Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:48:50 (648403): wrapper (7.7.26015): starting
19:48:50 (648403): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 19:48:50] Arguments: --nthreads 8
[2025-07-26 19:48:50] Threads: 8
[2025-07-26 19:48:50] Checking for CVMFS
[2025-07-26 19:48:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 19:48:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 19:48:50] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 19:48:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 19:48:50] 2.12.6.0 126724 13402 361008 148793 0 103 23997421 32935937 22122 16776704 2 43022862 99.660 70500481 11513 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 19:48:50] CVMFS is ok
[2025-07-26 19:48:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 19:48:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 19:48:50] Further information can be found at the LHC@home message board.
[2025-07-26 19:48:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 19:48:50] Checking for apptainer binary...
[2025-07-26 19:48:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 19:48:50] Running /usr/bin/apptainer --version
[2025-07-26 19:48:50] apptainer version 1.4.1-1.el9
[2025-07-26 19:48:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 19:48:50] c6-12-27-3.aglt2.org
[2025-07-26 19:48:50] apptainer works
[2025-07-26 19:48:51] Set ATHENA_PROC_NUMBER=8
[2025-07-26 19:48:51] Set ATHENA_CORE_NUMBER=8
[2025-07-26 19:48:51] Starting ATLAS job with PandaID=6745352170
[2025-07-26 19:48:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 21:48:17]  *** The last 200 lines of the pilot log: ***
[2025-07-26 21:48:17] 2025-07-27 01:47:40,328 | INFO     | .. there are 31 such processes running
[2025-07-26 21:48:17] 2025-07-27 01:47:42,564 | INFO     | monitor loop #513: job 0:6745352170 is in state 'finished'
[2025-07-26 21:48:17] 2025-07-27 01:47:42,564 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 21:48:17] 2025-07-27 01:47:43,423 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 21:48:17] 2025-07-27 01:47:43,448 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2770.1935312500004
[2025-07-26 21:48:17] 2025-07-27 01:47:43,465 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745352170/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 21:48:17] 2025-07-27 01:47:43,466 | INFO     | extracted standard info from prmon json
[2025-07-26 21:48:17] 2025-07-27 01:47:43,466 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 21:48:17] 2025-07-27 01:47:43,466 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 21:48:17] 2025-07-27 01:47:43,467 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 21:48:17] 2025-07-27 01:47:43,467 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 21:48:17] 2025-07-27 01:47:43,470 | INFO     | fitting pss+swap vs Time
[2025-07-26 21:48:17] 2025-07-27 01:47:43,470 | INFO     | sum of square deviations: 483971865.0
[2025-07-26 21:48:17] 2025-07-27 01:47:43,471 | INFO     | sum of deviations: -5459845900.5
[2025-07-26 21:48:17] 2025-07-27 01:47:43,471 | INFO     | mean x: 1753577285.5
[2025-07-26 21:48:17] 2025-07-27 01:47:43,471 | INFO     | mean y: 2180165.6982758623
[2025-07-26 21:48:17] 2025-07-27 01:47:43,471 | INFO     | -- intersect: 19784862684.74738
[2025-07-26 21:48:17] 2025-07-27 01:47:43,471 | INFO     | intersect: 19784862684.74738
[2025-07-26 21:48:17] 2025-07-27 01:47:43,471 | INFO     | chi2: 1.8162009967813668
[2025-07-26 21:48:17] 2025-07-27 01:47:43,472 | INFO     | sum of square deviations: 424045160.0
[2025-07-26 21:48:17] 2025-07-27 01:47:43,472 | INFO     | sum of deviations: -4689304057.0
[2025-07-26 21:48:17] 2025-07-27 01:47:43,472 | INFO     | mean x: 1753577133.0
[2025-07-26 21:48:17] 2025-07-27 01:47:43,472 | INFO     | mean y: 2182096.225225225
[2025-07-26 21:48:17] 2025-07-27 01:47:43,472 | INFO     | -- intersect: 19394117530.741985
[2025-07-26 21:48:17] 2025-07-27 01:47:43,473 | INFO     | intersect: 19394117530.741985
[2025-07-26 21:48:17] 2025-07-27 01:47:43,473 | INFO     | chi2: 1.8150369637572228
[2025-07-26 21:48:17] 2025-07-27 01:47:43,473 | INFO     | current chi2=1.8150369637572228 (change=0.06409164107975404 %)
[2025-07-26 21:48:17] 2025-07-27 01:47:43,473 | INFO     | right removable region: 110
[2025-07-26 21:48:17] 2025-07-27 01:47:43,473 | INFO     | sum of square deviations: 424045160.0
[2025-07-26 21:48:17] 2025-07-27 01:47:43,474 | INFO     | sum of deviations: -20598021280.000004
[2025-07-26 21:48:17] 2025-07-27 01:47:43,474 | INFO     | mean x: 1753577438.0
[2025-07-26 21:48:17] 2025-07-27 01:47:43,474 | INFO     | mean y: 2218020.3873873875
[2025-07-26 21:48:17] 2025-07-27 01:47:43,474 | INFO     | -- intersect: 85182356343.5129
[2025-07-26 21:48:17] 2025-07-27 01:47:43,474 | INFO     | intersect: 85182356343.5129
[2025-07-26 21:48:17] 2025-07-27 01:47:43,474 | INFO     | chi2: 0.3400560929781741
[2025-07-26 21:48:17] 2025-07-27 01:47:43,474 | INFO     | current chi2=0.3400560929781741 (change=81.27651655401499 %)
[2025-07-26 21:48:17] 2025-07-27 01:47:43,475 | INFO     | sum of square deviations: 369281342.5
[2025-07-26 21:48:17] 2025-07-27 01:47:43,475 | INFO     | sum of deviations: -18723653143.5
[2025-07-26 21:48:17] 2025-07-27 01:47:43,475 | INFO     | mean x: 1753577590.5
[2025-07-26 21:48:17] 2025-07-27 01:47:43,475 | INFO     | mean y: 2212580.5754716983
[2025-07-26 21:48:17] 2025-07-27 01:47:43,475 | INFO     | -- intersect: 88913768042.48315
[2025-07-26 21:48:17] 2025-07-27 01:47:43,475 | INFO     | intersect: 88913768042.48315
[2025-07-26 21:48:17] 2025-07-27 01:47:43,476 | INFO     | chi2: 0.3037489732214055
[2025-07-26 21:48:17] 2025-07-27 01:47:43,476 | INFO     | current chi2=0.3037489732214055 (change=10.676803182320542 %)
[2025-07-26 21:48:17] 2025-07-27 01:47:43,476 | INFO     | left removable region: 20
[2025-07-26 21:48:17] 2025-07-27 01:47:43,476 | INFO     | sum of square deviations: 226022842.5
[2025-07-26 21:48:17] 2025-07-27 01:47:43,476 | INFO     | sum of deviations: -7842712050.0
[2025-07-26 21:48:17] 2025-07-27 01:47:43,477 | INFO     | mean x: 1753577712.5
[2025-07-26 21:48:17] 2025-07-27 01:47:43,477 | INFO     | mean y: 2181957.933333333
[2025-07-26 21:48:17] 2025-07-27 01:47:43,477 | INFO     | -- intersect: 60849151690.362854
[2025-07-26 21:48:17] 2025-07-27 01:47:43,477 | INFO     | intersect: 60849151690.362854
[2025-07-26 21:48:17] 2025-07-27 01:47:43,477 | INFO     | chi2: 0.21900272907343746
[2025-07-26 21:48:17] 2025-07-27 01:47:43,477 | INFO     | -- intersect: 60849151690.362854
[2025-07-26 21:48:17] 2025-07-27 01:47:43,477 | INFO     | current memory leak: -34.70 B/s (using 90 data points, chi2=0.22)
[2025-07-26 21:48:17] 2025-07-27 01:47:43,478 | INFO     | could have reported an average CPU frequency of 2645 MHz (7 samples)
[2025-07-26 21:48:17] 2025-07-27 01:47:43,478 | INFO     | ..............................
[2025-07-26 21:48:17] 2025-07-27 01:47:43,478 | INFO     | . Timing measurements:
[2025-07-26 21:48:17] 2025-07-27 01:47:43,478 | INFO     | . get job = 0 s
[2025-07-26 21:48:17] 2025-07-27 01:47:43,478 | INFO     | . initial setup = 2 s
[2025-07-26 21:48:17] 2025-07-27 01:47:43,478 | INFO     | . payload setup = 9 s
[2025-07-26 21:48:17] 2025-07-27 01:47:43,478 | INFO     | . stage-in = 0 s
[2025-07-26 21:48:17] 2025-07-27 01:47:43,478 | INFO     | . payload execution = 7077 s
[2025-07-26 21:48:17] 2025-07-27 01:47:43,479 | INFO     | . stage-out = 0 s
[2025-07-26 21:48:17] 2025-07-27 01:47:43,479 | INFO     | . log creation = 0 s
[2025-07-26 21:48:17] 2025-07-27 01:47:43,479 | INFO     | ..............................
[2025-07-26 21:48:17] 2025-07-27 01:47:43,588 | INFO     | 
[2025-07-26 21:48:17] 2025-07-27 01:47:43,588 | INFO     | job summary report
[2025-07-26 21:48:17] 2025-07-27 01:47:43,589 | INFO     | --------------------------------------------------
[2025-07-26 21:48:17] 2025-07-27 01:47:43,589 | INFO     | PanDA job id: 6745352170
[2025-07-26 21:48:17] 2025-07-27 01:47:43,589 | INFO     | task id: 45743349
[2025-07-26 21:48:17] 2025-07-27 01:47:43,589 | INFO     | errors: (none)
[2025-07-26 21:48:17] 2025-07-27 01:47:43,589 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 21:48:17] 2025-07-27 01:47:43,589 | INFO     | pilot state: finished 
[2025-07-26 21:48:17] 2025-07-27 01:47:43,589 | INFO     | transexitcode: 0
[2025-07-26 21:48:17] 2025-07-27 01:47:43,589 | INFO     | exeerrorcode: 0
[2025-07-26 21:48:17] 2025-07-27 01:47:43,589 | INFO     | exeerrordiag: 
[2025-07-26 21:48:17] 2025-07-27 01:47:43,589 | INFO     | exitcode: 0
[2025-07-26 21:48:17] 2025-07-27 01:47:43,589 | INFO     | exitmsg: OK
[2025-07-26 21:48:17] 2025-07-27 01:47:43,589 | INFO     | cpuconsumptiontime: 52102 s
[2025-07-26 21:48:17] 2025-07-27 01:47:43,589 | INFO     | nevents: 400
[2025-07-26 21:48:17] 2025-07-27 01:47:43,589 | INFO     | neventsw: 0
[2025-07-26 21:48:17] 2025-07-27 01:47:43,590 | INFO     | pid: 658889
[2025-07-26 21:48:17] 2025-07-27 01:47:43,590 | INFO     | pgrp: 658889
[2025-07-26 21:48:17] 2025-07-27 01:47:43,590 | INFO     | corecount: 8
[2025-07-26 21:48:17] 2025-07-27 01:47:43,590 | INFO     | event service: False
[2025-07-26 21:48:17] 2025-07-27 01:47:43,590 | INFO     | sizes: {0: 2397304, 1: 2397503, 7: 2397765, 12: 2397793, 7090: 2424903, 7092: 2433901, 7095: 2434113, 7101: 2434307}
[2025-07-26 21:48:17] 2025-07-27 01:47:43,590 | INFO     | --------------------------------------------------
[2025-07-26 21:48:17] 2025-07-27 01:47:43,590 | INFO     | 
[2025-07-26 21:48:17] 2025-07-27 01:47:43,590 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-26 21:48:17] 2025-07-27 01:47:43,618 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,618 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,618 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,618 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,619 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,619 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,619 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,619 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,619 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,619 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,619 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,619 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,619 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,619 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,619 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,619 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,620 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,620 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 21:48:17] 2025-07-27 01:47:43,620 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,620 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 21:48:17] 2025-07-27 01:47:43,620 | INFO     | job 6745352170 has completed (purged errors)
[2025-07-26 21:48:17] 2025-07-27 01:47:43,620 | INFO     | overall cleanup function is called
[2025-07-26 21:48:17] 2025-07-27 01:47:44,628 | INFO     | --- collectZombieJob: --- 10, [658889]
[2025-07-26 21:48:17] 2025-07-27 01:47:44,628 | INFO     | zombie collector waiting for pid 658889
[2025-07-26 21:48:17] 2025-07-27 01:47:44,629 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 21:48:17] 2025-07-27 01:47:44,629 | INFO     | collected zombie processes
[2025-07-26 21:48:17] 2025-07-27 01:47:44,629 | INFO     | will attempt to kill all subprocesses of pid=658889
[2025-07-26 21:48:17] 2025-07-27 01:47:45,153 | INFO     | process IDs to be killed: [658889] (in reverse order)
[2025-07-26 21:48:17] 2025-07-27 01:47:45,298 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 21:48:17] 2025-07-27 01:47:45,299 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 21:48:17] 2025-07-27 01:47:45,325 | INFO     | did not find any defunct processes belonging to 658889
[2025-07-26 21:48:17] 2025-07-27 01:47:45,351 | INFO     | did not find any defunct processes belonging to 658889
[2025-07-26 21:48:17] 2025-07-27 01:47:45,351 | INFO     | ready for new job
[2025-07-26 21:48:17] 2025-07-27 01:47:45,352 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 21:48:17] 2025-07-27 01:47:45,354 | INFO     | ***************************************
[2025-07-26 21:48:17] 2025-07-27 01:47:45,354 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 21:48:17] 2025-07-27 01:47:45,354 | INFO     | ***************************************
[2025-07-26 21:48:17] 2025-07-27 01:47:45,354 | INFO     | 
[2025-07-26 21:48:17] 2025-07-27 01:47:45,372 | INFO     | architecture information:
[2025-07-26 21:48:17] 2025-07-27 01:47:45,373 | INFO     | executing command: cat /etc/os-release
[2025-07-26 21:48:17] 2025-07-27 01:47:45,392 | INFO     | cat /etc/os-release:
[2025-07-26 21:48:17] NAME="CentOS Linux"
[2025-07-26 21:48:17] VERSION="7 (Core)"
[2025-07-26 21:48:17] ID="centos"
[2025-07-26 21:48:17] ID_LIKE="rhel fedora"
[2025-07-26 21:48:17] VERSION_ID="7"
[2025-07-26 21:48:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 21:48:17] ANSI_COLOR="0;31"
[2025-07-26 21:48:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 21:48:17] HOME_URL="https://www.centos.org/"
[2025-07-26 21:48:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 21:48:17] 
[2025-07-26 21:48:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 21:48:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 21:48:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 21:48:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 21:48:17] 
[2025-07-26 21:48:17] 2025-07-27 01:47:45,392 | INFO     | ***************************************
[2025-07-26 21:48:17] 2025-07-27 01:47:45,895 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 21:48:17] 2025-07-27 01:47:45,918 | INFO     | sufficient remaining disk space (95850332160 B)
[2025-07-26 21:48:17] 2025-07-27 01:47:45,918 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 21:48:17] 2025-07-27 01:47:45,919 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 21:48:17] 2025-07-27 01:47:45,919 | INFO     | update_server=False
[2025-07-26 21:48:17] 2025-07-27 01:47:45,919 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 21:48:17] 2025-07-27 01:47:46,078 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 21:48:17] 2025-07-27 01:47:46,078 | INFO     | aborting loop
[2025-07-26 21:48:17] 2025-07-27 01:47:46,132 | INFO     | all data control threads have been joined
[2025-07-26 21:48:17] 2025-07-27 01:47:46,924 | INFO     | [job] retrieve thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:46,952 | INFO     | all payload control threads have been joined
[2025-07-26 21:48:17] 2025-07-27 01:47:47,053 | INFO     | all job control threads have been joined
[2025-07-26 21:48:17] 2025-07-27 01:47:47,071 | INFO     | [data] copytool_in thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:47,083 | INFO     | [job] job monitor thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:47,100 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 21:48:17] 2025-07-27 01:47:47,139 | INFO     | [data] control thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:47,169 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:47,208 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:47,844 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 21:48:17] 2025-07-27 01:47:47,895 | INFO     | [payload] validate_post thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:47,958 | INFO     | [payload] control thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:48,059 | INFO     | [job] control thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:48,243 | INFO     | [payload] failed_post thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:48,261 | INFO     | [job] validate thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:48,380 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:48,598 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 21:48:17] 2025-07-27 01:47:49,105 | INFO     | [data] copytool_out thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:49,604 | INFO     | [job] queue monitor thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:51,851 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:56,592 | INFO     | job.realtimelogging is not enabled
[2025-07-26 21:48:17] 2025-07-27 01:47:57,597 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 21:48:17] 2025-07-27 01:47:58,110 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140381660960576)>', '<ExcThread(monitor, started 140381173823232)>']
[2025-07-26 21:48:17] 2025-07-27 01:48:03,135 | INFO     | all workflow threads have been joined
[2025-07-26 21:48:17] 2025-07-27 01:48:03,135 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 21:48:17] 2025-07-27 01:48:03,136 | INFO     | traces error code: 0
[2025-07-26 21:48:17] 2025-07-27 01:48:03,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 21:48:17] 2025-07-27 01:48:17,085 | INFO     | PID=652488 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 21:48:17] 2025-07-27 01:48:17,086 | INFO     | .. there are 31 such processes running
[2025-07-26 21:48:17] 2025-07-27 01:48:17,087 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 21:48:17] 2025-07-27 01:48:17,088 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 21:48:17] 2025-07-27 01:48:17,088 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 21:48:17] 2025-07-27 01:48:17,088 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 21:48:17] 2025-07-27 01:48:17,088 | INFO     | [monitor] control thread has ended
[2025-07-26 21:48:17] 2025-07-27 01:48:17,307 [wrapper] ==== pilot stdout END ====
[2025-07-26 21:48:17] 2025-07-27 01:48:17,310 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 21:48:17] 2025-07-27 01:48:17,313 [wrapper] pilotpid: 652488
[2025-07-26 21:48:17] 2025-07-27 01:48:17,319 [wrapper] Pilot exit status: 0
[2025-07-26 21:48:17] 2025-07-27 01:48:17,340 [wrapper] pandaids: 6745352170
[2025-07-26 21:48:17] 2025-07-27 01:48:17,434 [wrapper] cleanup supervisor_pilot 1039301 652489
[2025-07-26 21:48:17] 2025-07-27 01:48:17,441 [wrapper] Test setup, not cleaning
[2025-07-26 21:48:17] 2025-07-27 01:48:17,446 [wrapper] apfmon messages muted
[2025-07-26 21:48:17] 2025-07-27 01:48:17,451 [wrapper] ==== wrapper stdout END ====
[2025-07-26 21:48:17] 2025-07-27 01:48:17,455 [wrapper] ==== wrapper stderr END ====
[2025-07-26 21:48:17]  *** Error codes and diagnostics ***
[2025-07-26 21:48:17]     "exeErrorCode": 0,
[2025-07-26 21:48:17]     "exeErrorDiag": "",
[2025-07-26 21:48:17]     "pilotErrorCode": 0,
[2025-07-26 21:48:17]     "pilotErrorDiag": "",
[2025-07-26 21:48:17]  *** Listing of results directory ***
[2025-07-26 21:48:17] total 354600
[2025-07-26 21:48:17] -rw-r--r--. 1 boincer umatlas    550332 Jun 18 11:33 pilot3.tar.gz
[2025-07-26 21:48:17] -rwx------. 1 boincer umatlas     36292 Jul 26 14:18 runpilot2-wrapper.sh
[2025-07-26 21:48:17] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 14:18 queuedata.json
[2025-07-26 21:48:17] -rw-r--r--. 1 boincer umatlas       100 Jul 26 19:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 21:48:17] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 19:48 run_atlas
[2025-07-26 21:48:17] -rw-r--r--. 1 boincer umatlas       105 Jul 26 19:48 job.xml
[2025-07-26 21:48:17] -rw-r--r--. 2 boincer umatlas 146065392 Jul 26 19:48 EVNT.45743347._002381.pool.root.1
[2025-07-26 21:48:17] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 19:48 start_atlas.sh
[2025-07-26 21:48:17] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 19:48 shared
[2025-07-26 21:48:17] -rw-r--r--. 2 boincer umatlas    564557 Jul 26 19:48 input.tar.gz
[2025-07-26 21:48:17] -rw-r--r--. 1 boincer umatlas         0 Jul 26 19:48 boinc_lockfile
[2025-07-26 21:48:17] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 19:48 pandaJob.out
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas    980117 Jul 26 19:49 agis_schedconf.cvmfs.json
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas   1593052 Jul 26 19:49 agis_ddmendpoints.agis.ALL.json
[2025-07-26 21:48:17] drwx------. 6 boincer umatlas      4096 Jul 26 19:49 pilot3
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas 211137027 Jul 26 21:46 HITS.45743349._042240.pool.root.1
[2025-07-26 21:48:17] -rw-r--r--. 1 boincer umatlas       529 Jul 26 21:47 boinc_task_state.xml
[2025-07-26 21:48:17] -rw-r--r--. 1 boincer umatlas      6856 Jul 26 21:47 init_data.xml
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas      1055 Jul 26 21:47 memory_monitor_summary.json
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas    322294 Jul 26 21:47 log.45743349._042240.job.log.tgz.1
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas      7825 Jul 26 21:47 heartbeat.json
[2025-07-26 21:48:17] -rw-r--r--. 1 boincer umatlas        27 Jul 26 21:48 wrapper_checkpoint.txt
[2025-07-26 21:48:17] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 21:48 boinc_mmap_file
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas        95 Jul 26 21:48 pilot_heartbeat.json
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas       822 Jul 26 21:48 pilotlog.txt
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas    670884 Jul 26 21:48 log.45743349._042240.job.log.1
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas       357 Jul 26 21:48 output.list
[2025-07-26 21:48:17] -rw-r--r--. 1 boincer umatlas       620 Jul 26 21:48 runtime_log
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas   1013760 Jul 26 21:48 result.tar.gz
[2025-07-26 21:48:17] -rw-r--r--. 1 boincer umatlas      8670 Jul 26 21:48 runtime_log.err
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas       655 Jul 26 21:48 0L7NDm1eyz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmvD1KDmHv7Ggn.diag
[2025-07-26 21:48:17] -rw-r--r--. 1 boincer umatlas     21089 Jul 26 21:48 stderr.txt
[2025-07-26 21:48:17] HITS file was successfully produced:
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas 211137027 Jul 26 21:46 shared/HITS.pool.root.1
[2025-07-26 21:48:17]  *** Contents of shared directory: ***
[2025-07-26 21:48:17] total 350404
[2025-07-26 21:48:17] -rw-r--r--. 2 boincer umatlas 146065392 Jul 26 19:48 ATLAS.root_0
[2025-07-26 21:48:17] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 19:48 start_atlas.sh
[2025-07-26 21:48:17] -rw-r--r--. 2 boincer umatlas    564557 Jul 26 19:48 input.tar.gz
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas 211137027 Jul 26 21:46 HITS.pool.root.1
[2025-07-26 21:48:17] -rw-------. 1 boincer umatlas   1013760 Jul 26 21:48 result.tar.gz
21:48:18 (648403): run_atlas exited; CPU time 52394.154689
21:48:18 (648403): called boinc_finish(0)

</stderr_txt>
]]>

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