-27 04:43:25,915 | INFO     | job 6745388406 has finished - writing final server update
[2025-07-27 00:44:03] 2025-07-27 04:43:25,915 | INFO     | total number of processed events: 400 (read)
[2025-07-27 00:44:03] 2025-07-27 04:43:25,916 | INFO     | executing command: lscpu
[2025-07-27 00:44:03] 2025-07-27 04:43:25,973 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 00:44:03] 2025-07-27 04:43:26,098 | INFO     | monitor loop #382: job 0:6745388406 is in state 'finished'
[2025-07-27 00:44:03] 2025-07-27 04:43:26,098 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 00:44:03] 2025-07-27 04:43:28,602 | INFO     | monitor loop #383: job 0:6745388406 is in state 'finished'
[2025-07-27 00:44:03] 2025-07-27 04:43:28,602 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 00:44:03] 2025-07-27 04:43:30,271 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 00:44:03] 2025-07-27 04:43:30,279 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2749.4352142857147
[2025-07-27 00:44:03] 2025-07-27 04:43:30,288 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745388406/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 00:44:03] 2025-07-27 04:43:30,289 | INFO     | extracted standard info from prmon json
[2025-07-27 00:44:03] 2025-07-27 04:43:30,289 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 00:44:03] 2025-07-27 04:43:30,289 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 00:44:03] 2025-07-27 04:43:30,289 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 00:44:03] 2025-07-27 04:43:30,289 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 00:44:03] 2025-07-27 04:43:30,291 | INFO     | fitting pss+swap vs Time
[2025-07-27 00:44:03] 2025-07-27 04:43:30,291 | INFO     | sum of square deviations: 170928632.10975596
[2025-07-27 00:44:03] 2025-07-27 04:43:30,292 | INFO     | sum of deviations: -14669895497.207315
[2025-07-27 00:44:03] 2025-07-27 04:43:30,292 | INFO     | mean x: 1753588777.6707318
[2025-07-27 00:44:03] 2025-07-27 04:43:30,292 | INFO     | mean y: 2614452.6219512196
[2025-07-27 00:44:03] 2025-07-27 04:43:30,292 | INFO     | -- intersect: 150503813672.3451
[2025-07-27 00:44:03] 2025-07-27 04:43:30,292 | INFO     | intersect: 150503813672.3451
[2025-07-27 00:44:03] 2025-07-27 04:43:30,292 | INFO     | chi2: 0.3036070154960042
[2025-07-27 00:44:03] 2025-07-27 04:43:30,293 | INFO     | -- intersect: 150503813672.3451
[2025-07-27 00:44:03] 2025-07-27 04:43:30,293 | INFO     | current memory leak: -85.82 B/s (using 82 data points, chi2=0.30)
[2025-07-27 00:44:03] 2025-07-27 04:43:30,293 | INFO     | could have reported an average CPU frequency of 2658 MHz (6 samples)
[2025-07-27 00:44:03] 2025-07-27 04:43:30,293 | INFO     | ..............................
[2025-07-27 00:44:03] 2025-07-27 04:43:30,293 | INFO     | . Timing measurements:
[2025-07-27 00:44:03] 2025-07-27 04:43:30,293 | INFO     | . get job = 0 s
[2025-07-27 00:44:03] 2025-07-27 04:43:30,293 | INFO     | . initial setup = 3 s
[2025-07-27 00:44:03] 2025-07-27 04:43:30,293 | INFO     | . payload setup = 11 s
[2025-07-27 00:44:03] 2025-07-27 04:43:30,293 | INFO     | . stage-in = 0 s
[2025-07-27 00:44:03] 2025-07-27 04:43:30,294 | INFO     | . payload execution = 5403 s
[2025-07-27 00:44:03] 2025-07-27 04:43:30,294 | INFO     | . stage-out = 0 s
[2025-07-27 00:44:03] 2025-07-27 04:43:30,294 | INFO     | . log creation = 0 s
[2025-07-27 00:44:03] 2025-07-27 04:43:30,294 | INFO     | ..............................
[2025-07-27 00:44:03] 2025-07-27 04:43:30,379 | INFO     | 
[2025-07-27 00:44:03] 2025-07-27 04:43:30,379 | INFO     | job summary report
[2025-07-27 00:44:03] 2025-07-27 04:43:30,379 | INFO     | --------------------------------------------------
[2025-07-27 00:44:03] 2025-07-27 04:43:30,379 | INFO     | PanDA job id: 6745388406
[2025-07-27 00:44:03] 2025-07-27 04:43:30,379 | INFO     | task id: 45743349
[2025-07-27 00:44:03] 2025-07-27 04:43:30,379 | INFO     | errors: (none)
[2025-07-27 00:44:03] 2025-07-27 04:43:30,379 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 00:44:03] 2025-07-27 04:43:30,379 | INFO     | pilot state: finished 
[2025-07-27 00:44:03] 2025-07-27 04:43:30,380 | INFO     | transexitcode: 0
[2025-07-27 00:44:03] 2025-07-27 04:43:30,380 | INFO     | exeerrorcode: 0
[2025-07-27 00:44:03] 2025-07-27 04:43:30,380 | INFO     | exeerrordiag: 
[2025-07-27 00:44:03] 2025-07-27 04:43:30,380 | INFO     | exitcode: 0
[2025-07-27 00:44:03] 2025-07-27 04:43:30,380 | INFO     | exitmsg: OK
[2025-07-27 00:44:03] 2025-07-27 04:43:30,380 | INFO     | cpuconsumptiontime: 46744 s
[2025-07-27 00:44:03] 2025-07-27 04:43:30,380 | INFO     | nevents: 400
[2025-07-27 00:44:03] 2025-07-27 04:43:30,380 | INFO     | neventsw: 0
[2025-07-27 00:44:03] 2025-07-27 04:43:30,380 | INFO     | pid: 3639071
[2025-07-27 00:44:03] 2025-07-27 04:43:30,380 | INFO     | pgrp: 3639071
[2025-07-27 00:44:03] 2025-07-27 04:43:30,380 | INFO     | corecount: 12
[2025-07-27 00:44:03] 2025-07-27 04:43:30,380 | INFO     | event service: False
[2025-07-27 00:44:03] 2025-07-27 04:43:30,381 | INFO     | sizes: {0: 2397302, 1: 2397501, 7: 2397763, 11: 2397791, 5419: 2424327, 5420: 2433325, 5422: 2433509, 5427: 2433703}
[2025-07-27 00:44:03] 2025-07-27 04:43:30,381 | INFO     | --------------------------------------------------
[2025-07-27 00:44:03] 2025-07-27 04:43:30,381 | INFO     | 
[2025-07-27 00:44:03] 2025-07-27 04:43:30,381 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 00:44:03] 2025-07-27 04:43:30,406 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,406 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,406 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,406 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,406 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,406 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,406 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,406 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,406 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,406 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,406 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,406 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,406 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,407 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,407 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,407 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,407 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,407 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 00:44:03] 2025-07-27 04:43:30,407 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,407 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 00:44:03] 2025-07-27 04:43:30,407 | INFO     | job 6745388406 has completed (purged errors)
[2025-07-27 00:44:03] 2025-07-27 04:43:30,407 | INFO     | overall cleanup function is called
[2025-07-27 00:44:03] 2025-07-27 04:43:31,414 | INFO     | --- collectZombieJob: --- 10, [3639071]
[2025-07-27 00:44:03] 2025-07-27 04:43:31,414 | INFO     | zombie collector waiting for pid 3639071
[2025-07-27 00:44:03] 2025-07-27 04:43:31,415 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 00:44:03] 2025-07-27 04:43:31,415 | INFO     | collected zombie processes
[2025-07-27 00:44:03] 2025-07-27 04:43:31,415 | INFO     | will attempt to kill all subprocesses of pid=3639071
[2025-07-27 00:44:03] 2025-07-27 04:43:31,742 | INFO     | process IDs to be killed: [3639071] (in reverse order)
[2025-07-27 00:44:03] 2025-07-27 04:43:31,835 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 00:44:03] 2025-07-27 04:43:31,835 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 00:44:03] 2025-07-27 04:43:31,847 | INFO     | did not find any defunct processes belonging to 3639071
[2025-07-27 00:44:03] 2025-07-27 04:43:31,858 | INFO     | did not find any defunct processes belonging to 3639071
[2025-07-27 00:44:03] 2025-07-27 04:43:31,858 | INFO     | ready for new job
[2025-07-27 00:44:03] 2025-07-27 04:43:31,858 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 00:44:03] 2025-07-27 04:43:31,860 | INFO     | ***************************************
[2025-07-27 00:44:03] 2025-07-27 04:43:31,861 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 00:44:03] 2025-07-27 04:43:31,861 | INFO     | ***************************************
[2025-07-27 00:44:03] 2025-07-27 04:43:31,861 | INFO     | 
[2025-07-27 00:44:03] 2025-07-27 04:43:31,877 | INFO     | architecture information:
[2025-07-27 00:44:03] 2025-07-27 04:43:31,878 | INFO     | executing command: cat /etc/os-release
[2025-07-27 00:44:03] 2025-07-27 04:43:31,895 | INFO     | cat /etc/os-release:
[2025-07-27 00:44:03] NAME="CentOS Linux"
[2025-07-27 00:44:03] VERSION="7 (Core)"
[2025-07-27 00:44:03] ID="centos"
[2025-07-27 00:44:03] ID_LIKE="rhel fedora"
[2025-07-27 00:44:03] VERSION_ID="7"
[2025-07-27 00:44:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 00:44:03] ANSI_COLOR="0;31"
[2025-07-27 00:44:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 00:44:03] HOME_URL="https://www.centos.org/"
[2025-07-27 00:44:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 00:44:03] 
[2025-07-27 00:44:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 00:44:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 00:44:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 00:44:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 00:44:03] 
[2025-07-27 00:44:03] 2025-07-27 04:43:31,895 | INFO     | ***************************************
[2025-07-27 00:44:03] 2025-07-27 04:43:32,398 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 00:44:03] 2025-07-27 04:43:32,414 | INFO     | sufficient remaining disk space (71328333824 B)
[2025-07-27 00:44:03] 2025-07-27 04:43:32,414 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 00:44:03] 2025-07-27 04:43:32,414 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 00:44:03] 2025-07-27 04:43:32,415 | INFO     | update_server=False
[2025-07-27 00:44:03] 2025-07-27 04:43:32,415 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 00:44:03] 2025-07-27 04:43:32,415 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 00:44:03] 2025-07-27 04:43:32,415 | INFO     | aborting loop
[2025-07-27 00:44:03] 2025-07-27 04:43:32,732 | INFO     | all data control threads have been joined
[2025-07-27 00:44:03] 2025-07-27 04:43:32,840 | INFO     | all payload control threads have been joined
[2025-07-27 00:44:03] 2025-07-27 04:43:33,420 | INFO     | [job] job monitor thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:33,420 | INFO     | [job] retrieve thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:33,726 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 00:44:03] 2025-07-27 04:43:33,732 | INFO     | all job control threads have been joined
[2025-07-27 00:44:03] 2025-07-27 04:43:33,738 | INFO     | [data] control thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:33,765 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:33,845 | INFO     | [payload] control thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:34,003 | INFO     | [data] copytool_in thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:34,032 | INFO     | [job] validate thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:34,586 | INFO     | [payload] validate_post thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:34,735 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:34,737 | INFO     | [job] control thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:34,740 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:34,783 | INFO     | [payload] failed_post thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:35,389 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 00:44:03] 2025-07-27 04:43:35,712 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 00:44:03] 2025-07-27 04:43:35,731 | INFO     | [data] copytool_out thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:36,394 | INFO     | [job] queue monitor thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:39,718 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:43,035 | INFO     | job.realtimelogging is not enabled
[2025-07-27 00:44:03] 2025-07-27 04:43:44,040 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 00:44:03] 2025-07-27 04:43:46,041 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140332622800704)>', '<ExcThread(monitor, started 140332108850944)>']
[2025-07-27 00:44:03] 2025-07-27 04:43:51,066 | INFO     | all workflow threads have been joined
[2025-07-27 00:44:03] 2025-07-27 04:43:51,066 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 00:44:03] 2025-07-27 04:43:51,066 | INFO     | traces error code: 0
[2025-07-27 00:44:03] 2025-07-27 04:43:51,066 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 00:44:03] 2025-07-27 04:44:03,200 | INFO     | PID=3630888 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 00:44:03] 2025-07-27 04:44:03,200 | INFO     | .. there are 16 such processes running
[2025-07-27 00:44:03] 2025-07-27 04:44:03,200 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 00:44:03] 2025-07-27 04:44:03,200 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 00:44:03] 2025-07-27 04:44:03,201 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 00:44:03] 2025-07-27 04:44:03,201 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 00:44:03] 2025-07-27 04:44:03,201 | INFO     | [monitor] control thread has ended
[2025-07-27 00:44:03] 2025-07-27 04:44:03,345 [wrapper] ==== pilot stdout END ====
[2025-07-27 00:44:03] 2025-07-27 04:44:03,349 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 00:44:03] 2025-07-27 04:44:03,352 [wrapper] pilotpid: 3630888
[2025-07-27 00:44:03] 2025-07-27 04:44:03,355 [wrapper] Pilot exit status: 0
[2025-07-27 00:44:03] 2025-07-27 04:44:03,369 [wrapper] pandaids: 6745388406
[2025-07-27 00:44:03] 2025-07-27 04:44:03,446 [wrapper] cleanup supervisor_pilot 4069608 3630889
[2025-07-27 00:44:03] 2025-07-27 04:44:03,450 [wrapper] Test setup, not cleaning
[2025-07-27 00:44:03] 2025-07-27 04:44:03,453 [wrapper] apfmon messages muted
[2025-07-27 00:44:03] 2025-07-27 04:44:03,456 [wrapper] ==== wrapper stdout END ====
[2025-07-27 00:44:03] 2025-07-27 04:44:03,460 [wrapper] ==== wrapper stderr END ====
[2025-07-27 00:44:03]  *** Error codes and diagnostics ***
[2025-07-27 00:44:03]     "exeErrorCode": 0,
[2025-07-27 00:44:03]     "exeErrorDiag": "",
[2025-07-27 00:44:03]     "pilotErrorCode": 0,
[2025-07-27 00:44:03]     "pilotErrorDiag": "",
[2025-07-27 00:44:03]  *** Listing of results directory ***
[2025-07-27 00:44:03] total 350360
[2025-07-27 00:44:03] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 15:43 pilot3.tar.gz
[2025-07-27 00:44:03] -rwx------. 1 boincer umatlas     36292 Jul 26 15:58 runpilot2-wrapper.sh
[2025-07-27 00:44:03] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 15:58 queuedata.json
[2025-07-27 00:44:03] -rw-r--r--. 1 boincer umatlas       100 Jul 26 23:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 00:44:03] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 23:12 run_atlas
[2025-07-27 00:44:03] -rw-r--r--. 1 boincer umatlas       105 Jul 26 23:12 job.xml
[2025-07-27 00:44:03] -rw-r--r--. 2 boincer umatlas 145402432 Jul 26 23:12 EVNT.45743347._002482.pool.root.1
[2025-07-27 00:44:03] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 23:12 shared
[2025-07-27 00:44:03] -rw-r--r--. 2 boincer umatlas    542883 Jul 26 23:12 input.tar.gz
[2025-07-27 00:44:03] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 23:12 start_atlas.sh
[2025-07-27 00:44:03] -rw-r--r--. 1 boincer umatlas         0 Jul 26 23:12 boinc_lockfile
[2025-07-27 00:44:03] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 23:12 pandaJob.out
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas    980117 Jul 26 23:12 agis_schedconf.cvmfs.json
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas   1593052 Jul 26 23:12 agis_ddmendpoints.agis.ALL.json
[2025-07-27 00:44:03] drwx------. 4 boincer umatlas      4096 Jul 26 23:12 pilot3
[2025-07-27 00:44:03] -rw-r--r--. 1 boincer umatlas      6839 Jul 27 00:38 init_data.xml
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas 207730175 Jul 27 00:42 HITS.45743349._043455.pool.root.1
[2025-07-27 00:44:03] -rw-r--r--. 1 boincer umatlas       529 Jul 27 00:42 boinc_task_state.xml
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas      1035 Jul 27 00:43 memory_monitor_summary.json
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas        95 Jul 27 00:43 pilot_heartbeat.json
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas    360050 Jul 27 00:43 log.45743349._043455.job.log.tgz.1
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas      7821 Jul 27 00:43 heartbeat.json
[2025-07-27 00:44:03] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 00:43 boinc_mmap_file
[2025-07-27 00:44:03] -rw-r--r--. 1 boincer umatlas        27 Jul 27 00:43 wrapper_checkpoint.txt
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas       823 Jul 27 00:44 pilotlog.txt
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas    521492 Jul 27 00:44 log.45743349._043455.job.log.1
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas       357 Jul 27 00:44 output.list
[2025-07-27 00:44:03] -rw-r--r--. 1 boincer umatlas       620 Jul 27 00:44 runtime_log
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas    901120 Jul 27 00:44 result.tar.gz
[2025-07-27 00:44:03] -rw-r--r--. 1 boincer umatlas      8662 Jul 27 00:44 runtime_log.err
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas       653 Jul 27 00:44 LlFKDmUD0z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnySLDmhBNR6m.diag
[2025-07-27 00:44:03] -rw-r--r--. 1 boincer umatlas     21691 Jul 27 00:44 stderr.txt
[2025-07-27 00:44:03] HITS file was successfully produced:
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas 207730175 Jul 27 00:42 shared/HITS.pool.root.1
[2025-07-27 00:44:03]  *** Contents of shared directory: ***
[2025-07-27 00:44:03] total 346292
[2025-07-27 00:44:03] -rw-r--r--. 2 boincer umatlas 145402432 Jul 26 23:12 ATLAS.root_0
[2025-07-27 00:44:03] -rw-r--r--. 2 boincer umatlas    542883 Jul 26 23:12 input.tar.gz
[2025-07-27 00:44:03] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 23:12 start_atlas.sh
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas 207730175 Jul 27 00:42 HITS.pool.root.1
[2025-07-27 00:44:03] -rw-------. 1 boincer umatlas    901120 Jul 27 00:44 result.tar.gz
00:44:04 (3626484): run_atlas exited; CPU time 46823.322000
00:44:04 (3626484): called boinc_finish(0)

</stderr_txt>
]]>

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