Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-26 20:03:26 (604185): Detected: vboxwrapper 26206
2025-07-26 20:03:26 (604185): Detected: BOINC client v7.24.1
2025-07-26 20:03:26 (604185): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-07-26 20:03:26 (604185): Successfully copied 'init_data.xml' to the shared directory.
2025-07-26 20:03:26 (604185): Create VM. (boinc_c148a43195175fd4, slot#1)
2025-07-26 20:03:27 (604185): Setting Memory Size for VM. (4600MB)
2025-07-26 20:03:27 (604185): Setting CPU Count for VM. (6)
2025-07-26 20:03:27 (604185): Setting Chipset Options for VM.
2025-07-26 20:03:27 (604185): Setting Graphics Controller Options for VM.
2025-07-26 20:03:27 (604185): Setting Boot Options for VM.
2025-07-26 20:03:27 (604185): Setting Network Configuration for NAT.
2025-07-26 20:03:27 (604185): Enabling VM Network Access.
2025-07-26 20:03:27 (604185): Disabling USB Support for VM.
2025-07-26 20:03:27 (604185): Disabling COM Port Support for VM.
2025-07-26 20:03:27 (604185): Disabling LPT Port Support for VM.
2025-07-26 20:03:27 (604185): Disabling Audio Support for VM.
2025-07-26 20:03:27 (604185): Disabling Clipboard Support for VM.
2025-07-26 20:03:27 (604185): Disabling Drag and Drop Support for VM.
2025-07-26 20:03:27 (604185): Adding storage controller(s) to VM.
2025-07-26 20:03:28 (604185): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-26 20:03:29 (604185): Adding VirtualBox Guest Additions to VM.
2025-07-26 20:03:29 (604185): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-26 20:03:29 (604185): forwarding host port 34295 to guest port 80
2025-07-26 20:03:29 (604185): Enabling remote desktop for VM.
2025-07-26 20:03:29 (604185): Required extension pack not installed, remote desktop not enabled.
2025-07-26 20:03:29 (604185): Enabling shared directory for VM.
2025-07-26 20:03:29 (604185): Starting VM using VBoxManage interface. (boinc_c148a43195175fd4, slot#1)
2025-07-26 20:03:31 (604185): Successfully started VM. (PID = '605415')
2025-07-26 20:03:31 (604185): Reporting VM Process ID to BOINC.
2025-07-26 20:03:31 (604185): Guest Log: BIOS: VirtualBox 7.0.16
2025-07-26 20:03:31 (604185): Guest Log: CPUID EDX: 0x178bfbff
2025-07-26 20:03:31 (604185): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-26 20:03:31 (604185): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-26 20:03:31 (604185): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-26 20:03:31 (604185): Detected: Web Application Enabled (http://localhost:34295)
2025-07-26 20:03:31 (604185): Preference change detected
2025-07-26 20:03:31 (604185): Setting CPU throttle for VM. (20%)
2025-07-26 20:03:31 (604185): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 20:03:33 (604185): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-26 20:03:33 (604185): Guest Log: BIOS: Booting from Hard Disk...
2025-07-26 20:03:38 (604185): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-26 20:03:38 (604185): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-26 20:03:38 (604185): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-26 20:03:47 (604185): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-26 20:03:47 (604185): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-26 20:03:59 (604185): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-26 20:03:59 (604185): Guest Log: 00:00:00.000077 main     Log opened 2025-07-27T03:03:59.771288000Z
2025-07-26 20:03:59 (604185): Guest Log: 00:00:00.000137 main     OS Product: Linux
2025-07-26 20:03:59 (604185): Guest Log: 00:00:00.000146 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-26 20:03:59 (604185): Guest Log: 00:00:00.000154 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-26 20:03:59 (604185): Guest Log: 00:00:00.000161 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-26 20:03:59 (604185): Guest Log: 00:00:00.000161 main     Process ID: 1336
2025-07-26 20:03:59 (604185): Guest Log: 00:00:00.000161 main     Package type: LINUX_64BITS_GENERIC
2025-07-26 20:03:59 (604185): Guest Log: 00:00:00.000611 main     5.2.32 r132073 started. Verbose level = 0
2025-07-26 20:04:00 (604185): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-26 20:04:00 (604185): Guest Log: [INFO] Mounting shared directory
2025-07-26 20:04:00 (604185): Guest Log: [INFO] Checking for init_data.xml
2025-07-26 20:04:03 (604185): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-26 20:04:03 (604185): Guest Log: [INFO] Detected branch: prod
2025-07-26 20:04:03 (604185): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-26 20:04:03 (604185): Guest Log: Copying input files
2025-07-26 20:04:05 (604185): Guest Log: Copied input files into RunAtlas.
2025-07-26 20:04:05 (604185): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-26 20:04:05 (604185): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-26 20:04:05 (604185): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-26 20:04:05 (604185): Guest Log: Further information can be found at the LHC@home message board.
2025-07-26 20:04:13 (604185): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-26 20:04:13 (604185): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-26 20:04:13 (604185): Guest Log: 2.6.3.0 1629 0 32192 148797 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-07-26 20:04:14 (604185): Guest Log: copied the webapp to /var/www
2025-07-26 20:04:14 (604185): Guest Log: ATHENA_PROC_NUMBER=6
2025-07-26 20:04:14 (604185): Guest Log: ATHENA_CORE_NUMBER=6
2025-07-26 20:04:14 (604185): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-26 20:04:14 (604185): Guest Log:  *** Starting ATLAS job. (PandaID=6745354921 taskID=45743349) ***
2025-07-26 21:31:28 (604185): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 22:01:55 (604185): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 22:02:03 (604185): Guest Log: 01:31:33.179382 timesync vgsvcTimeSyncWorker: Radical host time change: 1 837 188 000 000ns (HostNow=1 753 592 522 505 000 000 ns HostLast=1 753 590 685 317 000 000 ns)
2025-07-26 22:08:53 (604185): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 22:48:46 (604185): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 22:48:49 (604185): Guest Log: 01:38:45.228336 timesync vgsvcTimeSyncWorker: Radical host time change: 2 402 589 000 000ns (HostNow=1 753 595 328 907 000 000 ns HostLast=1 753 592 926 318 000 000 ns)
2025-07-26 22:48:59 (604185): Guest Log: 01:38:55.273846 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 384 398 218 000ns (GuestNow=1 753 595 339 062 906 000 ns GuestLast=1 753 592 954 664 688 000 ns fSetTimeLastLoop=true )
2025-07-26 22:52:53 (604185): Status Report: Elapsed Time: '6000.000000'
2025-07-26 22:52:53 (604185): Status Report: CPU Time: '5162.550000'
2025-07-26 23:05:15 (604185): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 23:08:19 (604185): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 23:14:30 (604185): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 23:19:35 (604185): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 23:26:32 (604185): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 23:29:33 (604185): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 23:31:30 (604185): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 23:35:20 (604185): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 23:37:24 (604185): VM state change detected. (old = 'running', new = 'paused')
2025-07-26 23:53:09 (604185): VM state change detected. (old = 'paused', new = 'running')
2025-07-26 23:53:40 (604185): VM state change detected. (old = 'running', new = 'paused')
2025-07-27 00:10:13 (604185): VM state change detected. (old = 'paused', new = 'running')
2025-07-27 01:19:18 (604185): Status Report: Elapsed Time: '12000.000000'
2025-07-27 01:19:18 (604185): Status Report: CPU Time: '12000.760000'
2025-07-27 02:12:33 (604185): Guest Log:  *** Job finished ***
2025-07-27 02:12:33 (604185): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:31,633 | INFO     | [job] control thread has finished
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:31,961 | INFO     | [data] copytool_out thread has finished
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:33,758 | INFO     | [data] queue_monitor thread has finished
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:34,654 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140283732944704)>', '<ExcThread(monitor, started 140283161343744)>']
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:35,390 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:35,390 | INFO     | [monitor] control thread has ended
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:39,673 | INFO     | all workflow threads have been joined
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:39,673 | INFO     | end of generic workflow (traces error code: 0)
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:39,673 | INFO     | traces error code: 0
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:39,673 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:40,006 [wrapper] ==== pilot stdout END ====
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:40,008 [wrapper] ==== wrapper stdout RESUME ====
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:40,010 [wrapper] pilotpid: 5947
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:40,012 [wrapper] Pilot exit status: 0
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:40,059 [wrapper] pandaids: 6745354921
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:40,075 [wrapper] cleanup supervisor_pilot 11537 5948
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:40,079 [wrapper] Test setup, not cleaning
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:40,084 [wrapper] apfmon messages muted
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:40,088 [wrapper] ==== wrapper stdout END ====
2025-07-27 02:12:33 (604185): Guest Log: 2025-07-27 09:01:40,091 [wrapper] ==== wrapper stderr END ====
2025-07-27 02:12:33 (604185): Guest Log:  *** Error codes and diagnostics ***
2025-07-27 02:12:33 (604185): Guest Log:     "exeErrorCode": 0,
2025-07-27 02:12:33 (604185): Guest Log:     "exeErrorDiag": "",
2025-07-27 02:12:33 (604185): Guest Log:     "pilotErrorCode": 0,
2025-07-27 02:12:33 (604185): Guest Log:     "pilotErrorDiag": "",
2025-07-27 02:12:33 (604185): Guest Log:  *** Listing of results directory ***
2025-07-27 02:12:33 (604185): Guest Log: total 208912
2025-07-27 02:12:33 (604185): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 26 18:40 pilot3.tar.gz
2025-07-27 02:12:33 (604185): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 26 19:15 runpilot2-wrapper.sh
2025-07-27 02:12:33 (604185): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 26 19:15 queuedata.json
2025-07-27 02:12:33 (604185): Guest Log: -rw-r--r--. 1 atlas atlas    542895 Jul 27 03:04 input.tar.gz
2025-07-27 02:12:33 (604185): Guest Log: -rw-r--r--. 1 atlas atlas     15095 Jul 27 03:04 start_atlas.sh
2025-07-27 02:12:33 (604185): Guest Log: -rw-r--r--. 1 atlas atlas      9704 Jul 27 03:04 init_data.xml
2025-07-27 02:12:33 (604185): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 27 03:04 EVNT.45743347._002433.pool.root.1 -> /data/./ATLAS.root_0
2025-07-27 02:12:33 (604185): Guest Log: -rw-r--r--. 1 atlas atlas      2563 Jul 27 03:04 pandaJob.out
2025-07-27 02:12:33 (604185): Guest Log: -rw-------. 1 atlas atlas    980117 Jul 27 03:04 agis_schedconf.cvmfs.json
2025-07-27 02:12:33 (604185): Guest Log: drwx------. 4 atlas atlas      4096 Jul 27 03:05 pilot3
2025-07-27 02:12:33 (604185): Guest Log: -rw-------. 1 atlas atlas 207840159 Jul 27 09:00 HITS.45743349._043040.pool.root.1
2025-07-27 02:12:33 (604185): Guest Log: -rw-------. 1 atlas atlas        97 Jul 27 09:00 pilot_heartbeat.json
2025-07-27 02:12:33 (604185): Guest Log: -rw-------. 1 atlas atlas      1029 Jul 27 09:01 memory_monitor_summary.json
2025-07-27 02:12:33 (604185): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 27 09:01 agis_ddmendpoints.agis.ALL.json
2025-07-27 02:12:33 (604185): Guest Log: -rw-------. 1 atlas atlas    331366 Jul 27 09:01 log.45743349._043040.job.log.tgz.1
2025-07-27 02:12:33 (604185): Guest Log: -rw-------. 1 atlas atlas      7796 Jul 27 09:01 heartbeat.json
2025-07-27 02:12:33 (604185): Guest Log: -rw-------. 1 atlas atlas      4540 Jul 27 09:01 pilotlog.txt
2025-07-27 02:12:33 (604185): Guest Log: -rw-------. 1 atlas atlas    804898 Jul 27 09:01 log.45743349._043040.job.log.1
2025-07-27 02:12:33 (604185): Guest Log: -rw-------. 1 atlas atlas       357 Jul 27 09:01 output.list
2025-07-27 02:12:33 (604185): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 27 09:01 runtime_log
2025-07-27 02:12:33 (604185): Guest Log: -rw-------. 1 atlas atlas   1157120 Jul 27 09:01 result.tar.gz
2025-07-27 02:12:33 (604185): Guest Log: -rw-r--r--. 1 atlas atlas      8633 Jul 27 09:01 runtime_log.err
2025-07-27 02:12:33 (604185): Guest Log: -rw-------. 1 atlas atlas       669 Jul 27 09:01 HaaNDmRXzz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmDJ1KDmoQNeOn.diag
2025-07-27 02:12:33 (604185): Guest Log: Looking for outputfile HITS.45743349._043040.pool.root.1
2025-07-27 02:12:33 (604185): Guest Log: HITS file was successfully produced
2025-07-27 02:12:33 (604185): Guest Log: -rw-------. 1 atlas atlas 207840159 Jul 27 09:00 /home/atlas/RunAtlas/HITS.45743349._043040.pool.root.1
2025-07-27 02:12:33 (604185): Guest Log: Successfully finished the ATLAS job!
2025-07-27 02:12:33 (604185): Guest Log: Copying the results back to the shared directory!
2025-07-27 02:12:33 (604185): Guest Log:  *** Contents of shared directory: ***
2025-07-27 02:12:33 (604185): Guest Log: total 143128
2025-07-27 02:12:33 (604185): Guest Log: -rw-r--r--. 1 root root 144822280 Jul 27 03:03 ATLAS.root_0
2025-07-27 02:12:33 (604185): Guest Log: -rw-r--r--. 1 root root      9704 Jul 27 03:03 init_data.xml
2025-07-27 02:12:33 (604185): Guest Log: -rw-r--r--. 1 root root    542895 Jul 27 03:03 input.tar.gz
2025-07-27 02:12:33 (604185): Guest Log: -rw-r--r--. 1 root root   1157120 Jul 27  2025 result.tar.gz
2025-07-27 02:12:33 (604185): Guest Log: -rw-r--r--. 1 root root     15095 Jul 27 03:03 start_atlas.sh
2025-07-27 02:12:33 (604185): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-27 02:12:33 (604185): VM Completion File Detected.
2025-07-27 02:12:33 (604185): Powering off VM.
2025-07-27 02:12:34 (604185): Successfully stopped VM.
2025-07-27 02:12:34 (604185): Deregistering VM. (boinc_c148a43195175fd4, slot#1)
2025-07-27 02:12:34 (604185): Removing network bandwidth throttle group from VM.
2025-07-27 02:12:34 (604185): Removing VM from VirtualBox.
02:12:39 (604185): called boinc_finish(0)

</stderr_txt>
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