Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:17:06 (2113167): wrapper (7.7.26015): starting
15:17:06 (2113167): wrapper: running run_atlas (--nthreads 6)
[2025-07-27 15:17:06] Arguments: --nthreads 6
[2025-07-27 15:17:06] Threads: 6
[2025-07-27 15:17:06] Checking for CVMFS
[2025-07-27 15:17:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:17:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:17:06] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:17:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:17:06] 2.11.5.0 3914476 3820 80676 148803 3 57 29362168 52428801 929 130560 2 6581658 99.995 141003 15 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-27 15:17:06] CVMFS is ok
[2025-07-27 15:17:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:17:06] Checking for apptainer binary...
[2025-07-27 15:17:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:17:06] Running /usr/bin/apptainer --version
[2025-07-27 15:17:06] apptainer version 1.3.6-1.el9
[2025-07-27 15:17:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:17:06] testio002
[2025-07-27 15:17:06] apptainer works
[2025-07-27 15:17:06] Set ATHENA_PROC_NUMBER=6
[2025-07-27 15:17:06] Set ATHENA_CORE_NUMBER=6
[2025-07-27 15:17:06] Starting ATLAS job with PandaID=6745262245
[2025-07-27 15:17:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:34:38 (2343): wrapper (7.7.26015): starting
15:34:38 (2343): wrapper: running run_atlas (--nthreads 6)
[2025-07-27 15:34:38] Arguments: --nthreads 6
[2025-07-27 15:34:38] Threads: 6
[2025-07-27 15:34:38] This job has been restarted, cleaning up previous attempt
[2025-07-27 15:34:38] Checking for CVMFS
[2025-07-27 15:34:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:35:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:35:16] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:35:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:35:16] 2.11.5.0 2646 0 31064 148803 3 1 29366669 52428801 0 130560 0 0 100.000 2 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-07-27 15:35:16] CVMFS is ok
[2025-07-27 15:35:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:35:16] Checking for apptainer binary...
[2025-07-27 15:35:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 15:35:16] Running /usr/bin/apptainer --version
[2025-07-27 15:35:16] apptainer version 1.3.6-1.el9
[2025-07-27 15:35:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:35:17] testio002
[2025-07-27 15:35:17] apptainer works
[2025-07-27 15:35:17] Set ATHENA_PROC_NUMBER=6
[2025-07-27 15:35:17] Set ATHENA_CORE_NUMBER=6
[2025-07-27 15:35:17] Starting ATLAS job with PandaID=6745262245
[2025-07-27 15:35:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:47:12]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:47:12] 2025-07-27 07:45:59,756 | INFO     | PID=10524 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 16:47:12] 2025-07-27 07:45:59,756 | INFO     | .. there are 2 such processes running
[2025-07-27 16:47:12] 2025-07-27 07:46:00,997 | INFO     | monitor loop #320: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:00,997 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:03,499 | INFO     | monitor loop #321: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:03,499 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:06,001 | INFO     | monitor loop #322: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:06,001 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:08,503 | INFO     | monitor loop #323: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:08,503 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:11,006 | INFO     | monitor loop #324: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:11,006 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:13,508 | INFO     | monitor loop #325: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:13,508 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:16,011 | INFO     | monitor loop #326: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:16,011 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:18,514 | INFO     | monitor loop #327: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:18,514 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:21,017 | INFO     | monitor loop #328: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:21,017 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:21,860 | INFO     | PID=10524 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 16:47:12] 2025-07-27 07:46:21,860 | INFO     | .. there are 2 such processes running
[2025-07-27 16:47:12] 2025-07-27 07:46:23,520 | INFO     | monitor loop #329: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:23,520 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:26,023 | INFO     | monitor loop #330: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:26,023 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:28,526 | INFO     | monitor loop #331: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:28,526 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:31,028 | INFO     | monitor loop #332: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:31,029 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:33,531 | INFO     | monitor loop #333: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:33,532 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:36,034 | INFO     | monitor loop #334: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:36,035 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:38,537 | INFO     | monitor loop #335: job 0:6745262245 is in state 'finished'
[2025-07-27 16:47:12] 2025-07-27 07:46:38,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:47:12] 2025-07-27 07:46:39,799 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 16:47:12] 2025-07-27 07:46:39,800 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4400.1746875
[2025-07-27 16:47:12] 2025-07-27 07:46:39,801 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6745262245/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:47:12] 2025-07-27 07:46:39,801 | INFO     | extracted standard info from prmon json
[2025-07-27 16:47:12] 2025-07-27 07:46:39,801 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:47:12] 2025-07-27 07:46:39,801 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:47:12] 2025-07-27 07:46:39,801 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:47:12] 2025-07-27 07:46:39,801 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | sum of square deviations: 70364110.0
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | sum of deviations: 8303164083.999998
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | mean x: 1753600349.0
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | mean y: 2401033.8032786883
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | -- intersect: -206927402178.46875
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | intersect: -206927402178.46875
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | chi2: 1.501246989330166
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | -- intersect: -206927402178.46875
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | current memory leak: 118.00 B/s (using 61 data points, chi2=1.50)
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | could have reported an average CPU frequency of 4366 MHz (6 samples)
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | ..............................
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | . Timing measurements:
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | . get job = 0 s
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | . initial setup = 0 s
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | . payload setup = 1 s
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | . stage-in = 0 s
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | . payload execution = 4110 s
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | . stage-out = 0 s
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | . log creation = 0 s
[2025-07-27 16:47:12] 2025-07-27 07:46:39,802 | INFO     | ..............................
[2025-07-27 16:47:12] 2025-07-27 07:46:39,829 | INFO     | 
[2025-07-27 16:47:12] 2025-07-27 07:46:39,829 | INFO     | job summary report
[2025-07-27 16:47:12] 2025-07-27 07:46:39,829 | INFO     | --------------------------------------------------
[2025-07-27 16:47:12] 2025-07-27 07:46:39,829 | INFO     | PanDA job id: 6745262245
[2025-07-27 16:47:12] 2025-07-27 07:46:39,829 | INFO     | task id: 45743349
[2025-07-27 16:47:12] 2025-07-27 07:46:39,829 | INFO     | errors: (none)
[2025-07-27 16:47:12] 2025-07-27 07:46:39,829 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:47:12] 2025-07-27 07:46:39,829 | INFO     | pilot state: finished 
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | transexitcode: 0
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | exeerrorcode: 0
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | exeerrordiag: 
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | exitcode: 0
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | exitmsg: OK
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | cpuconsumptiontime: 20482 s
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | nevents: 400
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | neventsw: 0
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | pid: 23691
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | pgrp: 23691
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | corecount: 6
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | event service: False
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | sizes: {0: 2396647, 1: 2397503, 2: 2397765, 11: 2397793, 4116: 2423792, 4117: 2432790, 4119: 2432974, 4190: 2433168}
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | --------------------------------------------------
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | 
[2025-07-27 16:47:12] 2025-07-27 07:46:39,830 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-07-27 16:47:12] 2025-07-27 07:46:39,836 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,836 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,836 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,836 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,836 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,836 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,836 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,836 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,836 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,836 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,836 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,836 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,836 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,837 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,837 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,837 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,837 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,837 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:47:12] 2025-07-27 07:46:39,837 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,837 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:47:12] 2025-07-27 07:46:39,837 | INFO     | job 6745262245 has completed (purged errors)
[2025-07-27 16:47:12] 2025-07-27 07:46:39,837 | INFO     | overall cleanup function is called
[2025-07-27 16:47:12] 2025-07-27 07:46:40,839 | INFO     | --- collectZombieJob: --- 10, [23691]
[2025-07-27 16:47:12] 2025-07-27 07:46:40,839 | INFO     | zombie collector waiting for pid 23691
[2025-07-27 16:47:12] 2025-07-27 07:46:40,839 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:47:12] 2025-07-27 07:46:40,839 | INFO     | collected zombie processes
[2025-07-27 16:47:12] 2025-07-27 07:46:40,839 | INFO     | will attempt to kill all subprocesses of pid=23691
[2025-07-27 16:47:12] 2025-07-27 07:46:40,870 | INFO     | process IDs to be killed: [23691] (in reverse order)
[2025-07-27 16:47:12] 2025-07-27 07:46:40,882 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:47:12] 2025-07-27 07:46:40,882 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:47:12] 2025-07-27 07:46:40,883 | INFO     | did not find any defunct processes belonging to 23691
[2025-07-27 16:47:12] 2025-07-27 07:46:40,884 | INFO     | did not find any defunct processes belonging to 23691
[2025-07-27 16:47:12] 2025-07-27 07:46:40,884 | INFO     | ready for new job
[2025-07-27 16:47:12] 2025-07-27 07:46:40,884 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:47:12] 2025-07-27 07:46:40,885 | INFO     | ***************************************
[2025-07-27 16:47:12] 2025-07-27 07:46:40,885 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:47:12] 2025-07-27 07:46:40,885 | INFO     | ***************************************
[2025-07-27 16:47:12] 2025-07-27 07:46:40,885 | INFO     | 
[2025-07-27 16:47:12] 2025-07-27 07:46:40,885 | INFO     | architecture information:
[2025-07-27 16:47:12] 2025-07-27 07:46:40,885 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:47:12] 2025-07-27 07:46:40,889 | INFO     | cat /etc/os-release:
[2025-07-27 16:47:12] NAME="CentOS Linux"
[2025-07-27 16:47:12] VERSION="7 (Core)"
[2025-07-27 16:47:12] ID="centos"
[2025-07-27 16:47:12] ID_LIKE="rhel fedora"
[2025-07-27 16:47:12] VERSION_ID="7"
[2025-07-27 16:47:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:47:12] ANSI_COLOR="0;31"
[2025-07-27 16:47:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:47:12] HOME_URL="https://www.centos.org/"
[2025-07-27 16:47:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:47:12] 
[2025-07-27 16:47:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:47:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:47:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:47:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:47:12] 
[2025-07-27 16:47:12] 2025-07-27 07:46:40,889 | INFO     | ***************************************
[2025-07-27 16:47:12] 2025-07-27 07:46:41,391 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-07-27 16:47:12] 2025-07-27 07:46:41,396 | INFO     | sufficient remaining disk space (315523858432 B)
[2025-07-27 16:47:12] 2025-07-27 07:46:41,396 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:47:12] 2025-07-27 07:46:41,396 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:47:12] 2025-07-27 07:46:41,396 | INFO     | update_server=False
[2025-07-27 16:47:12] 2025-07-27 07:46:41,396 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:47:12] 2025-07-27 07:46:41,396 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:47:12] 2025-07-27 07:46:41,546 | INFO     | all data control threads have been joined
[2025-07-27 16:47:12] 2025-07-27 07:46:42,045 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:47:12] 2025-07-27 07:46:42,045 | INFO     | aborting loop
[2025-07-27 16:47:12] 2025-07-27 07:46:42,348 | INFO     | all payload control threads have been joined
[2025-07-27 16:47:12] 2025-07-27 07:46:42,396 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:42,401 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:42,444 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:47:12] 2025-07-27 07:46:42,551 | INFO     | [data] control thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:42,558 | INFO     | all job control threads have been joined
[2025-07-27 16:47:12] 2025-07-27 07:46:42,843 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:42,872 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:43,050 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:43,152 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:47:12] 2025-07-27 07:46:43,172 | INFO     | [job] validate thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:43,235 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:43,353 | INFO     | [payload] control thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:43,458 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:43,499 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:43,563 | INFO     | [job] control thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:43,858 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:44,449 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:47,157 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:51,666 | INFO     | job.realtimelogging is not enabled
[2025-07-27 16:47:12] 2025-07-27 07:46:52,671 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:47:12] 2025-07-27 07:46:53,108 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140589194704704)>', '<ExcThread(monitor, started 140588573783808)>']
[2025-07-27 16:47:12] 2025-07-27 07:46:58,133 | INFO     | all workflow threads have been joined
[2025-07-27 16:47:12] 2025-07-27 07:46:58,133 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:47:12] 2025-07-27 07:46:58,134 | INFO     | traces error code: 0
[2025-07-27 16:47:12] 2025-07-27 07:46:58,134 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:47:12] 2025-07-27 07:47:12,003 | INFO     | PID=10524 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-27 16:47:12] 2025-07-27 07:47:12,003 | INFO     | .. there are 2 such processes running
[2025-07-27 16:47:12] 2025-07-27 07:47:12,004 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:47:12] 2025-07-27 07:47:12,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:47:12] 2025-07-27 07:47:12,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:47:12] 2025-07-27 07:47:12,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:47:12] 2025-07-27 07:47:12,004 | INFO     | [monitor] control thread has ended
[2025-07-27 16:47:12] 2025-07-27 07:47:12,036 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:47:12] 2025-07-27 07:47:12,037 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:47:12] 2025-07-27 07:47:12,038 [wrapper] pilotpid: 10524
[2025-07-27 16:47:12] 2025-07-27 07:47:12,038 [wrapper] Pilot exit status: 0
[2025-07-27 16:47:12] 2025-07-27 07:47:12,042 [wrapper] pandaids: 6745262245 6745262245
[2025-07-27 16:47:12] 2025-07-27 07:47:12,048 [wrapper] cleanup supervisor_pilot   41620 10526
[2025-07-27 16:47:12] 2025-07-27 07:47:12,049 [wrapper] Test setup, not cleaning
[2025-07-27 16:47:12] 2025-07-27 07:47:12,050 [wrapper] apfmon messages muted
[2025-07-27 16:47:12] 2025-07-27 07:47:12,050 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:47:12] 2025-07-27 07:47:12,051 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:47:12]  *** Error codes and diagnostics ***
[2025-07-27 16:47:12]     "exeErrorCode": 0,
[2025-07-27 16:47:12]     "exeErrorDiag": "",
[2025-07-27 16:47:12]     "pilotErrorCode": 0,
[2025-07-27 16:47:12]     "pilotErrorDiag": "",
[2025-07-27 16:47:12]  *** Listing of results directory ***
[2025-07-27 16:47:12] total 499988
[2025-07-27 16:47:12] drwx------. 4 boinc boinc      4096 Jun 17 19:04 pilot3
[2025-07-27 16:47:12] -rw-r--r--. 1 boinc boinc    530466 Jul 27 00:50 pilot3.tar.gz
[2025-07-27 16:47:12] -rwx------. 1 boinc boinc     36292 Jul 27 01:17 runpilot2-wrapper.sh
[2025-07-27 16:47:12] -rw-r--r--. 1 boinc boinc      5112 Jul 27 01:17 queuedata.json
[2025-07-27 16:47:12] -rw-r--r--. 1 boinc boinc       100 Jul 27 15:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:47:12] -rwxr-xr-x. 1 boinc boinc      7986 Jul 27 15:17 run_atlas
[2025-07-27 16:47:12] -rw-r--r--. 1 boinc boinc       105 Jul 27 15:17 job.xml
[2025-07-27 16:47:12] -rw-r--r--. 2 boinc boinc     15095 Jul 27 15:17 start_atlas.sh
[2025-07-27 16:47:12] drwxrwx--x. 2 boinc boinc        68 Jul 27 15:17 shared
[2025-07-27 16:47:12] -rw-r--r--. 2 boinc boinc    542892 Jul 27 15:17 input.tar.gz
[2025-07-27 16:47:12] -rw-r--r--. 3 boinc boinc 149422331 Jul 27 15:17 EVNT.45743347._002329.pool.root.1
[2025-07-27 16:47:12] -rw-r--r--. 3 boinc boinc 149422331 Jul 27 15:17 ATLAS.root_0
[2025-07-27 16:47:12] -rw-r--r--. 1 boinc boinc         0 Jul 27 15:17 boinc_lockfile
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc   1593052 Jul 27 15:17 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:47:12] -rw-r--r--. 1 boinc boinc      9633 Jul 27 15:34 init_data.xml
[2025-07-27 16:47:12] -rw-r--r--. 1 boinc boinc      2563 Jul 27 15:35 pandaJob.out
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc    980125 Jul 27 15:36 agis_schedconf.cvmfs.json
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc 207868473 Jul 27 16:45 HITS.45743349._040751.pool.root.1
[2025-07-27 16:47:12] -rw-r--r--. 1 boinc boinc       529 Jul 27 16:45 boinc_task_state.xml
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc      1033 Jul 27 16:45 memory_monitor_summary.json
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc    262471 Jul 27 16:45 log.45743349._040751.job.log.tgz.1
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc      7814 Jul 27 16:46 heartbeat.json
[2025-07-27 16:47:12] -rw-r--r--. 1 boinc boinc      8192 Jul 27 16:46 boinc_mmap_file
[2025-07-27 16:47:12] -rw-r--r--. 1 boinc boinc        27 Jul 27 16:46 wrapper_checkpoint.txt
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc        95 Jul 27 16:47 pilot_heartbeat.json
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc       820 Jul 27 16:47 pilotlog.txt
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc    439331 Jul 27 16:47 log.45743349._040751.job.log.1
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc       357 Jul 27 16:47 output.list
[2025-07-27 16:47:12] -rw-r--r--. 1 boinc boinc       620 Jul 27 16:47 runtime_log
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc    716800 Jul 27 16:47 result.tar.gz
[2025-07-27 16:47:12] -rw-r--r--. 1 boinc boinc      8703 Jul 27 16:47 runtime_log.err
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc       772 Jul 27 16:47 qanKDmllwz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfYSLDmgOVKMo.diag
[2025-07-27 16:47:12] -rw-r--r--. 1 boinc boinc     23955 Jul 27 16:47 stderr.txt
[2025-07-27 16:47:12] HITS file was successfully produced:
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc 207868473 Jul 27 16:45 shared/HITS.pool.root.1
[2025-07-27 16:47:12]  *** Contents of shared directory: ***
[2025-07-27 16:47:12] total 350172
[2025-07-27 16:47:12] -rw-r--r--. 2 boinc boinc     15095 Jul 27 15:17 start_atlas.sh
[2025-07-27 16:47:12] -rw-r--r--. 2 boinc boinc    542892 Jul 27 15:17 input.tar.gz
[2025-07-27 16:47:12] -rw-r--r--. 3 boinc boinc 149422331 Jul 27 15:17 ATLAS.root_0
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc 207868473 Jul 27 16:45 HITS.pool.root.1
[2025-07-27 16:47:12] -rw-------. 1 boinc boinc    716800 Jul 27 16:47 result.tar.gz
16:47:13 (2343): run_atlas exited; CPU time 20503.720944
16:47:13 (2343): called boinc_finish(0)

</stderr_txt>
]]>

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