Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
04:24:58 (3919029): wrapper (7.7.26015): starting
04:24:58 (3919029): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 04:24:58] Arguments: --nthreads 12
[2025-07-27 04:24:58] Threads: 12
[2025-07-27 04:24:58] Checking for CVMFS
[2025-07-27 04:24:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 04:24:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 04:24:58] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 04:24:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 04:24:59] 2.13.1.0 5295 2592 58628 148807 0 57 5208090 6144001 3668 130560 0 10916654 99.901 864897 1021 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-27 04:24:59] CVMFS is ok
[2025-07-27 04:24:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 04:24:59] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-27 04:24:59] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-27 04:24:59] Further information can be found at the LHC@home message board.
[2025-07-27 04:24:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 04:24:59] Checking for apptainer binary...
[2025-07-27 04:24:59] apptainer is not installed, using version from CVMFS
[2025-07-27 04:24:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 04:25:00] XeonFire
[2025-07-27 04:25:00] apptainer works
[2025-07-27 04:25:00] Set ATHENA_PROC_NUMBER=12
[2025-07-27 04:25:00] Set ATHENA_CORE_NUMBER=12
[2025-07-27 04:25:00] Starting ATLAS job with PandaID=6745388413
[2025-07-27 04:25:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 05:45:24]  *** The last 200 lines of the pilot log: ***
[2025-07-27 05:45:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 05:45:24]  replicas=None
[2025-07-27 05:45:24]  scope=mc23_13p6TeV
[2025-07-27 05:45:24]  status=None
[2025-07-27 05:45:24]  status_code=0
[2025-07-27 05:45:24]  storage_token=
[2025-07-27 05:45:24]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6745388413/log.45743349._043462.job.log.tgz.1
[2025-07-27 05:45:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/ee/log.45743349._043462.job.log.tgz.1
[2025-07-27 05:45:24]  workdir=None
[2025-07-27 05:45:24] ]
[2025-07-27 05:45:24] 2025-07-27 10:44:43,697 | INFO     | transferring file log.45743349._043462.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6745388413/log.45743349._043462.job.log.tgz.1 to /var/lib/boinc
[2025-07-27 05:45:24] 2025-07-27 10:44:43,698 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6745388413/log.45743349._043462.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.457433
[2025-07-27 05:45:24] 2025-07-27 10:44:43,713 | INFO     | adding to output.list: log.45743349._043462.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/ee/log.45743349._043462.job.log.tg
[2025-07-27 05:45:24] 2025-07-27 10:44:43,714 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 05:45:24] 2025-07-27 10:44:43,714 | INFO     | summary of transferred files:
[2025-07-27 05:45:24] 2025-07-27 10:44:43,714 | INFO     |  -- lfn=log.45743349._043462.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 05:45:24] 2025-07-27 10:44:43,714 | INFO     | stage-out finished correctly
[2025-07-27 05:45:24] 2025-07-27 10:44:44,513 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 05:45:24] 2025-07-27 10:44:46,579 | INFO     | job 6745388413 has state=finished
[2025-07-27 05:45:24] 2025-07-27 10:44:46,580 | INFO     | preparing for final server update for job 6745388413 in state='finished'
[2025-07-27 05:45:24] 2025-07-27 10:44:46,580 | INFO     | this job has now completed (state=finished)
[2025-07-27 05:45:24] 2025-07-27 10:44:46,580 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 05:45:24] 2025-07-27 10:44:46,581 | INFO     | log transfer has been attempted: DONE
[2025-07-27 05:45:24] 2025-07-27 10:44:46,581 | INFO     | job 6745388413 has finished - writing final server update
[2025-07-27 05:45:24] 2025-07-27 10:44:46,581 | INFO     | total number of processed events: 400 (read)
[2025-07-27 05:45:24] 2025-07-27 10:44:46,582 | INFO     | executing command: lscpu
[2025-07-27 05:45:24] 2025-07-27 10:44:46,643 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 05:45:24] 2025-07-27 10:44:47,959 | WARNING  | process 3929913 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 05:45:24] 2025-07-27 10:44:47,960 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6745388413/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 05:45:24] 2025-07-27 10:44:48,352 | INFO     | number of running child processes to parent process 3929913: 1
[2025-07-27 05:45:24] 2025-07-27 10:44:48,352 | INFO     | maximum number of monitored processes: 6
[2025-07-27 05:45:24] 2025-07-27 10:44:49,261 | INFO     | PID=3922958 has CPU usage=13.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-27 05:45:24] 2025-07-27 10:44:49,261 | INFO     | .. there are 5 such processes running
[2025-07-27 05:45:24] 2025-07-27 10:44:50,856 | INFO     | monitor loop #350: job 0:6745388413 is in state 'finished'
[2025-07-27 05:45:24] 2025-07-27 10:44:50,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 05:45:24] 2025-07-27 10:44:51,178 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 05:45:24] 2025-07-27 10:44:51,190 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2407.1603124999997
[2025-07-27 05:45:24] 2025-07-27 10:44:51,203 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6745388413/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 05:45:24] 2025-07-27 10:44:51,204 | INFO     | extracted standard info from prmon json
[2025-07-27 05:45:24] 2025-07-27 10:44:51,204 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 05:45:24] 2025-07-27 10:44:51,204 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 05:45:24] 2025-07-27 10:44:51,205 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 05:45:24] 2025-07-27 10:44:51,205 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 05:45:24] 2025-07-27 10:44:51,207 | INFO     | fitting pss+swap vs Time
[2025-07-27 05:45:24] 2025-07-27 10:44:51,208 | INFO     | sum of square deviations: 110960220.0
[2025-07-27 05:45:24] 2025-07-27 10:44:51,208 | INFO     | sum of deviations: -4331971181.000002
[2025-07-27 05:45:24] 2025-07-27 10:44:51,208 | INFO     | mean x: 1753610784.0
[2025-07-27 05:45:24] 2025-07-27 10:44:51,208 | INFO     | mean y: 2746783.3098591547
[2025-07-27 05:45:24] 2025-07-27 10:44:51,208 | INFO     | -- intersect: 68465042360.75932
[2025-07-27 05:45:24] 2025-07-27 10:44:51,208 | INFO     | intersect: 68465042360.75932
[2025-07-27 05:45:24] 2025-07-27 10:44:51,209 | INFO     | chi2: 0.010618448080851604
[2025-07-27 05:45:24] 2025-07-27 10:44:51,209 | INFO     | -- intersect: 68465042360.75932
[2025-07-27 05:45:24] 2025-07-27 10:44:51,209 | INFO     | current memory leak: -39.04 B/s (using 71 data points, chi2=0.01)
[2025-07-27 05:45:24] 2025-07-27 10:44:51,209 | INFO     | could have reported an average CPU frequency of 2393 MHz (6 samples)
[2025-07-27 05:45:24] 2025-07-27 10:44:51,210 | INFO     | ..............................
[2025-07-27 05:45:24] 2025-07-27 10:44:51,210 | INFO     | . Timing measurements:
[2025-07-27 05:45:24] 2025-07-27 10:44:51,210 | INFO     | . get job = 0 s
[2025-07-27 05:45:24] 2025-07-27 10:44:51,210 | INFO     | . initial setup = 3 s
[2025-07-27 05:45:24] 2025-07-27 10:44:51,210 | INFO     | . payload setup = 8 s
[2025-07-27 05:45:24] 2025-07-27 10:44:51,210 | INFO     | . stage-in = 0 s
[2025-07-27 05:45:24] 2025-07-27 10:44:51,210 | INFO     | . payload execution = 4740 s
[2025-07-27 05:45:24] 2025-07-27 10:44:51,210 | INFO     | . stage-out = 0 s
[2025-07-27 05:45:24] 2025-07-27 10:44:51,211 | INFO     | . log creation = 0 s
[2025-07-27 05:45:24] 2025-07-27 10:44:51,211 | INFO     | ..............................
[2025-07-27 05:45:24] 2025-07-27 10:44:51,641 | INFO     | 
[2025-07-27 05:45:24] 2025-07-27 10:44:51,641 | INFO     | job summary report
[2025-07-27 05:45:24] 2025-07-27 10:44:51,641 | INFO     | --------------------------------------------------
[2025-07-27 05:45:24] 2025-07-27 10:44:51,642 | INFO     | PanDA job id: 6745388413
[2025-07-27 05:45:24] 2025-07-27 10:44:51,642 | INFO     | task id: 45743349
[2025-07-27 05:45:24] 2025-07-27 10:44:51,642 | INFO     | errors: (none)
[2025-07-27 05:45:24] 2025-07-27 10:44:51,642 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 05:45:24] 2025-07-27 10:44:51,642 | INFO     | pilot state: finished 
[2025-07-27 05:45:24] 2025-07-27 10:44:51,642 | INFO     | transexitcode: 0
[2025-07-27 05:45:24] 2025-07-27 10:44:51,642 | INFO     | exeerrorcode: 0
[2025-07-27 05:45:24] 2025-07-27 10:44:51,642 | INFO     | exeerrordiag: 
[2025-07-27 05:45:24] 2025-07-27 10:44:51,643 | INFO     | exitcode: 0
[2025-07-27 05:45:24] 2025-07-27 10:44:51,643 | INFO     | exitmsg: OK
[2025-07-27 05:45:24] 2025-07-27 10:44:51,643 | INFO     | cpuconsumptiontime: 52059 s
[2025-07-27 05:45:24] 2025-07-27 10:44:51,643 | INFO     | nevents: 400
[2025-07-27 05:45:24] 2025-07-27 10:44:51,643 | INFO     | neventsw: 0
[2025-07-27 05:45:24] 2025-07-27 10:44:51,643 | INFO     | pid: 3929913
[2025-07-27 05:45:24] 2025-07-27 10:44:51,643 | INFO     | pgrp: 3929913
[2025-07-27 05:45:24] 2025-07-27 10:44:51,643 | INFO     | corecount: 12
[2025-07-27 05:45:24] 2025-07-27 10:44:51,643 | INFO     | event service: False
[2025-07-27 05:45:24] 2025-07-27 10:44:51,644 | INFO     | sizes: {0: 2397481, 5: 2397743, 11: 2397799, 4753: 2423944, 4754: 2432956, 4755: 2433012, 4761: 2433334}
[2025-07-27 05:45:24] 2025-07-27 10:44:51,644 | INFO     | --------------------------------------------------
[2025-07-27 05:45:24] 2025-07-27 10:44:51,644 | INFO     | 
[2025-07-27 05:45:24] 2025-07-27 10:44:51,644 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-07-27 05:45:24] 2025-07-27 10:44:51,668 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,669 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,669 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,669 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,669 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,669 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,669 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,670 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,670 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,670 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,670 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,670 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,670 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,670 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,671 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,671 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,671 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,671 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 05:45:24] 2025-07-27 10:44:51,671 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,671 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 05:45:24] 2025-07-27 10:44:51,671 | INFO     | job 6745388413 has completed (purged errors)
[2025-07-27 05:45:24] 2025-07-27 10:44:51,672 | INFO     | overall cleanup function is called
[2025-07-27 05:45:24] 2025-07-27 10:44:52,681 | INFO     | --- collectZombieJob: --- 10, [3929913]
[2025-07-27 05:45:24] 2025-07-27 10:44:52,681 | INFO     | zombie collector waiting for pid 3929913
[2025-07-27 05:45:24] 2025-07-27 10:44:52,682 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 05:45:24] 2025-07-27 10:44:52,682 | INFO     | collected zombie processes
[2025-07-27 05:45:24] 2025-07-27 10:44:52,682 | INFO     | will attempt to kill all subprocesses of pid=3929913
[2025-07-27 05:45:24] 2025-07-27 10:44:53,070 | INFO     | process IDs to be killed: [3929913] (in reverse order)
[2025-07-27 05:45:24] 2025-07-27 10:44:53,190 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 05:45:24] 2025-07-27 10:44:53,191 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 05:45:24] 2025-07-27 10:44:53,199 | INFO     | did not find any defunct processes belonging to 3929913
[2025-07-27 05:45:24] 2025-07-27 10:44:53,207 | INFO     | did not find any defunct processes belonging to 3929913
[2025-07-27 05:45:24] 2025-07-27 10:44:53,207 | INFO     | ready for new job
[2025-07-27 05:45:24] 2025-07-27 10:44:53,207 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 05:45:24] 2025-07-27 10:44:53,209 | INFO     | ***************************************
[2025-07-27 05:45:24] 2025-07-27 10:44:53,209 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 05:45:24] 2025-07-27 10:44:53,209 | INFO     | ***************************************
[2025-07-27 05:45:24] 2025-07-27 10:44:53,209 | INFO     | 
[2025-07-27 05:45:24] 2025-07-27 10:44:53,213 | INFO     | architecture information:
[2025-07-27 05:45:24] 2025-07-27 10:44:53,214 | INFO     | executing command: cat /etc/os-release
[2025-07-27 05:45:24] 2025-07-27 10:44:53,231 | INFO     | cat /etc/os-release:
[2025-07-27 05:45:24] NAME="CentOS Linux"
[2025-07-27 05:45:24] VERSION="7 (Core)"
[2025-07-27 05:45:24] ID="centos"
[2025-07-27 05:45:24] ID_LIKE="rhel fedora"
[2025-07-27 05:45:24] VERSION_ID="7"
[2025-07-27 05:45:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 05:45:24] ANSI_COLOR="0;31"
[2025-07-27 05:45:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 05:45:24] HOME_URL="https://www.centos.org/"
[2025-07-27 05:45:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 05:45:24] 
[2025-07-27 05:45:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 05:45:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 05:45:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 05:45:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 05:45:24] 
[2025-07-27 05:45:24] 2025-07-27 10:44:53,231 | INFO     | ***************************************
[2025-07-27 05:45:24] 2025-07-27 10:44:53,734 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-07-27 05:45:24] 2025-07-27 10:44:53,751 | INFO     | sufficient remaining disk space (1819565621248 B)
[2025-07-27 05:45:24] 2025-07-27 10:44:53,752 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 05:45:24] 2025-07-27 10:44:53,752 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 05:45:24] 2025-07-27 10:44:53,752 | INFO     | update_server=False
[2025-07-27 05:45:24] 2025-07-27 10:44:53,752 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 05:45:24] 2025-07-27 10:44:54,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 05:45:24] 2025-07-27 10:44:54,364 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:45:24] 2025-07-27 10:44:54,365 | INFO     | aborting loop
[2025-07-27 05:45:24] 2025-07-27 10:44:54,373 | INFO     | all payload control threads have been joined
[2025-07-27 05:45:24] 2025-07-27 10:44:54,577 | INFO     | all data control threads have been joined
[2025-07-27 05:45:24] 2025-07-27 10:44:54,758 | INFO     | [job] retrieve thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:44:54,783 | INFO     | all job control threads have been joined
[2025-07-27 05:45:24] 2025-07-27 10:44:54,913 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:44:55,133 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 05:45:24] 2025-07-27 10:44:55,212 | INFO     | [data] copytool_in thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:44:55,307 | INFO     | [payload] validate_post thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:44:55,367 | INFO     | [job] job monitor thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:44:55,379 | INFO     | [payload] control thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:44:55,582 | INFO     | [data] control thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:44:55,718 | INFO     | [job] validate thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:44:55,785 | INFO     | [job] control thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:44:55,967 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:44:56,206 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:44:56,247 | INFO     | [payload] failed_post thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:44:56,293 | INFO     | [data] copytool_out thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:44:56,336 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 05:45:24] 2025-07-27 10:44:57,342 | INFO     | [job] queue monitor thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:44:59,139 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:45:03,909 | INFO     | job.realtimelogging is not enabled
[2025-07-27 05:45:24] 2025-07-27 10:45:04,914 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 05:45:24] 2025-07-27 10:45:06,600 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128659495429952)>', '<ExcThread(monitor, started 128658832357120)>']
[2025-07-27 05:45:24] 2025-07-27 10:45:11,604 | INFO     | all workflow threads have been joined
[2025-07-27 05:45:24] 2025-07-27 10:45:11,604 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 05:45:24] 2025-07-27 10:45:11,604 | INFO     | traces error code: 0
[2025-07-27 05:45:24] 2025-07-27 10:45:11,605 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 05:45:24] 2025-07-27 10:45:23,795 | INFO     | PID=3922958 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 05:45:24] 2025-07-27 10:45:23,795 | INFO     | .. there are 5 such processes running
[2025-07-27 05:45:24] 2025-07-27 10:45:23,796 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 05:45:24] 2025-07-27 10:45:23,796 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 05:45:24] 2025-07-27 10:45:23,797 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 05:45:24] 2025-07-27 10:45:23,797 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 05:45:24] 2025-07-27 10:45:23,797 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 05:45:24] 2025-07-27 10:45:23,797 | INFO     | [monitor] control thread has ended
[2025-07-27 05:45:24] 2025-07-27 10:45:23,927 [wrapper] ==== pilot stdout END ====
[2025-07-27 05:45:24] 2025-07-27 10:45:23,930 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 05:45:24] 2025-07-27 10:45:23,933 [wrapper] pilotpid: 3922958
[2025-07-27 05:45:24] 2025-07-27 10:45:23,936 [wrapper] Pilot exit status: 0
[2025-07-27 05:45:24] 2025-07-27 10:45:23,947 [wrapper] pandaids: 6745388413
[2025-07-27 05:45:24] 2025-07-27 10:45:24,012 [wrapper] cleanup supervisor_pilot 4045188 3922959
[2025-07-27 05:45:24] 2025-07-27 10:45:24,015 [wrapper] Test setup, not cleaning
[2025-07-27 05:45:24] 2025-07-27 10:45:24,018 [wrapper] apfmon messages muted
[2025-07-27 05:45:24] 2025-07-27 10:45:24,021 [wrapper] ==== wrapper stdout END ====
[2025-07-27 05:45:24] 2025-07-27 10:45:24,024 [wrapper] ==== wrapper stderr END ====
[2025-07-27 05:45:24]  *** Error codes and diagnostics ***
[2025-07-27 05:45:24]     "exeErrorCode": 0,
[2025-07-27 05:45:24]     "exeErrorDiag": "",
[2025-07-27 05:45:24]     "pilotErrorCode": 0,
[2025-07-27 05:45:24]     "pilotErrorDiag": "",
[2025-07-27 05:45:24]  *** Listing of results directory ***
[2025-07-27 05:45:24] total 347096
[2025-07-27 05:45:24] -rw-r--r-- 1 mark mark    530466 Jul 26 14:43 pilot3.tar.gz
[2025-07-27 05:45:24] -rwx------ 1 mark mark     36292 Jul 26 14:57 runpilot2-wrapper.sh
[2025-07-27 05:45:24] -rw-r--r-- 1 mark mark      5112 Jul 26 14:57 queuedata.json
[2025-07-27 05:45:24] -rw-rw-r-- 1 mark mark       100 Jul 27 04:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 05:45:24] -rwxr-xr-x 1 mark mark      7986 Jul 27 04:24 run_atlas
[2025-07-27 05:45:24] -rw-rw-r-- 1 mark mark       105 Jul 27 04:24 job.xml
[2025-07-27 05:45:24] -rw-r--r-- 2 mark mark 145402432 Jul 27 04:24 EVNT.45743347._002482.pool.root.1
[2025-07-27 05:45:24] -rw-r--r-- 2 mark mark     15095 Jul 27 04:24 start_atlas.sh
[2025-07-27 05:45:24] drwxrwx--x 2 mark mark      4096 Jul 27 04:24 shared
[2025-07-27 05:45:24] -rw-r--r-- 2 mark mark    542889 Jul 27 04:24 input.tar.gz
[2025-07-27 05:45:24] -rw-rw-r-- 1 mark mark         0 Jul 27 04:24 boinc_setup_complete
[2025-07-27 05:45:24] -rw-rw-r-- 1 mark mark      9229 Jul 27 04:24 init_data.xml
[2025-07-27 05:45:24] -rw-rw-r-- 1 mark mark         0 Jul 27 04:24 boinc_lockfile
[2025-07-27 05:45:24] -rw-rw-r-- 1 mark mark      2562 Jul 27 04:25 pandaJob.out
[2025-07-27 05:45:24] -rw------- 1 mark mark    980125 Jul 27 04:25 agis_schedconf.cvmfs.json
[2025-07-27 05:45:24] -rw------- 1 mark mark   1593052 Jul 27 04:25 agis_ddmendpoints.agis.ALL.json
[2025-07-27 05:45:24] drwx------ 4 mark mark      4096 Jul 27 04:25 pilot3
[2025-07-27 05:45:24] -rw------- 1 mark mark 204478490 Jul 27 05:44 HITS.45743349._043462.pool.root.1
[2025-07-27 05:45:24] -rw-rw-r-- 1 mark mark       529 Jul 27 05:44 boinc_task_state.xml
[2025-07-27 05:45:24] -rw------- 1 mark mark      1032 Jul 27 05:44 memory_monitor_summary.json
[2025-07-27 05:45:24] -rw------- 1 mark mark    364175 Jul 27 05:44 log.45743349._043462.job.log.tgz.1
[2025-07-27 05:45:24] -rw------- 1 mark mark      7786 Jul 27 05:44 heartbeat.json
[2025-07-27 05:45:24] -rw-rw-r-- 1 mark mark      8192 Jul 27 05:45 boinc_mmap_file
[2025-07-27 05:45:24] -rw-rw-r-- 1 mark mark        27 Jul 27 05:45 wrapper_checkpoint.txt
[2025-07-27 05:45:24] -rw------- 1 mark mark        95 Jul 27 05:45 pilot_heartbeat.json
[2025-07-27 05:45:24] -rw------- 1 mark mark       892 Jul 27 05:45 pilotlog.txt
[2025-07-27 05:45:24] -rw------- 1 mark mark    470803 Jul 27 05:45 log.45743349._043462.job.log.1
[2025-07-27 05:45:24] -rw------- 1 mark mark       357 Jul 27 05:45 output.list
[2025-07-27 05:45:24] -rw-rw-r-- 1 mark mark       620 Jul 27 05:45 runtime_log
[2025-07-27 05:45:24] -rw------- 1 mark mark    849920 Jul 27 05:45 result.tar.gz
[2025-07-27 05:45:24] -rw------- 1 mark mark       645 Jul 27 05:45 uFxLDmaC0z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjySLDme8hman.diag
[2025-07-27 05:45:24] -rw-rw-r-- 1 mark mark      8716 Jul 27 05:45 runtime_log.err
[2025-07-27 05:45:24] -rw-rw-r-- 1 mark mark     22063 Jul 27 05:45 stderr.txt
[2025-07-27 05:45:24] HITS file was successfully produced:
[2025-07-27 05:45:24] -rw------- 1 mark mark 204478490 Jul 27 05:44 shared/HITS.pool.root.1
[2025-07-27 05:45:24]  *** Contents of shared directory: ***
[2025-07-27 05:45:24] total 343072
[2025-07-27 05:45:24] -rw-r--r-- 2 mark mark 145402432 Jul 27 04:24 ATLAS.root_0
[2025-07-27 05:45:24] -rw-r--r-- 2 mark mark     15095 Jul 27 04:24 start_atlas.sh
[2025-07-27 05:45:24] -rw-r--r-- 2 mark mark    542889 Jul 27 04:24 input.tar.gz
[2025-07-27 05:45:24] -rw------- 1 mark mark 204478490 Jul 27 05:44 HITS.pool.root.1
[2025-07-27 05:45:24] -rw------- 1 mark mark    849920 Jul 27 05:45 result.tar.gz
05:45:25 (3919029): run_atlas exited; CPU time 52249.359990
05:45:25 (3919029): called boinc_finish(0)

</stderr_txt>
]]>

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