Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:15:19 (2433344): wrapper (7.7.26015): starting
19:15:19 (2433344): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 19:15:19] Arguments: --nthreads 8
[2025-07-26 19:15:19] Threads: 8
[2025-07-26 19:15:19] Checking for CVMFS
[2025-07-26 19:15:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 19:15:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 19:15:19] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 19:15:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 19:15:19] 2.13.0.0 2367554 17588 288880 148792 1 502 23932970 32935936 17447 16776704 1 115874322 99.603 143177499 17327 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 19:15:19] CVMFS is ok
[2025-07-26 19:15:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 19:15:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 19:15:19] Further information can be found at the LHC@home message board.
[2025-07-26 19:15:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 19:15:19] Checking for apptainer binary...
[2025-07-26 19:15:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 19:15:19] Running /usr/bin/apptainer --version
[2025-07-26 19:15:19] apptainer version 1.4.1-1.el9
[2025-07-26 19:15:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 19:15:20] c7-2-15.aglt2.org
[2025-07-26 19:15:20] apptainer works
[2025-07-26 19:15:20] Set ATHENA_PROC_NUMBER=8
[2025-07-26 19:15:20] Set ATHENA_CORE_NUMBER=8
[2025-07-26 19:15:20] Starting ATLAS job with PandaID=6745351503
[2025-07-26 19:15:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 21:21:42]  *** The last 200 lines of the pilot log: ***
[2025-07-26 21:21:43] 2025-07-27 01:21:09,833 | INFO     | PID=2437382 has CPU usage=12.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-26 21:21:43] 2025-07-27 01:21:09,833 | INFO     | .. there are 20 such processes running
[2025-07-26 21:21:43] 2025-07-27 01:21:09,923 | INFO     | monitor loop #517: job 0:6745351503 is in state 'finished'
[2025-07-26 21:21:43] 2025-07-27 01:21:09,923 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 21:21:43] 2025-07-27 01:21:10,506 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 21:21:43] 2025-07-27 01:21:10,512 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2903.606125
[2025-07-26 21:21:43] 2025-07-27 01:21:10,528 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745351503/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 21:21:43] 2025-07-27 01:21:10,528 | INFO     | extracted standard info from prmon json
[2025-07-26 21:21:43] 2025-07-27 01:21:10,529 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 21:21:43] 2025-07-27 01:21:10,529 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 21:21:43] 2025-07-27 01:21:10,529 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 21:21:43] 2025-07-27 01:21:10,529 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 21:21:43] 2025-07-27 01:21:10,532 | INFO     | fitting pss+swap vs Time
[2025-07-26 21:21:43] 2025-07-27 01:21:10,532 | INFO     | sum of square deviations: 576985702.0
[2025-07-26 21:21:43] 2025-07-27 01:21:10,532 | INFO     | sum of deviations: 12979363328.000004
[2025-07-26 21:21:43] 2025-07-27 01:21:10,532 | INFO     | mean x: 1753575498.0
[2025-07-26 21:21:43] 2025-07-27 01:21:10,532 | INFO     | mean y: 2200588.8699186994
[2025-07-26 21:21:43] 2025-07-27 01:21:10,533 | INFO     | -- intersect: -39444692865.72827
[2025-07-26 21:21:43] 2025-07-27 01:21:10,533 | INFO     | intersect: -39444692865.72827
[2025-07-26 21:21:43] 2025-07-27 01:21:10,533 | INFO     | chi2: 1.803891078736069
[2025-07-26 21:21:43] 2025-07-27 01:21:10,533 | INFO     | sum of square deviations: 509440249.5
[2025-07-26 21:21:43] 2025-07-27 01:21:10,534 | INFO     | sum of deviations: 13168355967.999998
[2025-07-26 21:21:43] 2025-07-27 01:21:10,534 | INFO     | mean x: 1753575345.5
[2025-07-26 21:21:43] 2025-07-27 01:21:10,534 | INFO     | mean y: 2200966.8474576273
[2025-07-26 21:21:43] 2025-07-27 01:21:10,534 | INFO     | -- intersect: -45325400040.17227
[2025-07-26 21:21:43] 2025-07-27 01:21:10,534 | INFO     | intersect: -45325400040.17227
[2025-07-26 21:21:43] 2025-07-27 01:21:10,534 | INFO     | chi2: 1.802496818877289
[2025-07-26 21:21:43] 2025-07-27 01:21:10,534 | INFO     | current chi2=1.802496818877289 (change=0.07729179855786303 %)
[2025-07-26 21:21:43] 2025-07-27 01:21:10,534 | INFO     | right removable region: 117
[2025-07-26 21:21:43] 2025-07-27 01:21:10,535 | INFO     | sum of square deviations: 509440249.5
[2025-07-26 21:21:43] 2025-07-27 01:21:10,535 | INFO     | sum of deviations: -6949359577.5
[2025-07-26 21:21:43] 2025-07-27 01:21:10,535 | INFO     | mean x: 1753575650.5
[2025-07-26 21:21:43] 2025-07-27 01:21:10,535 | INFO     | mean y: 2244981.754237288
[2025-07-26 21:21:43] 2025-07-27 01:21:10,535 | INFO     | -- intersect: 23923063475.450756
[2025-07-26 21:21:43] 2025-07-27 01:21:10,535 | INFO     | intersect: 23923063475.450756
[2025-07-26 21:21:43] 2025-07-27 01:21:10,536 | INFO     | chi2: 0.07435293996575705
[2025-07-26 21:21:43] 2025-07-27 01:21:10,536 | INFO     | current chi2=0.07435293996575705 (change=95.87819126984908 %)
[2025-07-26 21:21:43] 2025-07-27 01:21:10,536 | INFO     | sum of square deviations: 447383272.0
[2025-07-26 21:21:43] 2025-07-27 01:21:10,536 | INFO     | sum of deviations: -7739218779.000003
[2025-07-26 21:21:43] 2025-07-27 01:21:10,536 | INFO     | mean x: 1753575803.0
[2025-07-26 21:21:43] 2025-07-27 01:21:10,537 | INFO     | mean y: 2246887.371681416
[2025-07-26 21:21:43] 2025-07-27 01:21:10,537 | INFO     | -- intersect: 30337102109.62418
[2025-07-26 21:21:43] 2025-07-27 01:21:10,537 | INFO     | intersect: 30337102109.62418
[2025-07-26 21:21:43] 2025-07-27 01:21:10,537 | INFO     | chi2: 0.059593588539357104
[2025-07-26 21:21:43] 2025-07-27 01:21:10,537 | INFO     | current chi2=0.059593588539357104 (change=19.850393855572232 %)
[2025-07-26 21:21:43] 2025-07-27 01:21:10,537 | INFO     | left removable region: 20
[2025-07-26 21:21:43] 2025-07-27 01:21:10,537 | INFO     | sum of square deviations: 282974608.0
[2025-07-26 21:21:43] 2025-07-27 01:21:10,538 | INFO     | sum of deviations: -4872759788.000001
[2025-07-26 21:21:43] 2025-07-27 01:21:10,538 | INFO     | mean x: 1753575925.0
[2025-07-26 21:21:43] 2025-07-27 01:21:10,538 | INFO     | mean y: 2243447.680412371
[2025-07-26 21:21:43] 2025-07-27 01:21:10,538 | INFO     | -- intersect: 30198430706.096565
[2025-07-26 21:21:43] 2025-07-27 01:21:10,538 | INFO     | intersect: 30198430706.096565
[2025-07-26 21:21:43] 2025-07-27 01:21:10,538 | INFO     | chi2: 0.054863567770189504
[2025-07-26 21:21:43] 2025-07-27 01:21:10,538 | INFO     | -- intersect: 30198430706.096565
[2025-07-26 21:21:43] 2025-07-27 01:21:10,538 | INFO     | current memory leak: -17.22 B/s (using 97 data points, chi2=0.05)
[2025-07-26 21:21:43] 2025-07-27 01:21:10,539 | INFO     | could have reported an average CPU frequency of 2963 MHz (8 samples)
[2025-07-26 21:21:43] 2025-07-27 01:21:10,539 | INFO     | ..............................
[2025-07-26 21:21:43] 2025-07-27 01:21:10,539 | INFO     | . Timing measurements:
[2025-07-26 21:21:43] 2025-07-27 01:21:10,539 | INFO     | . get job = 0 s
[2025-07-26 21:21:43] 2025-07-27 01:21:10,540 | INFO     | . initial setup = 2 s
[2025-07-26 21:21:43] 2025-07-27 01:21:10,540 | INFO     | . payload setup = 11 s
[2025-07-26 21:21:43] 2025-07-27 01:21:10,540 | INFO     | . stage-in = 0 s
[2025-07-26 21:21:43] 2025-07-27 01:21:10,540 | INFO     | . payload execution = 7486 s
[2025-07-26 21:21:43] 2025-07-27 01:21:10,540 | INFO     | . stage-out = 1 s
[2025-07-26 21:21:43] 2025-07-27 01:21:10,540 | INFO     | . log creation = 0 s
[2025-07-26 21:21:43] 2025-07-27 01:21:10,540 | INFO     | ..............................
[2025-07-26 21:21:43] 2025-07-27 01:21:10,639 | INFO     | 
[2025-07-26 21:21:43] 2025-07-27 01:21:10,640 | INFO     | job summary report
[2025-07-26 21:21:43] 2025-07-27 01:21:10,640 | INFO     | --------------------------------------------------
[2025-07-26 21:21:43] 2025-07-27 01:21:10,640 | INFO     | PanDA job id: 6745351503
[2025-07-26 21:21:43] 2025-07-27 01:21:10,640 | INFO     | task id: 45743349
[2025-07-26 21:21:43] 2025-07-27 01:21:10,640 | INFO     | errors: (none)
[2025-07-26 21:21:43] 2025-07-27 01:21:10,640 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 21:21:43] 2025-07-27 01:21:10,641 | INFO     | pilot state: finished 
[2025-07-26 21:21:43] 2025-07-27 01:21:10,641 | INFO     | transexitcode: 0
[2025-07-26 21:21:43] 2025-07-27 01:21:10,641 | INFO     | exeerrorcode: 0
[2025-07-26 21:21:43] 2025-07-27 01:21:10,641 | INFO     | exeerrordiag: 
[2025-07-26 21:21:43] 2025-07-27 01:21:10,641 | INFO     | exitcode: 0
[2025-07-26 21:21:43] 2025-07-27 01:21:10,641 | INFO     | exitmsg: OK
[2025-07-26 21:21:43] 2025-07-27 01:21:10,641 | INFO     | cpuconsumptiontime: 41406 s
[2025-07-26 21:21:43] 2025-07-27 01:21:10,641 | INFO     | nevents: 400
[2025-07-26 21:21:43] 2025-07-27 01:21:10,641 | INFO     | neventsw: 0
[2025-07-26 21:21:43] 2025-07-27 01:21:10,641 | INFO     | pid: 2444209
[2025-07-26 21:21:43] 2025-07-27 01:21:10,641 | INFO     | pgrp: 2444209
[2025-07-26 21:21:43] 2025-07-27 01:21:10,641 | INFO     | corecount: 8
[2025-07-26 21:21:43] 2025-07-27 01:21:10,641 | INFO     | event service: False
[2025-07-26 21:21:43] 2025-07-27 01:21:10,641 | INFO     | sizes: {0: 2397475, 9: 2397737, 11: 2397765, 7501: 2425430, 7502: 2425429, 7504: 2434483, 7507: 2434667, 7515: 2434861}
[2025-07-26 21:21:43] 2025-07-27 01:21:10,642 | INFO     | --------------------------------------------------
[2025-07-26 21:21:43] 2025-07-27 01:21:10,642 | INFO     | 
[2025-07-26 21:21:43] 2025-07-27 01:21:10,642 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-26 21:21:43] 2025-07-27 01:21:10,679 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,679 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,679 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,679 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,679 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,680 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,680 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,680 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,680 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,680 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,680 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,680 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,680 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,680 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,680 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,680 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,680 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,680 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 21:21:43] 2025-07-27 01:21:10,681 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,681 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 21:21:43] 2025-07-27 01:21:10,681 | INFO     | job 6745351503 has completed (purged errors)
[2025-07-26 21:21:43] 2025-07-27 01:21:10,681 | INFO     | overall cleanup function is called
[2025-07-26 21:21:43] 2025-07-27 01:21:11,690 | INFO     | --- collectZombieJob: --- 10, [2444209]
[2025-07-26 21:21:43] 2025-07-27 01:21:11,690 | INFO     | zombie collector waiting for pid 2444209
[2025-07-26 21:21:43] 2025-07-27 01:21:11,691 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 21:21:43] 2025-07-27 01:21:11,691 | INFO     | collected zombie processes
[2025-07-26 21:21:43] 2025-07-27 01:21:11,691 | INFO     | will attempt to kill all subprocesses of pid=2444209
[2025-07-26 21:21:43] 2025-07-27 01:21:12,271 | INFO     | process IDs to be killed: [2444209] (in reverse order)
[2025-07-26 21:21:43] 2025-07-27 01:21:12,435 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 21:21:43] 2025-07-27 01:21:12,435 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 21:21:43] 2025-07-27 01:21:12,457 | INFO     | did not find any defunct processes belonging to 2444209
[2025-07-26 21:21:43] 2025-07-27 01:21:12,477 | INFO     | did not find any defunct processes belonging to 2444209
[2025-07-26 21:21:43] 2025-07-27 01:21:12,478 | INFO     | ready for new job
[2025-07-26 21:21:43] 2025-07-27 01:21:12,478 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 21:21:43] 2025-07-27 01:21:12,480 | INFO     | ***************************************
[2025-07-26 21:21:43] 2025-07-27 01:21:12,480 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 21:21:43] 2025-07-27 01:21:12,480 | INFO     | ***************************************
[2025-07-26 21:21:43] 2025-07-27 01:21:12,480 | INFO     | 
[2025-07-26 21:21:43] 2025-07-27 01:21:12,505 | INFO     | architecture information:
[2025-07-26 21:21:43] 2025-07-27 01:21:12,505 | INFO     | executing command: cat /etc/os-release
[2025-07-26 21:21:43] 2025-07-27 01:21:12,531 | INFO     | cat /etc/os-release:
[2025-07-26 21:21:43] NAME="CentOS Linux"
[2025-07-26 21:21:43] VERSION="7 (Core)"
[2025-07-26 21:21:43] ID="centos"
[2025-07-26 21:21:43] ID_LIKE="rhel fedora"
[2025-07-26 21:21:43] VERSION_ID="7"
[2025-07-26 21:21:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 21:21:43] ANSI_COLOR="0;31"
[2025-07-26 21:21:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 21:21:43] HOME_URL="https://www.centos.org/"
[2025-07-26 21:21:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 21:21:43] 
[2025-07-26 21:21:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 21:21:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 21:21:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 21:21:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 21:21:43] 
[2025-07-26 21:21:43] 2025-07-27 01:21:12,531 | INFO     | ***************************************
[2025-07-26 21:21:43] 2025-07-27 01:21:13,035 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 21:21:43] 2025-07-27 01:21:13,068 | INFO     | sufficient remaining disk space (75944165376 B)
[2025-07-26 21:21:43] 2025-07-27 01:21:13,068 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 21:21:43] 2025-07-27 01:21:13,068 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 21:21:43] 2025-07-27 01:21:13,068 | INFO     | update_server=False
[2025-07-26 21:21:43] 2025-07-27 01:21:13,068 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 21:21:43] 2025-07-27 01:21:13,069 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 21:21:43] 2025-07-27 01:21:13,069 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 21:21:43] 2025-07-27 01:21:13,247 | INFO     | all data control threads have been joined
[2025-07-26 21:21:43] 2025-07-27 01:21:13,438 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 21:21:43] 2025-07-27 01:21:13,438 | INFO     | aborting loop
[2025-07-26 21:21:43] 2025-07-27 01:21:13,441 | INFO     | all job control threads have been joined
[2025-07-26 21:21:43] 2025-07-27 01:21:13,880 | INFO     | all payload control threads have been joined
[2025-07-26 21:21:43] 2025-07-27 01:21:14,073 | INFO     | [job] retrieve thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:14,255 | INFO     | [data] control thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:14,321 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:14,385 | INFO     | [payload] validate_post thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:14,445 | INFO     | [job] job monitor thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:14,447 | INFO     | [job] control thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:14,618 | INFO     | [data] copytool_in thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:14,784 | INFO     | [payload] failed_post thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:14,788 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:14,793 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:14,859 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:14,886 | INFO     | [payload] control thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:15,080 | INFO     | [data] copytool_out thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:15,525 | INFO     | [job] validate thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:15,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 21:21:43] 2025-07-27 01:21:16,670 | INFO     | [job] queue monitor thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:17,089 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 21:21:43] 2025-07-27 01:21:17,728 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140274003437376)>', '<ExcThread(monitor, started 140273262769920)>']
[2025-07-26 21:21:43] 2025-07-27 01:21:22,755 | INFO     | all workflow threads have been joined
[2025-07-26 21:21:43] 2025-07-27 01:21:22,757 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 21:21:43] 2025-07-27 01:21:22,757 | INFO     | traces error code: 0
[2025-07-26 21:21:43] 2025-07-27 01:21:22,757 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 21:21:43] 2025-07-27 01:21:42,541 | INFO     | PID=2437382 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 21:21:43] 2025-07-27 01:21:42,541 | INFO     | .. there are 20 such processes running
[2025-07-26 21:21:43] 2025-07-27 01:21:42,542 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 21:21:43] 2025-07-27 01:21:42,542 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 21:21:43] 2025-07-27 01:21:42,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 21:21:43] 2025-07-27 01:21:42,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 21:21:43] 2025-07-27 01:21:42,542 | INFO     | [monitor] control thread has ended
[2025-07-26 21:21:43] 2025-07-27 01:21:42,775 [wrapper] ==== pilot stdout END ====
[2025-07-26 21:21:43] 2025-07-27 01:21:42,778 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 21:21:43] 2025-07-27 01:21:42,780 [wrapper] pilotpid: 2437382
[2025-07-26 21:21:43] 2025-07-27 01:21:42,785 [wrapper] Pilot exit status: 0
[2025-07-26 21:21:43] 2025-07-27 01:21:42,803 [wrapper] pandaids: 6745351503
[2025-07-26 21:21:43] 2025-07-27 01:21:42,903 [wrapper] cleanup supervisor_pilot 2925903 2437383
[2025-07-26 21:21:43] 2025-07-27 01:21:42,908 [wrapper] Test setup, not cleaning
[2025-07-26 21:21:43] 2025-07-27 01:21:42,910 [wrapper] apfmon messages muted
[2025-07-26 21:21:43] 2025-07-27 01:21:42,914 [wrapper] ==== wrapper stdout END ====
[2025-07-26 21:21:43] 2025-07-27 01:21:42,917 [wrapper] ==== wrapper stderr END ====
[2025-07-26 21:21:43]  *** Error codes and diagnostics ***
[2025-07-26 21:21:43]     "exeErrorCode": 0,
[2025-07-26 21:21:43]     "exeErrorDiag": "",
[2025-07-26 21:21:43]     "pilotErrorCode": 0,
[2025-07-26 21:21:43]     "pilotErrorDiag": "",
[2025-07-26 21:21:43]  *** Listing of results directory ***
[2025-07-26 21:21:43] total 356140
[2025-07-26 21:21:43] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 13:41 pilot3.tar.gz
[2025-07-26 21:21:43] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 14:02 queuedata.json
[2025-07-26 21:21:43] -rwx------. 1 boincer umatlas     36292 Jul 26 14:02 runpilot2-wrapper.sh
[2025-07-26 21:21:43] -rw-r--r--. 1 boincer umatlas       100 Jul 26 19:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 21:21:43] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 19:15 run_atlas
[2025-07-26 21:21:43] -rw-r--r--. 1 boincer umatlas       105 Jul 26 19:15 job.xml
[2025-07-26 21:21:43] -rw-r--r--. 2 boincer umatlas 145425947 Jul 26 19:15 EVNT.45743347._002371.pool.root.1
[2025-07-26 21:21:43] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 19:15 start_atlas.sh
[2025-07-26 21:21:43] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 19:15 shared
[2025-07-26 21:21:43] -rw-r--r--. 2 boincer umatlas    542897 Jul 26 19:15 input.tar.gz
[2025-07-26 21:21:43] -rw-r--r--. 1 boincer umatlas         0 Jul 26 19:15 boinc_lockfile
[2025-07-26 21:21:43] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 19:15 pandaJob.out
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas    980125 Jul 26 19:15 agis_schedconf.cvmfs.json
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas   1593052 Jul 26 19:15 agis_ddmendpoints.agis.ALL.json
[2025-07-26 21:21:43] drwx------. 4 boincer umatlas      4096 Jul 26 19:15 pilot3
[2025-07-26 21:21:43] -rw-r--r--. 1 boincer umatlas      6933 Jul 26 21:19 init_data.xml
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas 213338540 Jul 26 21:20 HITS.45743349._042090.pool.root.1
[2025-07-26 21:21:43] -rw-r--r--. 1 boincer umatlas       530 Jul 26 21:20 boinc_task_state.xml
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas      1041 Jul 26 21:20 memory_monitor_summary.json
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas    330829 Jul 26 21:20 log.45743349._042090.job.log.tgz.1
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas        95 Jul 26 21:21 pilot_heartbeat.json
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas      7794 Jul 26 21:21 heartbeat.json
[2025-07-26 21:21:43] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 21:21 boinc_mmap_file
[2025-07-26 21:21:43] -rw-r--r--. 1 boincer umatlas        27 Jul 26 21:21 wrapper_checkpoint.txt
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas       823 Jul 26 21:21 pilotlog.txt
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas    692157 Jul 26 21:21 log.45743349._042090.job.log.1
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas       357 Jul 26 21:21 output.list
[2025-07-26 21:21:43] -rw-r--r--. 1 boincer umatlas       620 Jul 26 21:21 runtime_log
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas   1044480 Jul 26 21:21 result.tar.gz
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas       657 Jul 26 21:21 WgWKDm0Oyz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdmSLDmqcpP2m.diag
[2025-07-26 21:21:43] -rw-r--r--. 1 boincer umatlas      8655 Jul 26 21:21 runtime_log.err
[2025-07-26 21:21:43] -rw-r--r--. 1 boincer umatlas     21241 Jul 26 21:21 stderr.txt
[2025-07-26 21:21:43] HITS file was successfully produced:
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas 213338540 Jul 26 21:20 shared/HITS.pool.root.1
[2025-07-26 21:21:43]  *** Contents of shared directory: ***
[2025-07-26 21:21:43] total 351936
[2025-07-26 21:21:43] -rw-r--r--. 2 boincer umatlas 145425947 Jul 26 19:15 ATLAS.root_0
[2025-07-26 21:21:43] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 19:15 start_atlas.sh
[2025-07-26 21:21:43] -rw-r--r--. 2 boincer umatlas    542897 Jul 26 19:15 input.tar.gz
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas 213338540 Jul 26 21:20 HITS.pool.root.1
[2025-07-26 21:21:43] -rw-------. 1 boincer umatlas   1044480 Jul 26 21:21 result.tar.gz
21:21:44 (2433344): run_atlas exited; CPU time 41635.029681
21:21:44 (2433344): called boinc_finish(0)

</stderr_txt>
]]>

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