Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:30:34 (486343): wrapper (7.7.26015): starting
15:30:34 (486343): wrapper: running run_atlas (--nthreads 3)
[2025-07-27 15:30:34] Arguments: --nthreads 3
[2025-07-27 15:30:34] Threads: 3
[2025-07-27 15:30:34] Checking for CVMFS
[2025-07-27 15:30:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:30:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:30:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:30:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:30:34] 2.9.2.0 3466416 4267 86108 148813 2 56 35180231 36864000 0 130560 0 3238042 99.990 150024 2035 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-27 15:30:34] CVMFS is ok
[2025-07-27 15:30:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 15:30:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 15:30:34] Further information can be found at the LHC@home message board.
[2025-07-27 15:30:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:30:34] Checking for apptainer binary...
[2025-07-27 15:30:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:30:34] Running /usr/bin/apptainer --version
[2025-07-27 15:30:34] apptainer version 1.4.1-1.1
[2025-07-27 15:30:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:30:34] magicA252
[2025-07-27 15:30:34] apptainer works
[2025-07-27 15:30:34] Set ATHENA_PROC_NUMBER=3
[2025-07-27 15:30:34] Set ATHENA_CORE_NUMBER=3
[2025-07-27 15:30:34] Starting ATLAS job with PandaID=6745263772
[2025-07-27 15:30:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 17:05:53]  *** The last 200 lines of the pilot log: ***
[2025-07-27 17:05:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b4/2c/log.45743349._041217.job.log.tgz.1
[2025-07-27 17:05:53]  workdir=None
[2025-07-27 17:05:53] ]
[2025-07-27 17:05:53] 2025-07-27 15:05:13,112 | INFO     | transferring file log.45743349._041217.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6745263772/log.45743349._041217.job.log.tgz.1 to /local/data/boinc/
[2025-07-27 17:05:53] 2025-07-27 15:05:13,112 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6745263772/log.45743349._041217.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0412
[2025-07-27 17:05:53] 2025-07-27 15:05:13,125 | INFO     | adding to output.list: log.45743349._041217.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b4/2c/log.45743349._041217.job.log.tg
[2025-07-27 17:05:53] 2025-07-27 15:05:13,126 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 17:05:53] 2025-07-27 15:05:13,126 | INFO     | summary of transferred files:
[2025-07-27 17:05:53] 2025-07-27 15:05:13,126 | INFO     |  -- lfn=log.45743349._041217.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 17:05:53] 2025-07-27 15:05:13,126 | INFO     | stage-out finished correctly
[2025-07-27 17:05:53] 2025-07-27 15:05:15,813 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 17:05:53] 2025-07-27 15:05:17,693 | INFO     | job 6745263772 has state=finished
[2025-07-27 17:05:53] 2025-07-27 15:05:17,693 | INFO     | preparing for final server update for job 6745263772 in state='finished'
[2025-07-27 17:05:53] 2025-07-27 15:05:18,320 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-27 17:05:53] 2025-07-27 15:05:18,320 | INFO     | this job has now completed (state=finished)
[2025-07-27 17:05:53] 2025-07-27 15:05:18,320 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 17:05:53] 2025-07-27 15:05:18,320 | INFO     | log transfer has been attempted: DONE
[2025-07-27 17:05:53] 2025-07-27 15:05:18,320 | INFO     | job 6745263772 has finished - writing final server update
[2025-07-27 17:05:53] 2025-07-27 15:05:18,320 | INFO     | total number of processed events: 400 (read)
[2025-07-27 17:05:53] 2025-07-27 15:05:18,321 | INFO     | executing command: lscpu
[2025-07-27 17:05:53] 2025-07-27 15:05:18,335 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 17:05:53] 2025-07-27 15:05:18,345 | WARNING  | process 496480 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 17:05:53] 2025-07-27 15:05:18,345 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745263772/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:05:53] 2025-07-27 15:05:18,346 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745263772/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:05:53] 2025-07-27 15:05:18,346 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2573645 B
[2025-07-27 17:05:53] 2025-07-27 15:05:18,346 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15795 B
[2025-07-27 17:05:53] 2025-07-27 15:05:18,346 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-27 17:05:53] 2025-07-27 15:05:20,666 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 17:05:53] 2025-07-27 15:05:20,669 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3858.3995
[2025-07-27 17:05:53] 2025-07-27 15:05:20,671 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745263772/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 17:05:53] 2025-07-27 15:05:20,671 | INFO     | extracted standard info from prmon json
[2025-07-27 17:05:53] 2025-07-27 15:05:20,671 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 17:05:53] 2025-07-27 15:05:20,671 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 17:05:53] 2025-07-27 15:05:20,672 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 17:05:53] 2025-07-27 15:05:20,672 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 17:05:53] 2025-07-27 15:05:20,672 | INFO     | fitting pss+swap vs Time
[2025-07-27 17:05:53] 2025-07-27 15:05:20,672 | INFO     | sum of square deviations: 197203697.5
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | sum of deviations: -12386425851.500004
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | mean x: 1753625957.5
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | mean y: 2447324.593023256
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | -- intersect: 110148241593.17892
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | intersect: 110148241593.17892
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | chi2: 0.08904541815424448
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | -- intersect: 110148241593.17892
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | current memory leak: -62.81 B/s (using 86 data points, chi2=0.09)
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | could have reported an average CPU frequency of 4025 MHz (7 samples)
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | ..............................
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | . Timing measurements:
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | . get job = 0 s
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | . initial setup = 1 s
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | . payload setup = 3 s
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | . stage-in = 0 s
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | . payload execution = 5652 s
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | . stage-out = 0 s
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | . log creation = 0 s
[2025-07-27 17:05:53] 2025-07-27 15:05:20,673 | INFO     | ..............................
[2025-07-27 17:05:53] 2025-07-27 15:05:20,685 | INFO     | sufficient remaining disk space (364634963968 B)
[2025-07-27 17:05:53] 2025-07-27 15:05:20,691 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 17:05:53] 2025-07-27 15:05:20,705 | INFO     | 
[2025-07-27 17:05:53] 2025-07-27 15:05:20,705 | INFO     | job summary report
[2025-07-27 17:05:53] 2025-07-27 15:05:20,705 | INFO     | --------------------------------------------------
[2025-07-27 17:05:53] 2025-07-27 15:05:20,705 | INFO     | PanDA job id: 6745263772
[2025-07-27 17:05:53] 2025-07-27 15:05:20,705 | INFO     | task id: 45743349
[2025-07-27 17:05:53] 2025-07-27 15:05:20,705 | INFO     | errors: (none)
[2025-07-27 17:05:53] 2025-07-27 15:05:20,705 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 17:05:53] 2025-07-27 15:05:20,705 | INFO     | pilot state: finished 
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | transexitcode: 0
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | exeerrorcode: 0
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | exeerrordiag: 
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | exitcode: 0
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | exitmsg: OK
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | cpuconsumptiontime: 16348 s
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | nevents: 400
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | neventsw: 0
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | pid: 496480
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | pgrp: 496480
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | corecount: 3
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | event service: False
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | sizes: {0: 2397307, 1: 2397506, 3: 2397768, 11: 2397796, 5660: 2433579, 5663: 2433579, 5668: 2433901}
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | --------------------------------------------------
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | 
[2025-07-27 17:05:53] 2025-07-27 15:05:20,706 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-27 17:05:53] 2025-07-27 15:05:20,708 | INFO     | size of work directory /local/data/boinc/slots/0/PanDA_Pilot-6745263772: 2903624 B (within 2537553920 B limit)
[2025-07-27 17:05:53] 2025-07-27 15:05:20,709 | INFO     | pfn file=/local/data/boinc/slots/0/PanDA_Pilot-6745263772/HITS.45743349._041217.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 17:05:53] 2025-07-27 15:05:20,709 | INFO     | total size of present files: 0 B (workdir size: 2903624 B)
[2025-07-27 17:05:53] 2025-07-27 15:05:20,709 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-6745263772/HITS.45743349._041217.pool.root.1 since it does not exist
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,719 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,720 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,720 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,720 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 17:05:53] 2025-07-27 15:05:20,720 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,720 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 17:05:53] 2025-07-27 15:05:20,720 | INFO     | job 6745263772 has completed (purged errors)
[2025-07-27 17:05:53] 2025-07-27 15:05:20,720 | INFO     | overall cleanup function is called
[2025-07-27 17:05:53] 2025-07-27 15:05:20,750 | INFO     | number of running child processes to parent process 496480: 1
[2025-07-27 17:05:53] 2025-07-27 15:05:20,750 | INFO     | maximum number of monitored processes: 6
[2025-07-27 17:05:53] 2025-07-27 15:05:20,750 | INFO     | aborting job monitoring since job object (job id=6745263772) has expired
[2025-07-27 17:05:53] 2025-07-27 15:05:20,955 | INFO     | PID=489980 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 17:05:53] 2025-07-27 15:05:21,727 | INFO     | --- collectZombieJob: --- 10, [496480]
[2025-07-27 17:05:53] 2025-07-27 15:05:21,727 | INFO     | zombie collector waiting for pid 496480
[2025-07-27 17:05:53] 2025-07-27 15:05:21,727 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 17:05:53] 2025-07-27 15:05:21,727 | INFO     | collected zombie processes
[2025-07-27 17:05:53] 2025-07-27 15:05:21,727 | INFO     | will attempt to kill all subprocesses of pid=496480
[2025-07-27 17:05:53] 2025-07-27 15:05:21,766 | INFO     | process IDs to be killed: [496480] (in reverse order)
[2025-07-27 17:05:53] 2025-07-27 15:05:21,790 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 17:05:53] 2025-07-27 15:05:21,790 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 17:05:53] 2025-07-27 15:05:21,791 | INFO     | did not find any defunct processes belonging to 496480
[2025-07-27 17:05:53] 2025-07-27 15:05:21,792 | INFO     | did not find any defunct processes belonging to 496480
[2025-07-27 17:05:53] 2025-07-27 15:05:21,792 | INFO     | ready for new job
[2025-07-27 17:05:53] 2025-07-27 15:05:21,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 17:05:53] 2025-07-27 15:05:21,793 | INFO     | ***************************************
[2025-07-27 17:05:53] 2025-07-27 15:05:21,793 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 17:05:53] 2025-07-27 15:05:21,793 | INFO     | ***************************************
[2025-07-27 17:05:53] 2025-07-27 15:05:21,793 | INFO     | 
[2025-07-27 17:05:53] 2025-07-27 15:05:21,793 | INFO     | architecture information:
[2025-07-27 17:05:53] 2025-07-27 15:05:21,794 | INFO     | executing command: cat /etc/os-release
[2025-07-27 17:05:53] 2025-07-27 15:05:21,802 | INFO     | cat /etc/os-release:
[2025-07-27 17:05:53] NAME="CentOS Linux"
[2025-07-27 17:05:53] VERSION="7 (Core)"
[2025-07-27 17:05:53] ID="centos"
[2025-07-27 17:05:53] ID_LIKE="rhel fedora"
[2025-07-27 17:05:53] VERSION_ID="7"
[2025-07-27 17:05:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 17:05:53] ANSI_COLOR="0;31"
[2025-07-27 17:05:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 17:05:53] HOME_URL="https://www.centos.org/"
[2025-07-27 17:05:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 17:05:53] 
[2025-07-27 17:05:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 17:05:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 17:05:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 17:05:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 17:05:53] 
[2025-07-27 17:05:53] 2025-07-27 15:05:21,802 | INFO     | ***************************************
[2025-07-27 17:05:53] 2025-07-27 15:05:22,305 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-27 17:05:53] 2025-07-27 15:05:22,318 | INFO     | sufficient remaining disk space (364638109696 B)
[2025-07-27 17:05:53] 2025-07-27 15:05:22,318 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 17:05:53] 2025-07-27 15:05:22,318 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 17:05:53] 2025-07-27 15:05:22,318 | INFO     | update_server=False
[2025-07-27 17:05:53] 2025-07-27 15:05:22,318 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 17:05:53] 2025-07-27 15:05:22,318 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:05:53] 2025-07-27 15:05:22,319 | INFO     | aborting loop
[2025-07-27 17:05:53] 2025-07-27 15:05:22,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 17:05:53] 2025-07-27 15:05:22,319 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 17:05:53] 2025-07-27 15:05:22,443 | INFO     | all payload control threads have been joined
[2025-07-27 17:05:53] 2025-07-27 15:05:23,187 | INFO     | all data control threads have been joined
[2025-07-27 17:05:53] 2025-07-27 15:05:23,319 | INFO     | [job] job monitor thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:23,320 | INFO     | [job] queue monitor thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:23,320 | INFO     | [job] retrieve thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:23,449 | INFO     | [payload] control thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:23,454 | INFO     | [payload] validate_post thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:23,618 | INFO     | all job control threads have been joined
[2025-07-27 17:05:53] 2025-07-27 15:05:23,673 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 17:05:53] 2025-07-27 15:05:23,676 | INFO     | [data] copytool_in thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:23,746 | INFO     | [payload] failed_post thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:24,062 | INFO     | [job] validate thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:24,160 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:24,160 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:24,188 | INFO     | [data] control thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:24,318 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:24,624 | INFO     | [job] control thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:25,679 | INFO     | [data] copytool_out thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:26,325 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:32,824 | INFO     | job.realtimelogging is not enabled
[2025-07-27 17:05:53] 2025-07-27 15:05:33,830 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 17:05:53] 2025-07-27 15:05:34,937 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140324015888192)>', '<ExcThread(monitor, started 140323057547008)>']
[2025-07-27 17:05:53] 2025-07-27 15:05:39,951 | INFO     | all workflow threads have been joined
[2025-07-27 17:05:53] 2025-07-27 15:05:39,952 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 17:05:53] 2025-07-27 15:05:39,952 | INFO     | traces error code: 0
[2025-07-27 17:05:53] 2025-07-27 15:05:39,952 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 17:05:53] 2025-07-27 15:05:53,062 | INFO     | PID=489980 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 17:05:53] 2025-07-27 15:05:53,062 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 17:05:53] 2025-07-27 15:05:53,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 17:05:53] 2025-07-27 15:05:53,062 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 17:05:53] 2025-07-27 15:05:53,063 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 17:05:53] 2025-07-27 15:05:53,063 | INFO     | [monitor] control thread has ended
[2025-07-27 17:05:53] 2025-07-27 15:05:53,108 [wrapper] ==== pilot stdout END ====
[2025-07-27 17:05:53] 2025-07-27 15:05:53,111 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 17:05:53] 2025-07-27 15:05:53,113 [wrapper] pilotpid: 489980
[2025-07-27 17:05:53] 2025-07-27 15:05:53,115 [wrapper] Pilot exit status: 0
[2025-07-27 17:05:53] 2025-07-27 15:05:53,123 [wrapper] pandaids: 6745263772
[2025-07-27 17:05:53] 2025-07-27 15:05:53,139 [wrapper] cleanup supervisor_pilot  509107 489981
[2025-07-27 17:05:53] 2025-07-27 15:05:53,141 [wrapper] Test setup, not cleaning
[2025-07-27 17:05:53] 2025-07-27 15:05:53,144 [wrapper] apfmon messages muted
[2025-07-27 17:05:53] 2025-07-27 15:05:53,146 [wrapper] ==== wrapper stdout END ====
[2025-07-27 17:05:53] 2025-07-27 15:05:53,148 [wrapper] ==== wrapper stderr END ====
[2025-07-27 17:05:53]  *** Error codes and diagnostics ***
[2025-07-27 17:05:53]     "exeErrorCode": 0,
[2025-07-27 17:05:53]     "exeErrorDiag": "",
[2025-07-27 17:05:53]     "pilotErrorCode": 0,
[2025-07-27 17:05:53]     "pilotErrorDiag": "",
[2025-07-27 17:05:53]  *** Listing of results directory ***
[2025-07-27 17:05:53] total 438188
[2025-07-27 17:05:53] -rw-r--r-- 1 boinc boinc    530466 Jul 26 18:45 pilot3.tar.gz
[2025-07-27 17:05:53] -rwx------ 1 boinc boinc     36292 Jul 26 18:50 runpilot2-wrapper.sh
[2025-07-27 17:05:53] -rw-r--r-- 1 boinc boinc      5112 Jul 26 18:50 queuedata.json
[2025-07-27 17:05:53] -rw-r--r-- 1 boinc boinc       100 Jul 27 15:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 17:05:53] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 15:30 run_atlas
[2025-07-27 17:05:53] -rw-r--r-- 1 boinc boinc       105 Jul 27 15:30 job.xml
[2025-07-27 17:05:53] -rw-r--r-- 2 boinc boinc 230729220 Jul 27 15:30 EVNT.45743347._002447.pool.root.1
[2025-07-27 17:05:53] -rw-r--r-- 2 boinc boinc    542892 Jul 27 15:30 input.tar.gz
[2025-07-27 17:05:53] -rw-r--r-- 2 boinc boinc     15095 Jul 27 15:30 start_atlas.sh
[2025-07-27 17:05:53] drwxrwx--x 2 boinc boinc      4096 Jul 27 15:30 shared
[2025-07-27 17:05:53] -rw-r--r-- 1 boinc boinc         0 Jul 27 15:30 boinc_setup_complete
[2025-07-27 17:05:53] -rw-r--r-- 1 boinc boinc      6526 Jul 27 15:30 init_data.xml
[2025-07-27 17:05:53] -rw-r--r-- 1 boinc boinc         0 Jul 27 15:30 boinc_lockfile
[2025-07-27 17:05:53] -rw-r--r-- 1 boinc boinc      2563 Jul 27 15:30 pandaJob.out
[2025-07-27 17:05:53] -rw------- 1 boinc boinc    980117 Jul 27 15:30 agis_schedconf.cvmfs.json
[2025-07-27 17:05:53] -rw------- 1 boinc boinc   1593052 Jul 27 15:30 agis_ddmendpoints.agis.ALL.json
[2025-07-27 17:05:53] drwx------ 4 boinc boinc      4096 Jul 27 15:30 pilot3
[2025-07-27 17:05:53] -rw------- 1 boinc boinc 212499612 Jul 27 17:04 HITS.45743349._041217.pool.root.1
[2025-07-27 17:05:53] -rw-r--r-- 1 boinc boinc       530 Jul 27 17:05 boinc_task_state.xml
[2025-07-27 17:05:53] -rw------- 1 boinc boinc        95 Jul 27 17:05 pilot_heartbeat.json
[2025-07-27 17:05:53] -rw------- 1 boinc boinc      1033 Jul 27 17:05 memory_monitor_summary.json
[2025-07-27 17:05:53] -rw------- 1 boinc boinc    251850 Jul 27 17:05 log.45743349._041217.job.log.tgz.1
[2025-07-27 17:05:53] -rw------- 1 boinc boinc      7763 Jul 27 17:05 heartbeat.json
[2025-07-27 17:05:53] -rw-r--r-- 1 boinc boinc        27 Jul 27 17:05 wrapper_checkpoint.txt
[2025-07-27 17:05:53] -rw-r--r-- 1 boinc boinc      8192 Jul 27 17:05 boinc_mmap_file
[2025-07-27 17:05:53] -rw------- 1 boinc boinc       746 Jul 27 17:05 pilotlog.txt
[2025-07-27 17:05:53] -rw------- 1 boinc boinc    547364 Jul 27 17:05 log.45743349._041217.job.log.1
[2025-07-27 17:05:53] -rw------- 1 boinc boinc       357 Jul 27 17:05 output.list
[2025-07-27 17:05:53] -rw-r--r-- 1 boinc boinc       620 Jul 27 17:05 runtime_log
[2025-07-27 17:05:53] -rw------- 1 boinc boinc    819200 Jul 27 17:05 result.tar.gz
[2025-07-27 17:05:53] -rw-r--r-- 1 boinc boinc      8749 Jul 27 17:05 runtime_log.err
[2025-07-27 17:05:53] -rw------- 1 boinc boinc       661 Jul 27 17:05 JWFKDmyHxz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmL60KDmiMNPSn.diag
[2025-07-27 17:05:53] -rw-r--r-- 1 boinc boinc     22672 Jul 27 17:05 stderr.txt
[2025-07-27 17:05:53] HITS file was successfully produced:
[2025-07-27 17:05:53] -rw------- 1 boinc boinc 212499612 Jul 27 17:04 shared/HITS.pool.root.1
[2025-07-27 17:05:53]  *** Contents of shared directory: ***
[2025-07-27 17:05:53] total 434200
[2025-07-27 17:05:53] -rw-r--r-- 2 boinc boinc 230729220 Jul 27 15:30 ATLAS.root_0
[2025-07-27 17:05:53] -rw-r--r-- 2 boinc boinc    542892 Jul 27 15:30 input.tar.gz
[2025-07-27 17:05:53] -rw-r--r-- 2 boinc boinc     15095 Jul 27 15:30 start_atlas.sh
[2025-07-27 17:05:53] -rw------- 1 boinc boinc 212499612 Jul 27 17:04 HITS.pool.root.1
[2025-07-27 17:05:53] -rw------- 1 boinc boinc    819200 Jul 27 17:05 result.tar.gz
17:05:54 (486343): run_atlas exited; CPU time 16356.162298
17:05:54 (486343): called boinc_finish(0)

</stderr_txt>
]]>

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