Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-27 09:43:03 (1132): Detected: vboxwrapper 26206
2025-07-27 09:43:03 (1132): Detected: BOINC client v8.0.2
2025-07-27 09:43:03 (1132): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-07-27 09:43:03 (1132): Successfully copied 'init_data.xml' to the shared directory.
2025-07-27 09:43:04 (1132): Create VM. (boinc_63fc19545c105c05, slot#0)
2025-07-27 09:43:04 (1132): Setting Memory Size for VM. (4800MB)
2025-07-27 09:43:05 (1132): Setting CPU Count for VM. (8)
2025-07-27 09:43:05 (1132): Setting Chipset Options for VM.
2025-07-27 09:43:05 (1132): Setting Graphics Controller Options for VM.
2025-07-27 09:43:05 (1132): Setting Boot Options for VM.
2025-07-27 09:43:06 (1132): Setting Network Configuration for NAT.
2025-07-27 09:43:06 (1132): Enabling VM Network Access.
2025-07-27 09:43:06 (1132): Disabling USB Support for VM.
2025-07-27 09:43:06 (1132): Disabling COM Port Support for VM.
2025-07-27 09:43:07 (1132): Disabling LPT Port Support for VM.
2025-07-27 09:43:07 (1132): Disabling Audio Support for VM.
2025-07-27 09:43:07 (1132): Disabling Clipboard Support for VM.
2025-07-27 09:43:07 (1132): Disabling Drag and Drop Support for VM.
2025-07-27 09:43:08 (1132): Adding storage controller(s) to VM.
2025-07-27 09:43:08 (1132): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-27 09:43:09 (1132): Adding VirtualBox Guest Additions to VM.
2025-07-27 09:43:09 (1132): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-27 09:43:09 (1132): forwarding host port 64425 to guest port 80
2025-07-27 09:43:09 (1132): Enabling remote desktop for VM.
2025-07-27 09:43:10 (1132): Required extension pack not installed, remote desktop not enabled.
2025-07-27 09:43:10 (1132): Enabling shared directory for VM.
2025-07-27 09:43:10 (1132): Starting VM using VBoxManage interface. (boinc_63fc19545c105c05, slot#0)
2025-07-27 09:43:17 (1132): Successfully started VM. (PID = '9448')
2025-07-27 09:43:17 (1132): Reporting VM Process ID to BOINC.
2025-07-27 09:43:17 (1132): Guest Log: BIOS: VirtualBox 7.1.6
2025-07-27 09:43:17 (1132): Guest Log: CPUID EDX: 0x178bfbff
2025-07-27 09:43:17 (1132): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-27 09:43:17 (1132): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-27 09:43:17 (1132): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-27 09:43:17 (1132): Detected: Web Application Enabled (http://localhost:64425)
2025-07-27 09:43:17 (1132): Preference change detected
2025-07-27 09:43:17 (1132): Setting CPU throttle for VM. (40%)
2025-07-27 09:43:18 (1132): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-27 09:43:19 (1132): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-27 09:43:19 (1132): Guest Log: BIOS: Booting from Hard Disk...
2025-07-27 09:43:25 (1132): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-27 09:43:25 (1132): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-27 09:43:25 (1132): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-27 09:43:36 (1132): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-27 09:43:36 (1132): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-27 09:44:00 (1132): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-27 09:44:00 (1132): Guest Log: 00:00:00.000318 main     Log opened 2025-07-27T09:43:58.206902000Z
2025-07-27 09:44:00 (1132): Guest Log: 00:00:00.000643 main     OS Product: Linux
2025-07-27 09:44:00 (1132): Guest Log: 00:00:00.000775 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-27 09:44:00 (1132): Guest Log: 00:00:00.000864 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-27 09:44:00 (1132): Guest Log: 00:00:00.000947 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-27 09:44:00 (1132): Guest Log: 00:00:00.000949 main     Process ID: 1375
2025-07-27 09:44:00 (1132): Guest Log: 00:00:00.000951 main     Package type: LINUX_64BITS_GENERIC
2025-07-27 09:44:00 (1132): Guest Log: 00:00:00.003480 main     5.2.32 r132073 started. Verbose level = 0
2025-07-27 09:44:00 (1132): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-27 09:44:00 (1132): Guest Log: [INFO] Mounting shared directory
2025-07-27 09:44:00 (1132): Guest Log: [INFO] Checking for init_data.xml
2025-07-27 09:44:10 (1132): Guest Log: 00:00:10.009121 timesync vgsvcTimeSyncWorker: Radical guest time change: -32 387 805 139 000ns (GuestNow=1 753 577 050 408 218 000 ns GuestLast=1 753 609 438 213 357 000 ns fSetTimeLastLoop=true )
2025-07-27 09:44:15 (1132): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-27 09:44:15 (1132): Guest Log: [INFO] Detected branch: prod
2025-07-27 09:44:16 (1132): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-27 09:44:16 (1132): Guest Log: Copying input files
2025-07-27 09:44:23 (1132): Guest Log: Copied input files into RunAtlas.
2025-07-27 09:44:23 (1132): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-07-27 09:44:23 (1132): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-07-27 09:44:23 (1132): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-07-27 09:44:23 (1132): Guest Log: Further information can be found at the LHC@home message board.
2025-07-27 09:44:37 (1132): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-27 09:44:37 (1132): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-27 09:44:37 (1132): Guest Log: 2.6.3.0 1676 0 32208 148794 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-07-27 09:44:39 (1132): Guest Log: copied the webapp to /var/www
2025-07-27 09:44:39 (1132): Guest Log: ATHENA_PROC_NUMBER=8
2025-07-27 09:44:39 (1132): Guest Log: ATHENA_CORE_NUMBER=8
2025-07-27 09:44:39 (1132): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-27 09:44:39 (1132): Guest Log:  *** Starting ATLAS job. (PandaID=6745351432 taskID=45743349) ***
2025-07-27 11:23:23 (1132): Status Report: Elapsed Time: '6000.000000'
2025-07-27 11:23:23 (1132): Status Report: CPU Time: '13569.796875'
2025-07-27 13:03:29 (1132): Status Report: Elapsed Time: '12000.000000'
2025-07-27 13:03:29 (1132): Status Report: CPU Time: '34941.625000'
2025-07-27 14:43:35 (1132): Status Report: Elapsed Time: '18000.000000'
2025-07-27 14:43:35 (1132): Status Report: CPU Time: '56370.328125'
2025-07-27 14:58:41 (1132): VM state change detected. (old = 'running', new = 'paused')
2025-07-27 14:59:01 (1132): VM state change detected. (old = 'paused', new = 'running')
2025-07-27 15:45:26 (1132): VM state change detected. (old = 'running', new = 'paused')
2025-07-27 15:45:46 (1132): VM state change detected. (old = 'paused', new = 'running')
2025-07-27 16:24:22 (1132): Status Report: Elapsed Time: '24000.000000'
2025-07-27 16:24:22 (1132): Status Report: CPU Time: '77769.625000'
2025-07-27 16:26:59 (1132): VM state change detected. (old = 'running', new = 'paused')
2025-07-27 16:27:20 (1132): VM state change detected. (old = 'paused', new = 'running')
2025-07-27 18:04:50 (1132): Status Report: Elapsed Time: '30000.000000'
2025-07-27 18:04:50 (1132): Status Report: CPU Time: '99130.437500'
2025-07-27 18:57:54 (1132): VM state change detected. (old = 'running', new = 'paused')
2025-07-27 18:58:14 (1132): VM state change detected. (old = 'paused', new = 'running')
2025-07-27 19:18:23 (1132): Guest Log:  *** Job finished ***
2025-07-27 19:18:23 (1132): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:16:46,736 | INFO     | all workflow threads have been joined
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:16:46,737 | INFO     | end of generic workflow (traces error code: 0)
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:16:46,737 | INFO     | traces error code: 0
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:16:46,737 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,115 | INFO     | PID=6028 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,117 | INFO     | found 0 job(s) in 20 queues
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,117 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,118 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,118 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,118 | INFO     | [monitor] control thread has ended
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,311 [wrapper] ==== pilot stdout END ====
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,321 [wrapper] ==== wrapper stdout RESUME ====
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,330 [wrapper] pilotpid: 6028
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,338 [wrapper] Pilot exit status: 0
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,436 [wrapper] pandaids: 6745351432
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,513 [wrapper] cleanup supervisor_pilot 25005 6029
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,524 [wrapper] Test setup, not cleaning
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,532 [wrapper] apfmon messages muted
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,541 [wrapper] ==== wrapper stdout END ====
2025-07-27 19:18:23 (1132): Guest Log: 2025-07-27 10:17:07,548 [wrapper] ==== wrapper stderr END ====
2025-07-27 19:18:23 (1132): Guest Log:  *** Error codes and diagnostics ***
2025-07-27 19:18:23 (1132): Guest Log:     "exeErrorCode": 0,
2025-07-27 19:18:23 (1132): Guest Log:     "exeErrorDiag": "",
2025-07-27 19:18:23 (1132): Guest Log:     "pilotErrorCode": 0,
2025-07-27 19:18:23 (1132): Guest Log:     "pilotErrorDiag": "",
2025-07-27 19:18:23 (1132): Guest Log:  *** Listing of results directory ***
2025-07-27 19:18:23 (1132): Guest Log: total 213632
2025-07-27 19:18:23 (1132): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 26 17:41 pilot3.tar.gz
2025-07-27 19:18:23 (1132): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 26 17:56 queuedata.json
2025-07-27 19:18:23 (1132): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 26 17:56 runpilot2-wrapper.sh
2025-07-27 19:18:23 (1132): Guest Log: -rwxr-xr-x. 1 atlas atlas      6129 Jul 27 00:44 init_data.xml
2025-07-27 19:18:23 (1132): Guest Log: -rwxr-xr-x. 1 atlas atlas    542895 Jul 27 00:44 input.tar.gz
2025-07-27 19:18:23 (1132): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 27 00:44 start_atlas.sh
2025-07-27 19:18:23 (1132): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 27 00:44 EVNT.45743347._002366.pool.root.1 -> /data/./ATLAS.root_0
2025-07-27 19:18:23 (1132): Guest Log: -rw-r--r--. 1 atlas atlas      2563 Jul 27 00:44 pandaJob.out
2025-07-27 19:18:23 (1132): Guest Log: -rw-------. 1 atlas atlas    980117 Jul 27 00:46 agis_schedconf.cvmfs.json
2025-07-27 19:18:23 (1132): Guest Log: drwx------. 4 atlas atlas      4096 Jul 27 00:46 pilot3
2025-07-27 19:18:23 (1132): Guest Log: -rw-------. 1 atlas atlas 210345840 Jul 27 10:14 HITS.45743349._042019.pool.root.1
2025-07-27 19:18:23 (1132): Guest Log: -rw-------. 1 atlas atlas      1030 Jul 27 10:15 memory_monitor_summary.json
2025-07-27 19:18:23 (1132): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 27 10:15 agis_ddmendpoints.agis.ALL.json
2025-07-27 19:18:23 (1132): Guest Log: -rw-------. 1 atlas atlas    493709 Jul 27 10:15 log.45743349._042019.job.log.tgz.1
2025-07-27 19:18:23 (1132): Guest Log: -rw-------. 1 atlas atlas      7797 Jul 27 10:16 heartbeat.json
2025-07-27 19:18:23 (1132): Guest Log: -rw-------. 1 atlas atlas        95 Jul 27 10:17 pilot_heartbeat.json
2025-07-27 19:18:23 (1132): Guest Log: -rw-------. 1 atlas atlas       744 Jul 27 10:17 pilotlog.txt
2025-07-27 19:18:23 (1132): Guest Log: -rw-------. 1 atlas atlas   1810172 Jul 27 10:17 log.45743349._042019.job.log.1
2025-07-27 19:18:23 (1132): Guest Log: -rw-------. 1 atlas atlas       357 Jul 27 10:17 output.list
2025-07-27 19:18:23 (1132): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 27 10:17 runtime_log
2025-07-27 19:18:23 (1132): Guest Log: -rw-------. 1 atlas atlas   2324480 Jul 27 10:17 result.tar.gz
2025-07-27 19:18:23 (1132): Guest Log: -rw-------. 1 atlas atlas       660 Jul 27 10:17 DXQKDmmJyz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTlSLDm9OjIpn.diag
2025-07-27 19:18:23 (1132): Guest Log: -rw-r--r--. 1 atlas atlas      8587 Jul 27 10:17 runtime_log.err
2025-07-27 19:18:23 (1132): Guest Log: Looking for outputfile HITS.45743349._042019.pool.root.1
2025-07-27 19:18:23 (1132): Guest Log: HITS file was successfully produced
2025-07-27 19:18:23 (1132): Guest Log: -rw-------. 1 atlas atlas 210345840 Jul 27 10:14 /home/atlas/RunAtlas/HITS.45743349._042019.pool.root.1
2025-07-27 19:18:27 (1132): Guest Log: Successfully finished the ATLAS job!
2025-07-27 19:18:27 (1132): Guest Log: Copying the results back to the shared directory!
2025-07-27 19:18:27 (1132): Guest Log:  *** Contents of shared directory: ***
2025-07-27 19:18:27 (1132): Guest Log: total 432544
2025-07-27 19:18:27 (1132): Guest Log: -rwxrwxrwx. 1 root root 229681760 Jul 27 00:43 ATLAS.root_0
2025-07-27 19:18:27 (1132): Guest Log: -rwxrwxrwx. 1 root root 210345840 Jul 27  2025 HITS.pool.root.1
2025-07-27 19:18:27 (1132): Guest Log: -rwxrwxrwx. 1 root root      6129 Jul 27 00:43 init_data.xml
2025-07-27 19:18:27 (1132): Guest Log: -rwxrwxrwx. 1 root root    542895 Jul 26 23:02 input.tar.gz
2025-07-27 19:18:27 (1132): Guest Log: -rwxrwxrwx. 1 root root   2324480 Jul 27  2025 result.tar.gz
2025-07-27 19:18:27 (1132): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 26 23:02 start_atlas.sh
2025-07-27 19:18:27 (1132): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-27 19:18:27 (1132): VM Completion File Detected.
2025-07-27 19:18:27 (1132): Powering off VM.
2025-07-27 19:18:28 (1132): Successfully stopped VM.
2025-07-27 19:18:28 (1132): Deregistering VM. (boinc_63fc19545c105c05, slot#0)
2025-07-27 19:18:28 (1132): Removing network bandwidth throttle group from VM.
2025-07-27 19:18:28 (1132): Removing VM from VirtualBox.
19:18:33 (1132): called boinc_finish(0)

</stderr_txt>
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