Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:40:14 (3398359): wrapper (7.7.26015): starting
19:40:14 (3398359): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 19:40:14] Arguments: --nthreads 8
[2025-07-26 19:40:14] Threads: 8
[2025-07-26 19:40:14] Checking for CVMFS
[2025-07-26 19:40:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 19:40:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 19:40:16] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 19:40:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 19:40:19] 2.12.6.0 3074763 99084 707592 148793 1 95 27404751 32935936 26319 16776704 2 194060689 99.662 223946876 6960 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 19:40:19] CVMFS is ok
[2025-07-26 19:40:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 19:40:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 19:40:19] Further information can be found at the LHC@home message board.
[2025-07-26 19:40:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 19:40:19] Checking for apptainer binary...
[2025-07-26 19:40:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 19:40:19] Running /usr/bin/apptainer --version
[2025-07-26 19:40:19] apptainer version 1.4.1-1.el9
[2025-07-26 19:40:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 19:40:21] c6-12-25-1.aglt2.org
[2025-07-26 19:40:21] apptainer works
[2025-07-26 19:40:21] Set ATHENA_PROC_NUMBER=8
[2025-07-26 19:40:21] Set ATHENA_CORE_NUMBER=8
[2025-07-26 19:40:21] Starting ATLAS job with PandaID=6745352251
[2025-07-26 19:40:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:20:13 (3398359): BOINC client no longer exists - exiting
07:20:13 (3398359): timer handler: client dead, exiting
07:30:53 (1151293): wrapper (7.7.26015): starting
07:30:53 (1151293): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 07:30:53] Arguments: --nthreads 8
[2025-07-27 07:30:53] Threads: 8
[2025-07-27 07:30:53] This job has been restarted, cleaning up previous attempt
[2025-07-27 07:30:53] Checking for CVMFS
[2025-07-27 07:30:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 07:30:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 07:30:55] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 07:30:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 07:30:57] 2.12.6.0 3074763 99795 719356 148811 1 335 32545496 32935936 25544 16776704 2 195059785 99.662 225382990 6975 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 07:30:57] CVMFS is ok
[2025-07-27 07:30:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 07:30:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 07:30:57] Further information can be found at the LHC@home message board.
[2025-07-27 07:30:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 07:30:57] Checking for apptainer binary...
[2025-07-27 07:30:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 07:30:57] Running /usr/bin/apptainer --version
[2025-07-27 07:30:58] apptainer version 1.4.1-1.el9
[2025-07-27 07:30:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 07:30:59] c6-12-25-1.aglt2.org
[2025-07-27 07:30:59] apptainer works
[2025-07-27 07:30:59] Set ATHENA_PROC_NUMBER=8
[2025-07-27 07:30:59] Set ATHENA_CORE_NUMBER=8
[2025-07-27 07:30:59] Starting ATLAS job with PandaID=6745352251
[2025-07-27 07:30:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:10:31]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:10:31] 2025-07-27 22:09:39,815 | INFO     | monitor loop #1217: job 0:6745352251 is in state 'finished'
[2025-07-27 18:10:31] 2025-07-27 22:09:39,815 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:10:31] 2025-07-27 22:09:42,325 | INFO     | monitor loop #1218: job 0:6745352251 is in state 'finished'
[2025-07-27 18:10:31] 2025-07-27 22:09:42,326 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:10:31] 2025-07-27 22:09:42,915 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 18:10:31] 2025-07-27 22:09:43,117 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 999.9994895833332
[2025-07-27 18:10:31] 2025-07-27 22:09:43,334 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745352251/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:10:31] 2025-07-27 22:09:43,357 | INFO     | extracted standard info from prmon json
[2025-07-27 18:10:31] 2025-07-27 22:09:43,357 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:10:31] 2025-07-27 22:09:43,358 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:10:31] 2025-07-27 22:09:43,380 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:10:31] 2025-07-27 22:09:43,381 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:10:31] 2025-07-27 22:09:43,537 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:10:31] 2025-07-27 22:09:43,559 | INFO     | sum of square deviations: 74978637493.83997
[2025-07-27 18:10:31] 2025-07-27 22:09:43,721 | INFO     | sum of deviations: 273133375134.12836
[2025-07-27 18:10:31] 2025-07-27 22:09:43,722 | INFO     | mean x: 1753635136.0160513
[2025-07-27 18:10:31] 2025-07-27 22:09:43,722 | INFO     | mean y: 2077416.9871589085
[2025-07-27 18:10:31] 2025-07-27 22:09:43,722 | INFO     | -- intersect: -6386092593.34694
[2025-07-27 18:10:31] 2025-07-27 22:09:43,723 | INFO     | intersect: -6386092593.34694
[2025-07-27 18:10:31] 2025-07-27 22:09:43,745 | INFO     | chi2: 5.586588485894353
[2025-07-27 18:10:31] 2025-07-27 22:09:43,779 | INFO     | sum of square deviations: 73187958974.18282
[2025-07-27 18:10:31] 2025-07-27 22:09:43,946 | INFO     | sum of deviations: 335864245424.3477
[2025-07-27 18:10:31] 2025-07-27 22:09:43,947 | INFO     | mean x: 1753634983.5226538
[2025-07-27 18:10:31] 2025-07-27 22:09:43,947 | INFO     | mean y: 2082734.153721683
[2025-07-27 18:10:31] 2025-07-27 22:09:43,968 | INFO     | -- intersect: -8045460861.075372
[2025-07-27 18:10:31] 2025-07-27 22:09:43,969 | INFO     | intersect: -8045460861.075372
[2025-07-27 18:10:31] 2025-07-27 22:09:43,972 | INFO     | chi2: 4.267816769427264
[2025-07-27 18:10:31] 2025-07-27 22:09:43,989 | INFO     | current chi2=4.267816769427264 (change=23.606029328934326 %)
[2025-07-27 18:10:31] 2025-07-27 22:09:43,990 | INFO     | right removable region: 617
[2025-07-27 18:10:31] 2025-07-27 22:09:44,009 | INFO     | sum of square deviations: 73187686732.22658
[2025-07-27 18:10:31] 2025-07-27 22:09:44,168 | INFO     | sum of deviations: 128279298833.56934
[2025-07-27 18:10:31] 2025-07-27 22:09:44,179 | INFO     | mean x: 1753635288.5210357
[2025-07-27 18:10:31] 2025-07-27 22:09:44,180 | INFO     | mean y: 2089738.6100323624
[2025-07-27 18:10:31] 2025-07-27 22:09:44,180 | INFO     | -- intersect: -3071584471.702568
[2025-07-27 18:10:31] 2025-07-27 22:09:44,180 | INFO     | intersect: -3071584471.702568
[2025-07-27 18:10:31] 2025-07-27 22:09:44,203 | INFO     | chi2: 2.703703768419918
[2025-07-27 18:10:31] 2025-07-27 22:09:44,204 | INFO     | current chi2=2.703703768419918 (change=51.60367055410412 %)
[2025-07-27 18:10:31] 2025-07-27 22:09:44,228 | INFO     | sum of square deviations: 71425518392.63275
[2025-07-27 18:10:31] 2025-07-27 22:09:44,401 | INFO     | sum of deviations: 59784321334.41104
[2025-07-27 18:10:31] 2025-07-27 22:09:44,402 | INFO     | mean x: 1753635441.0244699
[2025-07-27 18:10:31] 2025-07-27 22:09:44,423 | INFO     | mean y: 2095665.572593801
[2025-07-27 18:10:31] 2025-07-27 22:09:44,424 | INFO     | -- intersect: -1465725738.7230499
[2025-07-27 18:10:31] 2025-07-27 22:09:44,424 | INFO     | intersect: -1465725738.7230499
[2025-07-27 18:10:31] 2025-07-27 22:09:44,448 | INFO     | chi2: 2.119198740590672
[2025-07-27 18:10:31] 2025-07-27 22:09:44,449 | INFO     | current chi2=2.119198740590672 (change=21.618678594025077 %)
[2025-07-27 18:10:31] 2025-07-27 22:09:44,449 | INFO     | left removable region: 20
[2025-07-27 18:10:31] 2025-07-27 22:09:44,472 | INFO     | sum of square deviations: 65977321927.03528
[2025-07-27 18:10:31] 2025-07-27 22:09:44,623 | INFO     | sum of deviations: 54202941203.83416
[2025-07-27 18:10:31] 2025-07-27 22:09:44,624 | INFO     | mean x: 1753635563.040201
[2025-07-27 18:10:31] 2025-07-27 22:09:44,646 | INFO     | mean y: 2107897.715242881
[2025-07-27 18:10:31] 2025-07-27 22:09:44,647 | INFO     | -- intersect: -1438572059.2787592
[2025-07-27 18:10:31] 2025-07-27 22:09:44,647 | INFO     | intersect: -1438572059.2787592
[2025-07-27 18:10:31] 2025-07-27 22:09:44,659 | INFO     | chi2: 0.36933964147710435
[2025-07-27 18:10:31] 2025-07-27 22:09:44,660 | INFO     | -- intersect: -1438572059.2787592
[2025-07-27 18:10:31] 2025-07-27 22:09:44,661 | INFO     | current memory leak: 0.82 B/s (using 597 data points, chi2=0.37)
[2025-07-27 18:10:31] 2025-07-27 22:09:44,680 | INFO     | could have reported an average CPU frequency of 999 MHz (24 samples)
[2025-07-27 18:10:31] 2025-07-27 22:09:44,681 | INFO     | ..............................
[2025-07-27 18:10:31] 2025-07-27 22:09:44,682 | INFO     | . Timing measurements:
[2025-07-27 18:10:31] 2025-07-27 22:09:44,682 | INFO     | . get job = 1 s
[2025-07-27 18:10:31] 2025-07-27 22:09:44,682 | INFO     | . initial setup = 7 s
[2025-07-27 18:10:31] 2025-07-27 22:09:44,701 | INFO     | . payload setup = 68 s
[2025-07-27 18:10:31] 2025-07-27 22:09:44,702 | INFO     | . stage-in = 0 s
[2025-07-27 18:10:31] 2025-07-27 22:09:44,702 | INFO     | . payload execution = 37988 s
[2025-07-27 18:10:31] 2025-07-27 22:09:44,702 | INFO     | . stage-out = 16 s
[2025-07-27 18:10:31] 2025-07-27 22:09:44,702 | INFO     | . log creation = 1 s
[2025-07-27 18:10:31] 2025-07-27 22:09:44,702 | INFO     | ..............................
[2025-07-27 18:10:31] 2025-07-27 22:09:46,732 | INFO     | 
[2025-07-27 18:10:31] 2025-07-27 22:09:46,733 | INFO     | job summary report
[2025-07-27 18:10:31] 2025-07-27 22:09:46,733 | INFO     | --------------------------------------------------
[2025-07-27 18:10:31] 2025-07-27 22:09:46,733 | INFO     | PanDA job id: 6745352251
[2025-07-27 18:10:31] 2025-07-27 22:09:46,733 | INFO     | task id: 45743349
[2025-07-27 18:10:31] 2025-07-27 22:09:46,733 | INFO     | errors: (none)
[2025-07-27 18:10:31] 2025-07-27 22:09:46,734 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:10:31] 2025-07-27 22:09:46,734 | INFO     | pilot state: finished 
[2025-07-27 18:10:31] 2025-07-27 22:09:46,734 | INFO     | transexitcode: 0
[2025-07-27 18:10:31] 2025-07-27 22:09:46,734 | INFO     | exeerrorcode: 0
[2025-07-27 18:10:31] 2025-07-27 22:09:46,734 | INFO     | exeerrordiag: 
[2025-07-27 18:10:31] 2025-07-27 22:09:46,735 | INFO     | exitcode: 0
[2025-07-27 18:10:31] 2025-07-27 22:09:46,735 | INFO     | exitmsg: OK
[2025-07-27 18:10:31] 2025-07-27 22:09:46,735 | INFO     | cpuconsumptiontime: 129302 s
[2025-07-27 18:10:31] 2025-07-27 22:09:46,735 | INFO     | nevents: 400
[2025-07-27 18:10:31] 2025-07-27 22:09:46,756 | INFO     | neventsw: 0
[2025-07-27 18:10:31] 2025-07-27 22:09:46,756 | INFO     | pid: 1187055
[2025-07-27 18:10:31] 2025-07-27 22:09:46,757 | INFO     | pgrp: 1187055
[2025-07-27 18:10:31] 2025-07-27 22:09:46,757 | INFO     | corecount: 8
[2025-07-27 18:10:31] 2025-07-27 22:09:46,757 | INFO     | event service: False
[2025-07-27 18:10:31] 2025-07-27 22:09:46,757 | INFO     | sizes: {0: 2397248, 1: 2397304, 2: 2397332, 3: 2397332, 4: 2397531, 6: 2397559, 7: 2397715, 19: 2397743, 32: 2397771, 44: 2397799, 45: 2398089, 56: 2398397, 38064:
[2025-07-27 18:10:31] 2025-07-27 22:09:46,757 | INFO     | --------------------------------------------------
[2025-07-27 18:10:31] 2025-07-27 22:09:46,757 | INFO     | 
[2025-07-27 18:10:31] 2025-07-27 22:09:46,758 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-27 18:10:31] 2025-07-27 22:09:47,106 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,108 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,108 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,108 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,109 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,109 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,109 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,110 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,110 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,110 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,111 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,111 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,111 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,112 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,112 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,112 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,112 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,113 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:10:31] 2025-07-27 22:09:47,113 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,113 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:10:31] 2025-07-27 22:09:47,114 | INFO     | job 6745352251 has completed (purged errors)
[2025-07-27 18:10:31] 2025-07-27 22:09:47,116 | INFO     | overall cleanup function is called
[2025-07-27 18:10:31] 2025-07-27 22:09:48,137 | INFO     | --- collectZombieJob: --- 10, [1187055]
[2025-07-27 18:10:31] 2025-07-27 22:09:48,138 | INFO     | zombie collector waiting for pid 1187055
[2025-07-27 18:10:31] 2025-07-27 22:09:48,139 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:10:31] 2025-07-27 22:09:48,139 | INFO     | collected zombie processes
[2025-07-27 18:10:31] 2025-07-27 22:09:48,139 | INFO     | will attempt to kill all subprocesses of pid=1187055
[2025-07-27 18:10:31] 2025-07-27 22:09:56,102 | INFO     | process IDs to be killed: [1187055] (in reverse order)
[2025-07-27 18:10:31] 2025-07-27 22:09:57,922 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:10:31] 2025-07-27 22:09:57,924 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:10:31] 2025-07-27 22:09:58,167 | INFO     | did not find any defunct processes belonging to 1187055
[2025-07-27 18:10:31] 2025-07-27 22:09:58,409 | INFO     | did not find any defunct processes belonging to 1187055
[2025-07-27 18:10:31] 2025-07-27 22:09:58,411 | INFO     | ready for new job
[2025-07-27 18:10:31] 2025-07-27 22:09:58,412 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:10:31] 2025-07-27 22:09:58,438 | INFO     | ***************************************
[2025-07-27 18:10:31] 2025-07-27 22:09:58,439 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:10:31] 2025-07-27 22:09:58,461 | INFO     | ***************************************
[2025-07-27 18:10:31] 2025-07-27 22:09:58,461 | INFO     | 
[2025-07-27 18:10:31] 2025-07-27 22:09:58,538 | INFO     | architecture information:
[2025-07-27 18:10:31] 2025-07-27 22:09:58,570 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:10:31] 2025-07-27 22:09:58,798 | INFO     | cat /etc/os-release:
[2025-07-27 18:10:31] NAME="CentOS Linux"
[2025-07-27 18:10:31] VERSION="7 (Core)"
[2025-07-27 18:10:31] ID="centos"
[2025-07-27 18:10:31] ID_LIKE="rhel fedora"
[2025-07-27 18:10:31] VERSION_ID="7"
[2025-07-27 18:10:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:10:31] ANSI_COLOR="0;31"
[2025-07-27 18:10:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:10:31] HOME_URL="https://www.centos.org/"
[2025-07-27 18:10:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:10:31] 
[2025-07-27 18:10:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:10:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:10:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:10:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:10:31] 
[2025-07-27 18:10:31] 2025-07-27 22:09:58,799 | INFO     | ***************************************
[2025-07-27 18:10:31] 2025-07-27 22:09:59,303 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-27 18:10:31] 2025-07-27 22:09:59,477 | INFO     | sufficient remaining disk space (75532075008 B)
[2025-07-27 18:10:31] 2025-07-27 22:09:59,482 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:10:31] 2025-07-27 22:09:59,482 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:10:31] 2025-07-27 22:09:59,483 | INFO     | update_server=False
[2025-07-27 18:10:31] 2025-07-27 22:09:59,483 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:10:31] 2025-07-27 22:09:59,489 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:10:31] 2025-07-27 22:09:59,490 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:10:31] 2025-07-27 22:09:59,490 | INFO     | aborting loop
[2025-07-27 18:10:31] 2025-07-27 22:09:59,641 | INFO     | all job control threads have been joined
[2025-07-27 18:10:31] 2025-07-27 22:09:59,794 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:10:31] 2025-07-27 22:10:00,175 | INFO     | all payload control threads have been joined
[2025-07-27 18:10:31] 2025-07-27 22:10:00,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:10:31] 2025-07-27 22:10:00,384 | INFO     | all data control threads have been joined
[2025-07-27 18:10:31] 2025-07-27 22:10:00,490 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:00,497 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:00,504 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:00,506 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:00,511 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:00,520 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:00,648 | INFO     | [job] control thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:00,800 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:00,915 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:01,181 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:01,182 | INFO     | [payload] control thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:01,390 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:01,391 | INFO     | [data] control thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:01,934 | INFO     | [job] validate thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:02,200 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:03,515 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:10:31] 2025-07-27 22:10:04,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139998413399872)>', '<ExcThread(monitor, started 139997931886336)>']
[2025-07-27 18:10:31] 2025-07-27 22:10:09,199 | INFO     | all workflow threads have been joined
[2025-07-27 18:10:31] 2025-07-27 22:10:09,199 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:10:31] 2025-07-27 22:10:09,200 | INFO     | traces error code: 0
[2025-07-27 18:10:31] 2025-07-27 22:10:09,201 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:10:31] 2025-07-27 22:10:28,242 | INFO     | PID=1163265 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:10:31] 2025-07-27 22:10:28,244 | INFO     | .. there are 33 such processes running
[2025-07-27 18:10:31] 2025-07-27 22:10:28,247 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:10:31] 2025-07-27 22:10:28,247 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:10:31] 2025-07-27 22:10:28,252 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:10:31] 2025-07-27 22:10:28,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:10:31] 2025-07-27 22:10:28,252 | INFO     | [monitor] control thread has ended
[2025-07-27 18:10:31] 2025-07-27 22:10:29,147 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:10:31] 2025-07-27 22:10:29,197 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:10:31] 2025-07-27 22:10:29,232 [wrapper] pilotpid: 1163265
[2025-07-27 18:10:31] 2025-07-27 22:10:29,264 [wrapper] Pilot exit status: 0
[2025-07-27 18:10:31] 2025-07-27 22:10:29,409 [wrapper] pandaids: 6745352251 6745352251
[2025-07-27 18:10:31] 2025-07-27 22:10:29,886 [wrapper] cleanup supervisor_pilot 3279669 1163266
[2025-07-27 18:10:31] 2025-07-27 22:10:29,911 [wrapper] Test setup, not cleaning
[2025-07-27 18:10:31] 2025-07-27 22:10:29,962 [wrapper] apfmon messages muted
[2025-07-27 18:10:31] 2025-07-27 22:10:29,998 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:10:31] 2025-07-27 22:10:30,033 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:10:31]  *** Error codes and diagnostics ***
[2025-07-27 18:10:31]     "exeErrorCode": 0,
[2025-07-27 18:10:31]     "exeErrorDiag": "",
[2025-07-27 18:10:31]     "pilotErrorCode": 0,
[2025-07-27 18:10:31]     "pilotErrorDiag": "",
[2025-07-27 18:10:31]  *** Listing of results directory ***
[2025-07-27 18:10:31] total 510416
[2025-07-27 18:10:31] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-27 18:10:31] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 14:23 queuedata.json
[2025-07-27 18:10:31] -rwx------. 1 boincer umatlas     36292 Jul 26 14:25 runpilot2-wrapper.sh
[2025-07-27 18:10:31] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 14:25 pilot3.tar.gz
[2025-07-27 18:10:31] -rw-r--r--. 1 boincer umatlas       100 Jul 26 19:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:10:31] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 19:40 run_atlas
[2025-07-27 18:10:31] -rw-r--r--. 1 boincer umatlas       105 Jul 26 19:40 job.xml
[2025-07-27 18:10:31] -rw-r--r--. 3 boincer umatlas 150282097 Jul 26 19:40 EVNT.45743347._002386.pool.root.1
[2025-07-27 18:10:31] -rw-r--r--. 3 boincer umatlas 150282097 Jul 26 19:40 ATLAS.root_0
[2025-07-27 18:10:31] -rw-r--r--. 2 boincer umatlas    542893 Jul 26 19:40 input.tar.gz
[2025-07-27 18:10:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 19:40 start_atlas.sh
[2025-07-27 18:10:31] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 19:40 shared
[2025-07-27 18:10:31] -rw-r--r--. 1 boincer umatlas         0 Jul 26 19:40 boinc_lockfile
[2025-07-27 18:10:31] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 07:30 pandaJob.out
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas    980109 Jul 27 07:32 agis_schedconf.cvmfs.json
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas 213274177 Jul 27 18:06 HITS.45743349._042321.pool.root.1
[2025-07-27 18:10:31] -rw-r--r--. 1 boincer umatlas       532 Jul 27 18:06 boinc_task_state.xml
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas      1041 Jul 27 18:08 memory_monitor_summary.json
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas   1593052 Jul 27 18:08 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas    528215 Jul 27 18:08 log.45743349._042321.job.log.tgz.1
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas      7836 Jul 27 18:09 heartbeat.json
[2025-07-27 18:10:31] -rw-r--r--. 1 boincer umatlas      6859 Jul 27 18:10 init_data.xml
[2025-07-27 18:10:31] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 18:10 boinc_mmap_file
[2025-07-27 18:10:31] -rw-r--r--. 1 boincer umatlas        29 Jul 27 18:10 wrapper_checkpoint.txt
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas        96 Jul 27 18:10 pilot_heartbeat.json
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas       823 Jul 27 18:10 pilotlog.txt
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas   1950339 Jul 27 18:10 log.45743349._042321.job.log.1
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas       357 Jul 27 18:10 output.list
[2025-07-27 18:10:31] -rw-r--r--. 1 boincer umatlas       620 Jul 27 18:10 runtime_log
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas   2498560 Jul 27 18:10 result.tar.gz
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas       789 Jul 27 18:10 RV9MDm3kyz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrnSLDm9olgLn.diag
[2025-07-27 18:10:31] -rw-r--r--. 1 boincer umatlas      8756 Jul 27 18:10 runtime_log.err
[2025-07-27 18:10:31] -rw-r--r--. 1 boincer umatlas     20563 Jul 27 18:10 stderr.txt
[2025-07-27 18:10:31] HITS file was successfully produced:
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas 213274177 Jul 27 18:06 shared/HITS.pool.root.1
[2025-07-27 18:10:31]  *** Contents of shared directory: ***
[2025-07-27 18:10:31] total 358028
[2025-07-27 18:10:31] -rw-r--r--. 3 boincer umatlas 150282097 Jul 26 19:40 ATLAS.root_0
[2025-07-27 18:10:31] -rw-r--r--. 2 boincer umatlas    542893 Jul 26 19:40 input.tar.gz
[2025-07-27 18:10:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 19:40 start_atlas.sh
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas 213274177 Jul 27 18:06 HITS.pool.root.1
[2025-07-27 18:10:31] -rw-------. 1 boincer umatlas   2498560 Jul 27 18:10 result.tar.gz
18:10:32 (1151293): run_atlas exited; CPU time 132570.376935
18:10:32 (1151293): called boinc_finish(0)

</stderr_txt>
]]>

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