Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:53:03 (15068): wrapper (7.7.26015): starting
21:53:03 (15068): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 21:53:03] Arguments: --nthreads 12
[2025-07-26 21:53:03] Threads: 12
[2025-07-26 21:53:03] Checking for CVMFS
[2025-07-26 21:53:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 21:53:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 21:53:03] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 21:53:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 21:53:03] 2.13.1.0 5053 10117 182784 148795 0 65 29834873 40960000 5484 16776704 0 11348934 99.870 14296289 48708 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 21:53:03] CVMFS is ok
[2025-07-26 21:53:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 21:53:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 21:53:03] Further information can be found at the LHC@home message board.
[2025-07-26 21:53:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 21:53:03] Checking for apptainer binary...
[2025-07-26 21:53:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 21:53:03] Running /usr/bin/apptainer --version
[2025-07-26 21:53:03] apptainer version 1.4.1-1.el9
[2025-07-26 21:53:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 21:53:04] c-210-33-1.aglt2.org
[2025-07-26 21:53:04] apptainer works
[2025-07-26 21:53:04] Set ATHENA_PROC_NUMBER=12
[2025-07-26 21:53:04] Set ATHENA_CORE_NUMBER=12
[2025-07-26 21:53:04] Starting ATLAS job with PandaID=6745835369
[2025-07-26 21:53:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 23:02:43]  *** The last 200 lines of the pilot log: ***
[2025-07-26 23:02:43]  lfn=log.45743349._045475.job.log.tgz.1
[2025-07-26 23:02:43]  mtime=0
[2025-07-26 23:02:43]  protocol_id=None
[2025-07-26 23:02:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 23:02:43]  replicas=None
[2025-07-26 23:02:43]  scope=mc23_13p6TeV
[2025-07-26 23:02:43]  status=None
[2025-07-26 23:02:43]  status_code=0
[2025-07-26 23:02:43]  storage_token=
[2025-07-26 23:02:43]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745835369/log.45743349._045475.job.log.tgz.1
[2025-07-26 23:02:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/99/98/log.45743349._045475.job.log.tgz.1
[2025-07-26 23:02:43]  workdir=None
[2025-07-26 23:02:43] ]
[2025-07-26 23:02:43] 2025-07-27 03:02:05,232 | INFO     | transferring file log.45743349._045475.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745835369/log.45743349._045475.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 23:02:43] 2025-07-27 03:02:05,232 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745835369/log.45743349._045475.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._045475.job
[2025-07-26 23:02:43] 2025-07-27 03:02:05,248 | INFO     | adding to output.list: log.45743349._045475.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/99/98/log.45743349._045475.job.log.tg
[2025-07-26 23:02:43] 2025-07-27 03:02:05,249 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 23:02:43] 2025-07-27 03:02:05,249 | INFO     | summary of transferred files:
[2025-07-26 23:02:43] 2025-07-27 03:02:05,249 | INFO     |  -- lfn=log.45743349._045475.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 23:02:43] 2025-07-27 03:02:05,249 | INFO     | stage-out finished correctly
[2025-07-26 23:02:43] 2025-07-27 03:02:06,967 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 23:02:43] 2025-07-27 03:02:07,196 | INFO     | PID=18672 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 23:02:43] 2025-07-27 03:02:07,197 | INFO     | .. there are 8 such processes running
[2025-07-26 23:02:43] 2025-07-27 03:02:07,547 | INFO     | monitor loop #312: job 0:6745835369 is in state 'finished'
[2025-07-26 23:02:43] 2025-07-27 03:02:07,547 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 23:02:43] 2025-07-27 03:02:07,877 | INFO     | job 6745835369 has state=finished
[2025-07-26 23:02:43] 2025-07-27 03:02:07,877 | INFO     | preparing for final server update for job 6745835369 in state='finished'
[2025-07-26 23:02:43] 2025-07-27 03:02:07,877 | INFO     | this job has now completed (state=finished)
[2025-07-26 23:02:43] 2025-07-27 03:02:07,878 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 23:02:43] 2025-07-27 03:02:07,878 | INFO     | log transfer has been attempted: DONE
[2025-07-26 23:02:43] 2025-07-27 03:02:07,878 | INFO     | job 6745835369 has finished - writing final server update
[2025-07-26 23:02:43] 2025-07-27 03:02:07,878 | INFO     | total number of processed events: 400 (read)
[2025-07-26 23:02:43] 2025-07-27 03:02:07,879 | INFO     | executing command: lscpu
[2025-07-26 23:02:43] 2025-07-27 03:02:07,936 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 23:02:43] 2025-07-27 03:02:10,050 | INFO     | monitor loop #313: job 0:6745835369 is in state 'finished'
[2025-07-26 23:02:43] 2025-07-27 03:02:10,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 23:02:43] 2025-07-27 03:02:12,066 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 23:02:43] 2025-07-27 03:02:12,073 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2681.6073928571427
[2025-07-26 23:02:43] 2025-07-27 03:02:12,081 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745835369/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:02:43] 2025-07-27 03:02:12,082 | INFO     | extracted standard info from prmon json
[2025-07-26 23:02:43] 2025-07-27 03:02:12,082 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 23:02:43] 2025-07-27 03:02:12,082 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 23:02:43] 2025-07-27 03:02:12,082 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 23:02:43] 2025-07-27 03:02:12,082 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 23:02:43] 2025-07-27 03:02:12,084 | INFO     | fitting pss+swap vs Time
[2025-07-26 23:02:43] 2025-07-27 03:02:12,084 | INFO     | sum of square deviations: 70364110.0
[2025-07-26 23:02:43] 2025-07-27 03:02:12,084 | INFO     | sum of deviations: -4566638729.999999
[2025-07-26 23:02:43] 2025-07-27 03:02:12,084 | INFO     | mean x: 1753583357.0
[2025-07-26 23:02:43] 2025-07-27 03:02:12,084 | INFO     | mean y: 2808880.098360656
[2025-07-26 23:02:43] 2025-07-27 03:02:12,084 | INFO     | -- intersect: 113810567897.58064
[2025-07-26 23:02:43] 2025-07-27 03:02:12,084 | INFO     | intersect: 113810567897.58064
[2025-07-26 23:02:43] 2025-07-27 03:02:12,085 | INFO     | chi2: 0.10330437584360763
[2025-07-26 23:02:43] 2025-07-27 03:02:12,085 | INFO     | -- intersect: 113810567897.58064
[2025-07-26 23:02:43] 2025-07-27 03:02:12,085 | INFO     | current memory leak: -64.90 B/s (using 61 data points, chi2=0.10)
[2025-07-26 23:02:43] 2025-07-27 03:02:12,085 | INFO     | could have reported an average CPU frequency of 2711 MHz (6 samples)
[2025-07-26 23:02:43] 2025-07-27 03:02:12,085 | INFO     | ..............................
[2025-07-26 23:02:43] 2025-07-27 03:02:12,085 | INFO     | . Timing measurements:
[2025-07-26 23:02:43] 2025-07-27 03:02:12,086 | INFO     | . get job = 0 s
[2025-07-26 23:02:43] 2025-07-27 03:02:12,086 | INFO     | . initial setup = 2 s
[2025-07-26 23:02:43] 2025-07-27 03:02:12,086 | INFO     | . payload setup = 7 s
[2025-07-26 23:02:43] 2025-07-27 03:02:12,086 | INFO     | . stage-in = 0 s
[2025-07-26 23:02:43] 2025-07-27 03:02:12,086 | INFO     | . payload execution = 4103 s
[2025-07-26 23:02:43] 2025-07-27 03:02:12,086 | INFO     | . stage-out = 0 s
[2025-07-26 23:02:43] 2025-07-27 03:02:12,086 | INFO     | . log creation = 0 s
[2025-07-26 23:02:43] 2025-07-27 03:02:12,086 | INFO     | ..............................
[2025-07-26 23:02:43] 2025-07-27 03:02:12,163 | INFO     | 
[2025-07-26 23:02:43] 2025-07-27 03:02:12,163 | INFO     | job summary report
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | --------------------------------------------------
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | PanDA job id: 6745835369
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | task id: 45743349
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | errors: (none)
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | pilot state: finished 
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | transexitcode: 0
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | exeerrorcode: 0
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | exeerrordiag: 
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | exitcode: 0
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | exitmsg: OK
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | cpuconsumptiontime: 43925 s
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | nevents: 400
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | neventsw: 0
[2025-07-26 23:02:43] 2025-07-27 03:02:12,164 | INFO     | pid: 27475
[2025-07-26 23:02:43] 2025-07-27 03:02:12,165 | INFO     | pgrp: 27475
[2025-07-26 23:02:43] 2025-07-27 03:02:12,165 | INFO     | corecount: 12
[2025-07-26 23:02:43] 2025-07-27 03:02:12,165 | INFO     | event service: False
[2025-07-26 23:02:43] 2025-07-27 03:02:12,165 | INFO     | sizes: {0: 2397474, 5: 2397736, 11: 2397792, 4114: 2423626, 4115: 2432624, 4117: 2432680, 4122: 2433002}
[2025-07-26 23:02:43] 2025-07-27 03:02:12,165 | INFO     | --------------------------------------------------
[2025-07-26 23:02:43] 2025-07-27 03:02:12,165 | INFO     | 
[2025-07-26 23:02:43] 2025-07-27 03:02:12,165 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 23:02:43] 2025-07-27 03:02:12,182 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,183 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,183 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,183 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,183 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,183 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,183 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,183 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,183 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,183 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,183 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,183 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,183 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,183 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,183 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,184 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,184 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,184 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 23:02:43] 2025-07-27 03:02:12,184 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,184 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 23:02:43] 2025-07-27 03:02:12,184 | INFO     | job 6745835369 has completed (purged errors)
[2025-07-26 23:02:43] 2025-07-27 03:02:12,184 | INFO     | overall cleanup function is called
[2025-07-26 23:02:43] 2025-07-27 03:02:13,191 | INFO     | --- collectZombieJob: --- 10, [27475]
[2025-07-26 23:02:43] 2025-07-27 03:02:13,192 | INFO     | zombie collector waiting for pid 27475
[2025-07-26 23:02:43] 2025-07-27 03:02:13,192 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 23:02:43] 2025-07-27 03:02:13,192 | INFO     | collected zombie processes
[2025-07-26 23:02:43] 2025-07-27 03:02:13,192 | INFO     | will attempt to kill all subprocesses of pid=27475
[2025-07-26 23:02:43] 2025-07-27 03:02:13,384 | INFO     | process IDs to be killed: [27475] (in reverse order)
[2025-07-26 23:02:43] 2025-07-27 03:02:13,479 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 23:02:43] 2025-07-27 03:02:13,479 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 23:02:43] 2025-07-27 03:02:13,487 | INFO     | did not find any defunct processes belonging to 27475
[2025-07-26 23:02:43] 2025-07-27 03:02:13,495 | INFO     | did not find any defunct processes belonging to 27475
[2025-07-26 23:02:43] 2025-07-27 03:02:13,495 | INFO     | ready for new job
[2025-07-26 23:02:43] 2025-07-27 03:02:13,495 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 23:02:43] 2025-07-27 03:02:13,496 | INFO     | ***************************************
[2025-07-26 23:02:43] 2025-07-27 03:02:13,496 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 23:02:43] 2025-07-27 03:02:13,497 | INFO     | ***************************************
[2025-07-26 23:02:43] 2025-07-27 03:02:13,497 | INFO     | 
[2025-07-26 23:02:43] 2025-07-27 03:02:13,499 | INFO     | architecture information:
[2025-07-26 23:02:43] 2025-07-27 03:02:13,499 | INFO     | executing command: cat /etc/os-release
[2025-07-26 23:02:43] 2025-07-27 03:02:13,513 | INFO     | cat /etc/os-release:
[2025-07-26 23:02:43] NAME="CentOS Linux"
[2025-07-26 23:02:43] VERSION="7 (Core)"
[2025-07-26 23:02:43] ID="centos"
[2025-07-26 23:02:43] ID_LIKE="rhel fedora"
[2025-07-26 23:02:43] VERSION_ID="7"
[2025-07-26 23:02:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 23:02:43] ANSI_COLOR="0;31"
[2025-07-26 23:02:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 23:02:43] HOME_URL="https://www.centos.org/"
[2025-07-26 23:02:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 23:02:43] 
[2025-07-26 23:02:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 23:02:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 23:02:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 23:02:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 23:02:43] 
[2025-07-26 23:02:43] 2025-07-27 03:02:13,514 | INFO     | ***************************************
[2025-07-26 23:02:43] 2025-07-27 03:02:14,017 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 23:02:43] 2025-07-27 03:02:14,031 | INFO     | sufficient remaining disk space (75526832128 B)
[2025-07-26 23:02:43] 2025-07-27 03:02:14,031 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 23:02:43] 2025-07-27 03:02:14,031 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 23:02:43] 2025-07-27 03:02:14,031 | INFO     | update_server=False
[2025-07-26 23:02:43] 2025-07-27 03:02:14,032 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 23:02:43] 2025-07-27 03:02:14,032 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 23:02:43] 2025-07-27 03:02:14,032 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:02:43] 2025-07-27 03:02:14,032 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:02:43] 2025-07-27 03:02:14,032 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 23:02:43] 2025-07-27 03:02:14,033 | INFO     | aborting loop
[2025-07-26 23:02:43] 2025-07-27 03:02:14,739 | INFO     | all data control threads have been joined
[2025-07-26 23:02:43] 2025-07-27 03:02:14,874 | INFO     | all payload control threads have been joined
[2025-07-26 23:02:43] 2025-07-27 03:02:15,037 | INFO     | [job] retrieve thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:15,037 | INFO     | [job] job monitor thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:15,038 | INFO     | [job] queue monitor thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:15,125 | INFO     | all job control threads have been joined
[2025-07-26 23:02:43] 2025-07-27 03:02:15,190 | INFO     | [payload] validate_post thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:15,610 | INFO     | [payload] failed_post thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:15,745 | INFO     | [data] control thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:15,881 | INFO     | [payload] control thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:16,027 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:16,038 | INFO     | [data] copytool_out thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:16,092 | INFO     | [job] validate thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:16,131 | INFO     | [job] control thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:16,262 | INFO     | [data] copytool_in thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:16,264 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:16,530 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:18,038 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:24,832 | INFO     | job.realtimelogging is not enabled
[2025-07-26 23:02:43] 2025-07-27 03:02:25,838 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 23:02:43] 2025-07-27 03:02:27,241 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139632551982912)>', '<ExcThread(monitor, started 139631903356672)>']
[2025-07-26 23:02:43] 2025-07-27 03:02:32,265 | INFO     | all workflow threads have been joined
[2025-07-26 23:02:43] 2025-07-27 03:02:32,266 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 23:02:43] 2025-07-27 03:02:32,266 | INFO     | traces error code: 0
[2025-07-26 23:02:43] 2025-07-27 03:02:32,266 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 23:02:43] 2025-07-27 03:02:43,505 | INFO     | PID=18672 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 23:02:43] 2025-07-27 03:02:43,506 | INFO     | .. there are 8 such processes running
[2025-07-26 23:02:43] 2025-07-27 03:02:43,506 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 23:02:43] 2025-07-27 03:02:43,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 23:02:43] 2025-07-27 03:02:43,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 23:02:43] 2025-07-27 03:02:43,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 23:02:43] 2025-07-27 03:02:43,507 | INFO     | [monitor] control thread has ended
[2025-07-26 23:02:43] 2025-07-27 03:02:43,616 [wrapper] ==== pilot stdout END ====
[2025-07-26 23:02:43] 2025-07-27 03:02:43,618 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 23:02:43] 2025-07-27 03:02:43,620 [wrapper] pilotpid: 18672
[2025-07-26 23:02:43] 2025-07-27 03:02:43,623 [wrapper] Pilot exit status: 0
[2025-07-26 23:02:43] 2025-07-27 03:02:43,632 [wrapper] pandaids: 6745835369
[2025-07-26 23:02:43] 2025-07-27 03:02:43,676 [wrapper] cleanup supervisor_pilot   75581 18673
[2025-07-26 23:02:43] 2025-07-27 03:02:43,680 [wrapper] Test setup, not cleaning
[2025-07-26 23:02:43] 2025-07-27 03:02:43,683 [wrapper] apfmon messages muted
[2025-07-26 23:02:43] 2025-07-27 03:02:43,685 [wrapper] ==== wrapper stdout END ====
[2025-07-26 23:02:43] 2025-07-27 03:02:43,687 [wrapper] ==== wrapper stderr END ====
[2025-07-26 23:02:43]  *** Error codes and diagnostics ***
[2025-07-26 23:02:43]     "exeErrorCode": 0,
[2025-07-26 23:02:43]     "exeErrorDiag": "",
[2025-07-26 23:02:43]     "pilotErrorCode": 0,
[2025-07-26 23:02:43]     "pilotErrorDiag": "",
[2025-07-26 23:02:43]  *** Listing of results directory ***
[2025-07-26 23:02:43] total 353636
[2025-07-26 23:02:43] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 18:18 pilot3.tar.gz
[2025-07-26 23:02:43] -rwx------. 1 boincer umatlas     36292 Jul 26 18:30 runpilot2-wrapper.sh
[2025-07-26 23:02:43] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 18:30 queuedata.json
[2025-07-26 23:02:43] -rw-r--r--. 1 boincer umatlas       100 Jul 26 21:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 23:02:43] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 21:53 run_atlas
[2025-07-26 23:02:43] -rw-r--r--. 1 boincer umatlas       105 Jul 26 21:53 job.xml
[2025-07-26 23:02:43] -rw-r--r--. 2 boincer umatlas 145699419 Jul 26 21:53 EVNT.45743347._002539.pool.root.1
[2025-07-26 23:02:43] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 21:53 start_atlas.sh
[2025-07-26 23:02:43] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 21:53 shared
[2025-07-26 23:02:43] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 21:53 input.tar.gz
[2025-07-26 23:02:43] -rw-r--r--. 1 boincer umatlas         0 Jul 26 21:53 boinc_lockfile
[2025-07-26 23:02:43] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 21:53 pandaJob.out
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas    980125 Jul 26 21:53 agis_schedconf.cvmfs.json
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas   1593052 Jul 26 21:53 agis_ddmendpoints.agis.ALL.json
[2025-07-26 23:02:43] drwx------. 4 boincer umatlas      4096 Jul 26 21:53 pilot3
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas 210986727 Jul 26 23:01 HITS.45743349._045475.pool.root.1
[2025-07-26 23:02:43] -rw-r--r--. 1 boincer umatlas       529 Jul 26 23:01 boinc_task_state.xml
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas      1030 Jul 26 23:02 memory_monitor_summary.json
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas    360649 Jul 26 23:02 log.45743349._045475.job.log.tgz.1
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas      7819 Jul 26 23:02 heartbeat.json
[2025-07-26 23:02:43] -rw-r--r--. 1 boincer umatlas        27 Jul 26 23:02 wrapper_checkpoint.txt
[2025-07-26 23:02:43] -rw-r--r--. 1 boincer umatlas      6840 Jul 26 23:02 init_data.xml
[2025-07-26 23:02:43] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 23:02 boinc_mmap_file
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas        95 Jul 26 23:02 pilot_heartbeat.json
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas       820 Jul 26 23:02 pilotlog.txt
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas    419933 Jul 26 23:02 log.45743349._045475.job.log.1
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas       357 Jul 26 23:02 output.list
[2025-07-26 23:02:43] -rw-r--r--. 1 boincer umatlas       620 Jul 26 23:02 runtime_log
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas    798720 Jul 26 23:02 result.tar.gz
[2025-07-26 23:02:43] -rw-r--r--. 1 boincer umatlas      8672 Jul 26 23:02 runtime_log.err
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas       655 Jul 26 23:02 Cw9MDmfa2z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmmX1KDmwTcGGm.diag
[2025-07-26 23:02:43] -rw-r--r--. 1 boincer umatlas     21702 Jul 26 23:02 stderr.txt
[2025-07-26 23:02:43] HITS file was successfully produced:
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas 210986727 Jul 26 23:01 shared/HITS.pool.root.1
[2025-07-26 23:02:43]  *** Contents of shared directory: ***
[2025-07-26 23:02:43] total 349664
[2025-07-26 23:02:43] -rw-r--r--. 2 boincer umatlas 145699419 Jul 26 21:53 ATLAS.root_0
[2025-07-26 23:02:43] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 21:53 start_atlas.sh
[2025-07-26 23:02:43] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 21:53 input.tar.gz
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas 210986727 Jul 26 23:01 HITS.pool.root.1
[2025-07-26 23:02:43] -rw-------. 1 boincer umatlas    798720 Jul 26 23:02 result.tar.gz
23:02:44 (15068): run_atlas exited; CPU time 43967.388468
23:02:44 (15068): called boinc_finish(0)

</stderr_txt>
]]>

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