Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:04:13 (56492): wrapper (7.7.26015): starting
22:04:13 (56492): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 22:04:13] Arguments: --nthreads 12
[2025-07-26 22:04:13] Threads: 12
[2025-07-26 22:04:13] Checking for CVMFS
[2025-07-26 22:04:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 22:04:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 22:04:13] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 22:04:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 22:04:14] 2.12.6.0 1263230 17740 334212 148795 1 135 20547185 32935937 9592 16776704 0 34881586 99.605 56288381 29240 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 22:04:14] CVMFS is ok
[2025-07-26 22:04:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 22:04:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 22:04:14] Further information can be found at the LHC@home message board.
[2025-07-26 22:04:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 22:04:14] Checking for apptainer binary...
[2025-07-26 22:04:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 22:04:14] Running /usr/bin/apptainer --version
[2025-07-26 22:04:14] apptainer version 1.4.1-1.el9
[2025-07-26 22:04:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 22:04:14] c6-5-7-2.aglt2.org
[2025-07-26 22:04:14] apptainer works
[2025-07-26 22:04:14] Set ATHENA_PROC_NUMBER=12
[2025-07-26 22:04:14] Set ATHENA_CORE_NUMBER=12
[2025-07-26 22:04:14] Starting ATLAS job with PandaID=6745355714
[2025-07-26 22:04:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 23:23:43]  *** The last 200 lines of the pilot log: ***
[2025-07-26 23:23:43]  mtime=0
[2025-07-26 23:23:43]  protocol_id=None
[2025-07-26 23:23:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 23:23:43]  replicas=None
[2025-07-26 23:23:43]  scope=mc23_13p6TeV
[2025-07-26 23:23:43]  status=None
[2025-07-26 23:23:43]  status_code=0
[2025-07-26 23:23:43]  storage_token=
[2025-07-26 23:23:43]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745355714/log.45743349._043396.job.log.tgz.1
[2025-07-26 23:23:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/16/log.45743349._043396.job.log.tgz.1
[2025-07-26 23:23:43]  workdir=None
[2025-07-26 23:23:43] ]
[2025-07-26 23:23:43] 2025-07-27 03:23:04,879 | INFO     | transferring file log.45743349._043396.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745355714/log.45743349._043396.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 23:23:43] 2025-07-27 03:23:04,879 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745355714/log.45743349._043396.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._043396.job
[2025-07-26 23:23:43] 2025-07-27 03:23:04,899 | INFO     | adding to output.list: log.45743349._043396.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/16/log.45743349._043396.job.log.tg
[2025-07-26 23:23:43] 2025-07-27 03:23:04,900 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 23:23:43] 2025-07-27 03:23:04,900 | INFO     | summary of transferred files:
[2025-07-26 23:23:43] 2025-07-27 03:23:04,900 | INFO     |  -- lfn=log.45743349._043396.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 23:23:43] 2025-07-27 03:23:04,900 | INFO     | stage-out finished correctly
[2025-07-26 23:23:43] 2025-07-27 03:23:05,248 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 23:23:43] 2025-07-27 03:23:05,766 | WARNING  | process 67993 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 23:23:43] 2025-07-27 03:23:05,766 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745355714/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:23:43] 2025-07-27 03:23:05,820 | INFO     | job 6745355714 has state=finished
[2025-07-26 23:23:43] 2025-07-27 03:23:05,822 | INFO     | preparing for final server update for job 6745355714 in state='finished'
[2025-07-26 23:23:43] 2025-07-27 03:23:05,822 | INFO     | this job has now completed (state=finished)
[2025-07-26 23:23:43] 2025-07-27 03:23:05,822 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 23:23:43] 2025-07-27 03:23:05,822 | INFO     | log transfer has been attempted: DONE
[2025-07-26 23:23:43] 2025-07-27 03:23:05,823 | INFO     | job 6745355714 has finished - writing final server update
[2025-07-26 23:23:43] 2025-07-27 03:23:05,823 | INFO     | total number of processed events: 400 (read)
[2025-07-26 23:23:43] 2025-07-27 03:23:05,824 | INFO     | executing command: lscpu
[2025-07-26 23:23:43] 2025-07-27 03:23:05,891 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 23:23:43] 2025-07-27 03:23:06,048 | INFO     | number of running child processes to parent process 67993: 1
[2025-07-26 23:23:43] 2025-07-27 03:23:06,048 | INFO     | maximum number of monitored processes: 6
[2025-07-26 23:23:43] 2025-07-27 03:23:08,552 | INFO     | monitor loop #343: job 0:6745355714 is in state 'finished'
[2025-07-26 23:23:43] 2025-07-27 03:23:08,552 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 23:23:43] 2025-07-27 03:23:11,056 | INFO     | monitor loop #344: job 0:6745355714 is in state 'finished'
[2025-07-26 23:23:43] 2025-07-27 03:23:11,056 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 23:23:43] 2025-07-27 03:23:11,472 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 23:23:43] 2025-07-27 03:23:11,479 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2622.534160714285
[2025-07-26 23:23:43] 2025-07-27 03:23:11,501 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745355714/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 23:23:43] 2025-07-27 03:23:11,502 | INFO     | extracted standard info from prmon json
[2025-07-26 23:23:43] 2025-07-27 03:23:11,502 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 23:23:43] 2025-07-27 03:23:11,502 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 23:23:43] 2025-07-27 03:23:11,503 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 23:23:43] 2025-07-27 03:23:11,503 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 23:23:43] 2025-07-27 03:23:11,505 | INFO     | fitting pss+swap vs Time
[2025-07-26 23:23:43] 2025-07-27 03:23:11,506 | INFO     | sum of square deviations: 106336877.5
[2025-07-26 23:23:43] 2025-07-27 03:23:11,506 | INFO     | sum of deviations: 1223008672.4999995
[2025-07-26 23:23:43] 2025-07-27 03:23:11,506 | INFO     | mean x: 1753584303.5
[2025-07-26 23:23:43] 2025-07-27 03:23:11,506 | INFO     | mean y: 2392972.9285714286
[2025-07-26 23:23:43] 2025-07-27 03:23:11,506 | INFO     | -- intersect: -20166045875.018337
[2025-07-26 23:23:43] 2025-07-27 03:23:11,506 | INFO     | intersect: -20166045875.018337
[2025-07-26 23:23:43] 2025-07-27 03:23:11,507 | INFO     | chi2: 0.10825745576211196
[2025-07-26 23:23:43] 2025-07-27 03:23:11,507 | INFO     | -- intersect: -20166045875.018337
[2025-07-26 23:23:43] 2025-07-27 03:23:11,507 | INFO     | current memory leak: 11.50 B/s (using 70 data points, chi2=0.11)
[2025-07-26 23:23:43] 2025-07-27 03:23:11,507 | INFO     | could have reported an average CPU frequency of 2780 MHz (6 samples)
[2025-07-26 23:23:43] 2025-07-27 03:23:11,508 | INFO     | ..............................
[2025-07-26 23:23:43] 2025-07-27 03:23:11,508 | INFO     | . Timing measurements:
[2025-07-26 23:23:43] 2025-07-27 03:23:11,508 | INFO     | . get job = 0 s
[2025-07-26 23:23:43] 2025-07-27 03:23:11,508 | INFO     | . initial setup = 2 s
[2025-07-26 23:23:43] 2025-07-27 03:23:11,508 | INFO     | . payload setup = 7 s
[2025-07-26 23:23:43] 2025-07-27 03:23:11,508 | INFO     | . stage-in = 0 s
[2025-07-26 23:23:43] 2025-07-27 03:23:11,508 | INFO     | . payload execution = 4690 s
[2025-07-26 23:23:43] 2025-07-27 03:23:11,508 | INFO     | . stage-out = 0 s
[2025-07-26 23:23:43] 2025-07-27 03:23:11,508 | INFO     | . log creation = 0 s
[2025-07-26 23:23:43] 2025-07-27 03:23:11,508 | INFO     | ..............................
[2025-07-26 23:23:43] 2025-07-27 03:23:11,600 | INFO     | 
[2025-07-26 23:23:43] 2025-07-27 03:23:11,600 | INFO     | job summary report
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | --------------------------------------------------
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | PanDA job id: 6745355714
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | task id: 45743349
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | errors: (none)
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | pilot state: finished 
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | transexitcode: 0
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | exeerrorcode: 0
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | exeerrordiag: 
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | exitcode: 0
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | exitmsg: OK
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | cpuconsumptiontime: 48014 s
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | nevents: 400
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | neventsw: 0
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | pid: 67993
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | pgrp: 67993
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | corecount: 12
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | event service: False
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | sizes: {0: 2397298, 1: 2397497, 5: 2397759, 12: 2397815, 4701: 2423884, 4703: 2433066, 4710: 2433204}
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | --------------------------------------------------
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | 
[2025-07-26 23:23:43] 2025-07-27 03:23:11,601 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 23:23:43] 2025-07-27 03:23:11,620 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,620 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,620 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,621 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,621 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,621 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,621 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,621 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,621 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,621 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,621 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,621 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,621 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,621 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,621 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,621 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,622 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,622 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 23:23:43] 2025-07-27 03:23:11,622 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,622 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 23:23:43] 2025-07-27 03:23:11,622 | INFO     | job 6745355714 has completed (purged errors)
[2025-07-26 23:23:43] 2025-07-27 03:23:11,622 | INFO     | overall cleanup function is called
[2025-07-26 23:23:43] 2025-07-27 03:23:12,630 | INFO     | --- collectZombieJob: --- 10, [67993]
[2025-07-26 23:23:43] 2025-07-27 03:23:12,630 | INFO     | zombie collector waiting for pid 67993
[2025-07-26 23:23:43] 2025-07-27 03:23:12,630 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 23:23:43] 2025-07-27 03:23:12,630 | INFO     | collected zombie processes
[2025-07-26 23:23:43] 2025-07-27 03:23:12,630 | INFO     | will attempt to kill all subprocesses of pid=67993
[2025-07-26 23:23:43] 2025-07-27 03:23:12,984 | INFO     | process IDs to be killed: [67993] (in reverse order)
[2025-07-26 23:23:43] 2025-07-27 03:23:13,089 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 23:23:43] 2025-07-27 03:23:13,090 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 23:23:43] 2025-07-27 03:23:13,105 | INFO     | did not find any defunct processes belonging to 67993
[2025-07-26 23:23:43] 2025-07-27 03:23:13,119 | INFO     | did not find any defunct processes belonging to 67993
[2025-07-26 23:23:43] 2025-07-27 03:23:13,120 | INFO     | ready for new job
[2025-07-26 23:23:43] 2025-07-27 03:23:13,120 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 23:23:43] 2025-07-27 03:23:13,124 | INFO     | ***************************************
[2025-07-26 23:23:43] 2025-07-27 03:23:13,124 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 23:23:43] 2025-07-27 03:23:13,125 | INFO     | ***************************************
[2025-07-26 23:23:43] 2025-07-27 03:23:13,125 | INFO     | 
[2025-07-26 23:23:43] 2025-07-27 03:23:13,141 | INFO     | architecture information:
[2025-07-26 23:23:43] 2025-07-27 03:23:13,142 | INFO     | executing command: cat /etc/os-release
[2025-07-26 23:23:43] 2025-07-27 03:23:13,162 | INFO     | cat /etc/os-release:
[2025-07-26 23:23:43] NAME="CentOS Linux"
[2025-07-26 23:23:43] VERSION="7 (Core)"
[2025-07-26 23:23:43] ID="centos"
[2025-07-26 23:23:43] ID_LIKE="rhel fedora"
[2025-07-26 23:23:43] VERSION_ID="7"
[2025-07-26 23:23:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 23:23:43] ANSI_COLOR="0;31"
[2025-07-26 23:23:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 23:23:43] HOME_URL="https://www.centos.org/"
[2025-07-26 23:23:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 23:23:43] 
[2025-07-26 23:23:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 23:23:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 23:23:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 23:23:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 23:23:43] 
[2025-07-26 23:23:43] 2025-07-27 03:23:13,162 | INFO     | ***************************************
[2025-07-26 23:23:43] 2025-07-27 03:23:13,666 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 23:23:43] 2025-07-27 03:23:13,688 | INFO     | sufficient remaining disk space (76447481856 B)
[2025-07-26 23:23:43] 2025-07-27 03:23:13,688 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 23:23:43] 2025-07-27 03:23:13,688 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 23:23:43] 2025-07-27 03:23:13,688 | INFO     | update_server=False
[2025-07-26 23:23:43] 2025-07-27 03:23:13,689 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 23:23:43] 2025-07-27 03:23:13,689 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 23:23:43] 2025-07-27 03:23:14,081 | INFO     | all payload control threads have been joined
[2025-07-26 23:23:43] 2025-07-27 03:23:14,255 | INFO     | all data control threads have been joined
[2025-07-26 23:23:43] 2025-07-27 03:23:14,563 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:23:43] 2025-07-27 03:23:14,564 | INFO     | aborting loop
[2025-07-26 23:23:43] 2025-07-27 03:23:14,694 | INFO     | [job] retrieve thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:14,707 | INFO     | [payload] failed_post thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:14,824 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:14,901 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:15,086 | INFO     | [payload] control thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:15,182 | INFO     | all job control threads have been joined
[2025-07-26 23:23:43] 2025-07-27 03:23:15,219 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:15,261 | INFO     | [data] control thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:15,389 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:15,569 | INFO     | [job] job monitor thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:15,584 | INFO     | [payload] validate_post thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:15,694 | INFO     | [data] copytool_out thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:15,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 23:23:43] 2025-07-27 03:23:15,877 | INFO     | [data] copytool_in thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:15,920 | INFO     | [job] validate thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:16,187 | INFO     | [job] control thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:16,609 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 23:23:43] 2025-07-27 03:23:17,615 | INFO     | [job] queue monitor thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:19,857 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 23:23:43] 2025-07-27 03:23:19,972 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140022331787072)>', '<ExcThread(monitor, started 140021545813760)>']
[2025-07-26 23:23:43] 2025-07-27 03:23:24,997 | INFO     | all workflow threads have been joined
[2025-07-26 23:23:43] 2025-07-27 03:23:24,998 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 23:23:43] 2025-07-27 03:23:24,998 | INFO     | traces error code: 0
[2025-07-26 23:23:43] 2025-07-27 03:23:24,998 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 23:23:43] 2025-07-27 03:23:43,338 | INFO     | PID=60455 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 23:23:43] 2025-07-27 03:23:43,339 | INFO     | .. there are 14 such processes running
[2025-07-26 23:23:43] 2025-07-27 03:23:43,339 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 23:23:43] 2025-07-27 03:23:43,339 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 23:23:43] 2025-07-27 03:23:43,339 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 23:23:43] 2025-07-27 03:23:43,339 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 23:23:43] 2025-07-27 03:23:43,339 | INFO     | [monitor] control thread has ended
[2025-07-26 23:23:43] 2025-07-27 03:23:43,562 [wrapper] ==== pilot stdout END ====
[2025-07-26 23:23:43] 2025-07-27 03:23:43,565 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 23:23:43] 2025-07-27 03:23:43,568 [wrapper] pilotpid: 60455
[2025-07-26 23:23:43] 2025-07-27 03:23:43,573 [wrapper] Pilot exit status: 0
[2025-07-26 23:23:43] 2025-07-27 03:23:43,585 [wrapper] pandaids: 6745355714
[2025-07-26 23:23:43] 2025-07-27 03:23:43,647 [wrapper] cleanup supervisor_pilot  253184 60456
[2025-07-26 23:23:43] 2025-07-27 03:23:43,650 [wrapper] Test setup, not cleaning
[2025-07-26 23:23:43] 2025-07-27 03:23:43,653 [wrapper] apfmon messages muted
[2025-07-26 23:23:43] 2025-07-27 03:23:43,656 [wrapper] ==== wrapper stdout END ====
[2025-07-26 23:23:43] 2025-07-27 03:23:43,662 [wrapper] ==== wrapper stderr END ====
[2025-07-26 23:23:43]  *** Error codes and diagnostics ***
[2025-07-26 23:23:43]     "exeErrorCode": 0,
[2025-07-26 23:23:43]     "exeErrorDiag": "",
[2025-07-26 23:23:43]     "pilotErrorCode": 0,
[2025-07-26 23:23:43]     "pilotErrorDiag": "",
[2025-07-26 23:23:43]  *** Listing of results directory ***
[2025-07-26 23:23:43] total 352404
[2025-07-26 23:23:43] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 15:43 pilot3.tar.gz
[2025-07-26 23:23:43] -rwx------. 1 boincer umatlas     36292 Jul 26 15:49 runpilot2-wrapper.sh
[2025-07-26 23:23:43] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 15:49 queuedata.json
[2025-07-26 23:23:43] -rw-r--r--. 1 boincer umatlas       100 Jul 26 22:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 23:23:43] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 22:04 run_atlas
[2025-07-26 23:23:43] -rw-r--r--. 1 boincer umatlas       105 Jul 26 22:04 job.xml
[2025-07-26 23:23:43] -rw-r--r--. 2 boincer umatlas 142694414 Jul 26 22:04 EVNT.45743347._002479.pool.root.1
[2025-07-26 23:23:43] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 22:04 start_atlas.sh
[2025-07-26 23:23:43] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 22:04 shared
[2025-07-26 23:23:43] -rw-r--r--. 2 boincer umatlas    542883 Jul 26 22:04 input.tar.gz
[2025-07-26 23:23:43] -rw-r--r--. 1 boincer umatlas         0 Jul 26 22:04 boinc_lockfile
[2025-07-26 23:23:43] -rw-r--r--. 1 boincer umatlas      2560 Jul 26 22:04 pandaJob.out
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas    980125 Jul 26 22:04 agis_schedconf.cvmfs.json
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas   1593052 Jul 26 22:04 agis_ddmendpoints.agis.ALL.json
[2025-07-26 23:23:43] drwx------. 4 boincer umatlas      4096 Jul 26 22:04 pilot3
[2025-07-26 23:23:43] -rw-r--r--. 1 boincer umatlas      6841 Jul 26 23:21 init_data.xml
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas 212671450 Jul 26 23:22 HITS.45743349._043396.pool.root.1
[2025-07-26 23:23:43] -rw-r--r--. 1 boincer umatlas       530 Jul 26 23:22 boinc_task_state.xml
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas        95 Jul 26 23:22 pilot_heartbeat.json
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas      1051 Jul 26 23:22 memory_monitor_summary.json
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas    351201 Jul 26 23:23 log.45743349._043396.job.log.tgz.1
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas      7813 Jul 26 23:23 heartbeat.json
[2025-07-26 23:23:43] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 23:23 boinc_mmap_file
[2025-07-26 23:23:43] -rw-r--r--. 1 boincer umatlas        27 Jul 26 23:23 wrapper_checkpoint.txt
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas       821 Jul 26 23:23 pilotlog.txt
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas    461077 Jul 26 23:23 log.45743349._043396.job.log.1
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas       357 Jul 26 23:23 output.list
[2025-07-26 23:23:43] -rw-r--r--. 1 boincer umatlas       620 Jul 26 23:23 runtime_log
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas    829440 Jul 26 23:23 result.tar.gz
[2025-07-26 23:23:43] -rw-r--r--. 1 boincer umatlas      8662 Jul 26 23:23 runtime_log.err
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas       654 Jul 26 23:23 RDyNDmy4zz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmpL1KDmFUihhn.diag
[2025-07-26 23:23:43] -rw-r--r--. 1 boincer umatlas     21745 Jul 26 23:23 stderr.txt
[2025-07-26 23:23:43] HITS file was successfully produced:
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas 212671450 Jul 26 23:22 shared/HITS.pool.root.1
[2025-07-26 23:23:43]  *** Contents of shared directory: ***
[2025-07-26 23:23:43] total 348404
[2025-07-26 23:23:43] -rw-r--r--. 2 boincer umatlas 142694414 Jul 26 22:04 ATLAS.root_0
[2025-07-26 23:23:43] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 22:04 start_atlas.sh
[2025-07-26 23:23:43] -rw-r--r--. 2 boincer umatlas    542883 Jul 26 22:04 input.tar.gz
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas 212671450 Jul 26 23:22 HITS.pool.root.1
[2025-07-26 23:23:43] -rw-------. 1 boincer umatlas    829440 Jul 26 23:23 result.tar.gz
23:24:05 (56492): run_atlas exited; CPU time 48096.455728
23:24:05 (56492): called boinc_finish(0)

</stderr_txt>
]]>

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