Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:34:23 (3797546): wrapper (7.7.26015): starting
20:34:23 (3797546): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 20:34:23] Arguments: --nthreads 12
[2025-07-26 20:34:23] Threads: 12
[2025-07-26 20:34:23] Checking for CVMFS
[2025-07-26 20:34:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 20:34:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 20:34:23] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 20:34:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 20:34:24] 2.13.1.0 130251 5983 130668 148794 2 64 36674199 40960000 5388 16776704 0 6217532 99.736 7603776 35963 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 20:34:24] CVMFS is ok
[2025-07-26 20:34:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 20:34:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 20:34:24] Further information can be found at the LHC@home message board.
[2025-07-26 20:34:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 20:34:24] Checking for apptainer binary...
[2025-07-26 20:34:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 20:34:24] Running /usr/bin/apptainer --version
[2025-07-26 20:34:24] apptainer version 1.4.1-1.el9
[2025-07-26 20:34:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 20:34:24] c-210-8.aglt2.org
[2025-07-26 20:34:24] apptainer works
[2025-07-26 20:34:24] Set ATHENA_PROC_NUMBER=12
[2025-07-26 20:34:24] Set ATHENA_CORE_NUMBER=12
[2025-07-26 20:34:24] Starting ATLAS job with PandaID=6744931676
[2025-07-26 20:34:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 22:13:41]  *** The last 200 lines of the pilot log: ***
[2025-07-26 22:13:41]  is_tar=False
[2025-07-26 22:13:41]  lfn=log.45743349._009882.job.log.tgz.1
[2025-07-26 22:13:41]  mtime=0
[2025-07-26 22:13:41]  protocol_id=None
[2025-07-26 22:13:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 22:13:41]  replicas=None
[2025-07-26 22:13:41]  scope=mc23_13p6TeV
[2025-07-26 22:13:41]  status=None
[2025-07-26 22:13:41]  status_code=0
[2025-07-26 22:13:41]  storage_token=
[2025-07-26 22:13:41]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6744931676/log.45743349._009882.job.log.tgz.1
[2025-07-26 22:13:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/6c/log.45743349._009882.job.log.tgz.1
[2025-07-26 22:13:41]  workdir=None
[2025-07-26 22:13:41] ]
[2025-07-26 22:13:41] 2025-07-27 02:13:03,556 | INFO     | transferring file log.45743349._009882.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6744931676/log.45743349._009882.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 22:13:41] 2025-07-27 02:13:03,557 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6744931676/log.45743349._009882.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._009882.job
[2025-07-26 22:13:41] 2025-07-27 02:13:03,578 | INFO     | adding to output.list: log.45743349._009882.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/6c/log.45743349._009882.job.log.tg
[2025-07-26 22:13:41] 2025-07-27 02:13:03,579 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 22:13:41] 2025-07-27 02:13:03,579 | INFO     | summary of transferred files:
[2025-07-26 22:13:41] 2025-07-27 02:13:03,579 | INFO     |  -- lfn=log.45743349._009882.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 22:13:41] 2025-07-27 02:13:03,579 | INFO     | stage-out finished correctly
[2025-07-26 22:13:41] 2025-07-27 02:13:03,694 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 22:13:41] 2025-07-27 02:13:04,171 | INFO     | job 6744931676 has state=finished
[2025-07-26 22:13:41] 2025-07-27 02:13:04,171 | INFO     | preparing for final server update for job 6744931676 in state='finished'
[2025-07-26 22:13:41] 2025-07-27 02:13:04,172 | INFO     | this job has now completed (state=finished)
[2025-07-26 22:13:41] 2025-07-27 02:13:04,172 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 22:13:41] 2025-07-27 02:13:04,172 | INFO     | log transfer has been attempted: DONE
[2025-07-26 22:13:41] 2025-07-27 02:13:04,172 | INFO     | job 6744931676 has finished - writing final server update
[2025-07-26 22:13:41] 2025-07-27 02:13:04,173 | INFO     | total number of processed events: 400 (read)
[2025-07-26 22:13:41] 2025-07-27 02:13:04,174 | INFO     | executing command: lscpu
[2025-07-26 22:13:41] 2025-07-27 02:13:04,229 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 22:13:41] 2025-07-27 02:13:04,855 | INFO     | PID=3801682 has CPU usage=12.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-26 22:13:41] 2025-07-27 02:13:04,855 | INFO     | .. there are 7 such processes running
[2025-07-26 22:13:41] 2025-07-27 02:13:05,028 | INFO     | monitor loop #438: job 0:6744931676 is in state 'finished'
[2025-07-26 22:13:41] 2025-07-27 02:13:05,029 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 22:13:41] 2025-07-27 02:13:07,531 | INFO     | monitor loop #439: job 0:6744931676 is in state 'finished'
[2025-07-26 22:13:41] 2025-07-27 02:13:07,531 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 22:13:41] 2025-07-27 02:13:08,733 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 22:13:41] 2025-07-27 02:13:08,743 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2436.168958333333
[2025-07-26 22:13:41] 2025-07-27 02:13:08,755 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744931676/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 22:13:41] 2025-07-27 02:13:08,756 | INFO     | extracted standard info from prmon json
[2025-07-26 22:13:41] 2025-07-27 02:13:08,756 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 22:13:41] 2025-07-27 02:13:08,756 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 22:13:41] 2025-07-27 02:13:08,757 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 22:13:41] 2025-07-27 02:13:08,757 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 22:13:41] 2025-07-27 02:13:08,760 | INFO     | fitting pss+swap vs Time
[2025-07-26 22:13:41] 2025-07-27 02:13:08,760 | INFO     | sum of square deviations: 226022842.5
[2025-07-26 22:13:41] 2025-07-27 02:13:08,761 | INFO     | sum of deviations: -20345537278.0
[2025-07-26 22:13:41] 2025-07-27 02:13:08,761 | INFO     | mean x: 1753579523.5
[2025-07-26 22:13:41] 2025-07-27 02:13:08,761 | INFO     | mean y: 2892368.311111111
[2025-07-26 22:13:41] 2025-07-27 02:13:08,761 | INFO     | -- intersect: 157852060048.37302
[2025-07-26 22:13:41] 2025-07-27 02:13:08,762 | INFO     | intersect: 157852060048.37302
[2025-07-26 22:13:41] 2025-07-27 02:13:08,762 | INFO     | chi2: 0.19026428580295116
[2025-07-26 22:13:41] 2025-07-27 02:13:08,762 | INFO     | -- intersect: 157852060048.37302
[2025-07-26 22:13:41] 2025-07-27 02:13:08,762 | INFO     | current memory leak: -90.02 B/s (using 90 data points, chi2=0.19)
[2025-07-26 22:13:41] 2025-07-27 02:13:08,763 | INFO     | could have reported an average CPU frequency of 2509 MHz (7 samples)
[2025-07-26 22:13:41] 2025-07-27 02:13:08,763 | INFO     | ..............................
[2025-07-26 22:13:41] 2025-07-27 02:13:08,763 | INFO     | . Timing measurements:
[2025-07-26 22:13:41] 2025-07-27 02:13:08,764 | INFO     | . get job = 0 s
[2025-07-26 22:13:41] 2025-07-27 02:13:08,764 | INFO     | . initial setup = 2 s
[2025-07-26 22:13:41] 2025-07-27 02:13:08,764 | INFO     | . payload setup = 7 s
[2025-07-26 22:13:41] 2025-07-27 02:13:08,764 | INFO     | . stage-in = 0 s
[2025-07-26 22:13:41] 2025-07-27 02:13:08,764 | INFO     | . payload execution = 5877 s
[2025-07-26 22:13:41] 2025-07-27 02:13:08,764 | INFO     | . stage-out = 1 s
[2025-07-26 22:13:41] 2025-07-27 02:13:08,764 | INFO     | . log creation = 0 s
[2025-07-26 22:13:41] 2025-07-27 02:13:08,765 | INFO     | ..............................
[2025-07-26 22:13:41] 2025-07-27 02:13:08,870 | INFO     | 
[2025-07-26 22:13:41] 2025-07-27 02:13:08,870 | INFO     | job summary report
[2025-07-26 22:13:41] 2025-07-27 02:13:08,871 | INFO     | --------------------------------------------------
[2025-07-26 22:13:41] 2025-07-27 02:13:08,871 | INFO     | PanDA job id: 6744931676
[2025-07-26 22:13:41] 2025-07-27 02:13:08,871 | INFO     | task id: 45743349
[2025-07-26 22:13:41] 2025-07-27 02:13:08,871 | INFO     | errors: (none)
[2025-07-26 22:13:41] 2025-07-27 02:13:08,871 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 22:13:41] 2025-07-27 02:13:08,871 | INFO     | pilot state: finished 
[2025-07-26 22:13:41] 2025-07-27 02:13:08,871 | INFO     | transexitcode: 0
[2025-07-26 22:13:41] 2025-07-27 02:13:08,871 | INFO     | exeerrorcode: 0
[2025-07-26 22:13:41] 2025-07-27 02:13:08,872 | INFO     | exeerrordiag: 
[2025-07-26 22:13:41] 2025-07-27 02:13:08,872 | INFO     | exitcode: 0
[2025-07-26 22:13:41] 2025-07-27 02:13:08,872 | INFO     | exitmsg: OK
[2025-07-26 22:13:41] 2025-07-27 02:13:08,872 | INFO     | cpuconsumptiontime: 62389 s
[2025-07-26 22:13:41] 2025-07-27 02:13:08,872 | INFO     | nevents: 400
[2025-07-26 22:13:41] 2025-07-27 02:13:08,872 | INFO     | neventsw: 0
[2025-07-26 22:13:41] 2025-07-27 02:13:08,872 | INFO     | pid: 3808259
[2025-07-26 22:13:41] 2025-07-27 02:13:08,872 | INFO     | pgrp: 3808259
[2025-07-26 22:13:41] 2025-07-27 02:13:08,872 | INFO     | corecount: 12
[2025-07-26 22:13:41] 2025-07-27 02:13:08,872 | INFO     | event service: False
[2025-07-26 22:13:41] 2025-07-27 02:13:08,872 | INFO     | sizes: {0: 2397469, 5: 2397731, 11: 2397787, 5888: 2424432, 5889: 2424431, 5891: 2433485, 5892: 2433669, 5897: 2433863}
[2025-07-26 22:13:41] 2025-07-27 02:13:08,872 | INFO     | --------------------------------------------------
[2025-07-26 22:13:41] 2025-07-27 02:13:08,872 | INFO     | 
[2025-07-26 22:13:41] 2025-07-27 02:13:08,873 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 22:13:41] 2025-07-27 02:13:08,898 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,899 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,899 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,899 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,899 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,899 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,899 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,900 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,900 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,900 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,900 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,900 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,900 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,900 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,901 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,901 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,901 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,901 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 22:13:41] 2025-07-27 02:13:08,901 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,901 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 22:13:41] 2025-07-27 02:13:08,901 | INFO     | job 6744931676 has completed (purged errors)
[2025-07-26 22:13:41] 2025-07-27 02:13:08,902 | INFO     | overall cleanup function is called
[2025-07-26 22:13:41] 2025-07-27 02:13:09,911 | INFO     | --- collectZombieJob: --- 10, [3808259]
[2025-07-26 22:13:41] 2025-07-27 02:13:09,912 | INFO     | zombie collector waiting for pid 3808259
[2025-07-26 22:13:41] 2025-07-27 02:13:09,912 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 22:13:41] 2025-07-27 02:13:09,912 | INFO     | collected zombie processes
[2025-07-26 22:13:41] 2025-07-27 02:13:09,912 | INFO     | will attempt to kill all subprocesses of pid=3808259
[2025-07-26 22:13:41] 2025-07-27 02:13:10,112 | INFO     | process IDs to be killed: [3808259] (in reverse order)
[2025-07-26 22:13:41] 2025-07-27 02:13:10,191 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 22:13:41] 2025-07-27 02:13:10,191 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 22:13:41] 2025-07-27 02:13:10,197 | INFO     | did not find any defunct processes belonging to 3808259
[2025-07-26 22:13:41] 2025-07-27 02:13:10,203 | INFO     | did not find any defunct processes belonging to 3808259
[2025-07-26 22:13:41] 2025-07-27 02:13:10,203 | INFO     | ready for new job
[2025-07-26 22:13:41] 2025-07-27 02:13:10,203 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 22:13:41] 2025-07-27 02:13:10,205 | INFO     | ***************************************
[2025-07-26 22:13:41] 2025-07-27 02:13:10,205 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 22:13:41] 2025-07-27 02:13:10,205 | INFO     | ***************************************
[2025-07-26 22:13:41] 2025-07-27 02:13:10,205 | INFO     | 
[2025-07-26 22:13:41] 2025-07-27 02:13:10,207 | INFO     | architecture information:
[2025-07-26 22:13:41] 2025-07-27 02:13:10,207 | INFO     | executing command: cat /etc/os-release
[2025-07-26 22:13:41] 2025-07-27 02:13:10,221 | INFO     | cat /etc/os-release:
[2025-07-26 22:13:41] NAME="CentOS Linux"
[2025-07-26 22:13:41] VERSION="7 (Core)"
[2025-07-26 22:13:41] ID="centos"
[2025-07-26 22:13:41] ID_LIKE="rhel fedora"
[2025-07-26 22:13:41] VERSION_ID="7"
[2025-07-26 22:13:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 22:13:41] ANSI_COLOR="0;31"
[2025-07-26 22:13:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 22:13:41] HOME_URL="https://www.centos.org/"
[2025-07-26 22:13:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 22:13:41] 
[2025-07-26 22:13:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 22:13:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 22:13:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 22:13:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 22:13:41] 
[2025-07-26 22:13:41] 2025-07-27 02:13:10,222 | INFO     | ***************************************
[2025-07-26 22:13:41] 2025-07-27 02:13:10,724 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 22:13:41] 2025-07-27 02:13:10,751 | INFO     | sufficient remaining disk space (64711819264 B)
[2025-07-26 22:13:41] 2025-07-27 02:13:10,751 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 22:13:41] 2025-07-27 02:13:10,752 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 22:13:41] 2025-07-27 02:13:10,752 | INFO     | update_server=False
[2025-07-26 22:13:41] 2025-07-27 02:13:10,752 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 22:13:41] 2025-07-27 02:13:10,752 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 22:13:41] 2025-07-27 02:13:10,752 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 22:13:41] 2025-07-27 02:13:11,039 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 22:13:41] 2025-07-27 02:13:11,040 | INFO     | aborting loop
[2025-07-26 22:13:41] 2025-07-27 02:13:11,232 | INFO     | all payload control threads have been joined
[2025-07-26 22:13:41] 2025-07-27 02:13:11,672 | INFO     | all data control threads have been joined
[2025-07-26 22:13:41] 2025-07-27 02:13:11,704 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 22:13:41] 2025-07-27 02:13:11,757 | INFO     | [job] retrieve thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:11,758 | INFO     | [job] queue monitor thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:11,852 | INFO     | [payload] validate_post thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:11,867 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:11,891 | INFO     | all job control threads have been joined
[2025-07-26 22:13:41] 2025-07-27 02:13:12,042 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:12,044 | INFO     | [job] job monitor thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:12,175 | INFO     | [data] copytool_in thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:12,237 | INFO     | [payload] control thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:12,677 | INFO     | [data] control thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:12,856 | INFO     | [job] validate thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:12,871 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:12,896 | INFO     | [job] control thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:12,941 | INFO     | [payload] failed_post thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:13,045 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:13,709 | INFO     | [data] copytool_out thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:14,758 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 22:13:41] 2025-07-27 02:13:15,892 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140718963803968)>', '<ExcThread(monitor, started 140718479759104)>']
[2025-07-26 22:13:41] 2025-07-27 02:13:20,917 | INFO     | all workflow threads have been joined
[2025-07-26 22:13:41] 2025-07-27 02:13:20,918 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 22:13:41] 2025-07-27 02:13:20,918 | INFO     | traces error code: 0
[2025-07-26 22:13:41] 2025-07-27 02:13:20,918 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 22:13:41] 2025-07-27 02:13:41,227 | INFO     | PID=3801682 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 22:13:41] 2025-07-27 02:13:41,227 | INFO     | .. there are 7 such processes running
[2025-07-26 22:13:41] 2025-07-27 02:13:41,228 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 22:13:41] 2025-07-27 02:13:41,228 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 22:13:41] 2025-07-27 02:13:41,228 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 22:13:41] 2025-07-27 02:13:41,229 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 22:13:41] 2025-07-27 02:13:41,229 | INFO     | [monitor] control thread has ended
[2025-07-26 22:13:41] 2025-07-27 02:13:41,365 [wrapper] ==== pilot stdout END ====
[2025-07-26 22:13:41] 2025-07-27 02:13:41,368 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 22:13:41] 2025-07-27 02:13:41,372 [wrapper] pilotpid: 3801682
[2025-07-26 22:13:41] 2025-07-27 02:13:41,375 [wrapper] Pilot exit status: 0
[2025-07-26 22:13:41] 2025-07-27 02:13:41,387 [wrapper] pandaids: 6744931676
[2025-07-26 22:13:41] 2025-07-27 02:13:41,440 [wrapper] cleanup supervisor_pilot 3917087 3801683
[2025-07-26 22:13:41] 2025-07-27 02:13:41,443 [wrapper] Test setup, not cleaning
[2025-07-26 22:13:41] 2025-07-27 02:13:41,446 [wrapper] apfmon messages muted
[2025-07-26 22:13:41] 2025-07-27 02:13:41,449 [wrapper] ==== wrapper stdout END ====
[2025-07-26 22:13:41] 2025-07-27 02:13:41,452 [wrapper] ==== wrapper stderr END ====
[2025-07-26 22:13:41]  *** Error codes and diagnostics ***
[2025-07-26 22:13:41]     "exeErrorCode": 0,
[2025-07-26 22:13:41]     "exeErrorDiag": "",
[2025-07-26 22:13:41]     "pilotErrorCode": 0,
[2025-07-26 22:13:41]     "pilotErrorDiag": "",
[2025-07-26 22:13:41]  *** Listing of results directory ***
[2025-07-26 22:13:41] total 344956
[2025-07-26 22:13:41] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 16:51 pilot3.tar.gz
[2025-07-26 22:13:41] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 17:05 queuedata.json
[2025-07-26 22:13:41] -rwx------. 1 boincer umatlas     36292 Jul 24 17:06 runpilot2-wrapper.sh
[2025-07-26 22:13:41] -rw-r--r--. 1 boincer umatlas       100 Jul 26 20:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 22:13:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 20:34 run_atlas
[2025-07-26 22:13:41] -rw-r--r--. 1 boincer umatlas       105 Jul 26 20:34 job.xml
[2025-07-26 22:13:41] -rw-r--r--. 2 boincer umatlas 143230316 Jul 26 20:34 EVNT.45743347._000540.pool.root.1
[2025-07-26 22:13:41] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 20:34 start_atlas.sh
[2025-07-26 22:13:41] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 20:34 shared
[2025-07-26 22:13:41] -rw-r--r--. 2 boincer umatlas    542879 Jul 26 20:34 input.tar.gz
[2025-07-26 22:13:41] -rw-r--r--. 1 boincer umatlas         0 Jul 26 20:34 boinc_lockfile
[2025-07-26 22:13:41] -rw-r--r--. 1 boincer umatlas      2560 Jul 26 20:34 pandaJob.out
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas    980117 Jul 26 20:34 agis_schedconf.cvmfs.json
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas   1593052 Jul 26 20:34 agis_ddmendpoints.agis.ALL.json
[2025-07-26 22:13:41] drwx------. 4 boincer umatlas      4096 Jul 26 20:34 pilot3
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas 204244281 Jul 26 22:12 HITS.45743349._009882.pool.root.1
[2025-07-26 22:13:41] -rw-r--r--. 1 boincer umatlas      6610 Jul 26 22:12 init_data.xml
[2025-07-26 22:13:41] -rw-r--r--. 1 boincer umatlas       529 Jul 26 22:12 boinc_task_state.xml
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas      1038 Jul 26 22:12 memory_monitor_summary.json
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas    371069 Jul 26 22:13 log.45743349._009882.job.log.tgz.1
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas      7822 Jul 26 22:13 heartbeat.json
[2025-07-26 22:13:41] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 22:13 boinc_mmap_file
[2025-07-26 22:13:41] -rw-r--r--. 1 boincer umatlas        27 Jul 26 22:13 wrapper_checkpoint.txt
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas        95 Jul 26 22:13 pilot_heartbeat.json
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas       822 Jul 26 22:13 pilotlog.txt
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas    572650 Jul 26 22:13 log.45743349._009882.job.log.1
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas       357 Jul 26 22:13 output.list
[2025-07-26 22:13:41] -rw-r--r--. 1 boincer umatlas       620 Jul 26 22:13 runtime_log
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas    962560 Jul 26 22:13 result.tar.gz
[2025-07-26 22:13:41] -rw-r--r--. 1 boincer umatlas      8657 Jul 26 22:13 runtime_log.err
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas       654 Jul 26 22:13 pTILDm9JIz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmvmxKDmXxXpFn.diag
[2025-07-26 22:13:41] -rw-r--r--. 1 boincer umatlas     21675 Jul 26 22:13 stderr.txt
[2025-07-26 22:13:41] HITS file was successfully produced:
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas 204244281 Jul 26 22:12 shared/HITS.pool.root.1
[2025-07-26 22:13:41]  *** Contents of shared directory: ***
[2025-07-26 22:13:41] total 340828
[2025-07-26 22:13:41] -rw-r--r--. 2 boincer umatlas 143230316 Jul 26 20:34 ATLAS.root_0
[2025-07-26 22:13:41] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 20:34 start_atlas.sh
[2025-07-26 22:13:41] -rw-r--r--. 2 boincer umatlas    542879 Jul 26 20:34 input.tar.gz
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas 204244281 Jul 26 22:12 HITS.pool.root.1
[2025-07-26 22:13:41] -rw-------. 1 boincer umatlas    962560 Jul 26 22:13 result.tar.gz
22:13:42 (3797546): run_atlas exited; CPU time 62504.557922
22:13:42 (3797546): called boinc_finish(0)

</stderr_txt>
]]>

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