Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:41:20 (3258688): wrapper (7.7.26015): starting
18:41:20 (3258688): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 18:41:20] Arguments: --nthreads 8
[2025-07-26 18:41:20] Threads: 8
[2025-07-26 18:41:20] Checking for CVMFS
[2025-07-26 18:41:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 18:41:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 18:41:22] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 18:41:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 18:41:25] 2.12.6.0 3074763 99025 707628 148792 0 71 25966763 32935936 27785 16776704 2 193960615 99.662 223940909 6960 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 18:41:25] CVMFS is ok
[2025-07-26 18:41:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 18:41:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 18:41:25] Further information can be found at the LHC@home message board.
[2025-07-26 18:41:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 18:41:25] Checking for apptainer binary...
[2025-07-26 18:41:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 18:41:25] Running /usr/bin/apptainer --version
[2025-07-26 18:41:25] apptainer version 1.4.1-1.el9
[2025-07-26 18:41:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 18:41:27] c6-12-25-1.aglt2.org
[2025-07-26 18:41:27] apptainer works
[2025-07-26 18:41:27] Set ATHENA_PROC_NUMBER=8
[2025-07-26 18:41:27] Set ATHENA_CORE_NUMBER=8
[2025-07-26 18:41:27] Starting ATLAS job with PandaID=6745502415
[2025-07-26 18:41:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:20:10 (3258688): BOINC client no longer exists - exiting
07:20:10 (3258688): timer handler: client dead, exiting
07:30:53 (1151292): wrapper (7.7.26015): starting
07:30:53 (1151292): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 07:30:53] Arguments: --nthreads 8
[2025-07-27 07:30:53] Threads: 8
[2025-07-27 07:30:53] This job has been restarted, cleaning up previous attempt
[2025-07-27 07:30:53] Checking for CVMFS
[2025-07-27 07:30:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 07:30:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 07:30:55] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 07:30:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 07:30:57] 2.12.6.0 3074763 99795 719356 148811 1 335 32545496 32935936 25545 16776704 2 195059785 99.662 225382990 6975 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-27 07:30:57] CVMFS is ok
[2025-07-27 07:30:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 07:30:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 07:30:57] Further information can be found at the LHC@home message board.
[2025-07-27 07:30:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 07:30:57] Checking for apptainer binary...
[2025-07-27 07:30:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 07:30:58] Running /usr/bin/apptainer --version
[2025-07-27 07:30:58] apptainer version 1.4.1-1.el9
[2025-07-27 07:30:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 07:30:59] c6-12-25-1.aglt2.org
[2025-07-27 07:30:59] apptainer works
[2025-07-27 07:30:59] Set ATHENA_PROC_NUMBER=8
[2025-07-27 07:30:59] Set ATHENA_CORE_NUMBER=8
[2025-07-27 07:31:00] Starting ATLAS job with PandaID=6745502415
[2025-07-27 07:31:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:04:53]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:04:53] 2025-07-27 22:04:15,607 | INFO     | monitor loop #1495: job 0:6745502415 is in state 'finished'
[2025-07-27 18:04:53] 2025-07-27 22:04:15,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:04:53] 2025-07-27 22:04:16,248 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 18:04:53] 2025-07-27 22:04:16,352 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 999.999520833333
[2025-07-27 18:04:53] 2025-07-27 22:04:16,395 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745502415/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:04:53] 2025-07-27 22:04:16,397 | INFO     | extracted standard info from prmon json
[2025-07-27 18:04:53] 2025-07-27 22:04:16,397 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:04:53] 2025-07-27 22:04:16,398 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:04:53] 2025-07-27 22:04:16,399 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:04:53] 2025-07-27 22:04:16,399 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:04:53] 2025-07-27 22:04:16,426 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:04:53] 2025-07-27 22:04:16,429 | INFO     | sum of square deviations: 73189799090.01956
[2025-07-27 18:04:53] 2025-07-27 22:04:16,450 | INFO     | sum of deviations: 411215499642.55396
[2025-07-27 18:04:53] 2025-07-27 22:04:16,451 | INFO     | mean x: 1753634983.6990292
[2025-07-27 18:04:53] 2025-07-27 22:04:16,451 | INFO     | mean y: 2083639.7556634303
[2025-07-27 18:04:53] 2025-07-27 22:04:16,451 | INFO     | -- intersect: -9850681294.405676
[2025-07-27 18:04:53] 2025-07-27 22:04:16,451 | INFO     | intersect: -9850681294.405676
[2025-07-27 18:04:53] 2025-07-27 22:04:16,454 | INFO     | chi2: 6.03803167471766
[2025-07-27 18:04:53] 2025-07-27 22:04:16,456 | INFO     | sum of square deviations: 71427823511.51082
[2025-07-27 18:04:53] 2025-07-27 22:04:16,479 | INFO     | sum of deviations: 477899799381.8325
[2025-07-27 18:04:53] 2025-07-27 22:04:16,479 | INFO     | mean x: 1753634831.203915
[2025-07-27 18:04:53] 2025-07-27 22:04:16,479 | INFO     | mean y: 2089382.1533442088
[2025-07-27 18:04:53] 2025-07-27 22:04:16,480 | INFO     | -- intersect: -11730897748.362938
[2025-07-27 18:04:53] 2025-07-27 22:04:16,480 | INFO     | intersect: -11730897748.362938
[2025-07-27 18:04:53] 2025-07-27 22:04:16,482 | INFO     | chi2: 4.532703433039902
[2025-07-27 18:04:53] 2025-07-27 22:04:16,482 | INFO     | current chi2=4.532703433039902 (change=24.930777491294744 %)
[2025-07-27 18:04:53] 2025-07-27 22:04:16,483 | INFO     | right removable region: 612
[2025-07-27 18:04:53] 2025-07-27 22:04:16,485 | INFO     | sum of square deviations: 71427521680.68842
[2025-07-27 18:04:53] 2025-07-27 22:04:16,508 | INFO     | sum of deviations: 265110912701.48914
[2025-07-27 18:04:53] 2025-07-27 22:04:16,509 | INFO     | mean x: 1753635136.2071779
[2025-07-27 18:04:53] 2025-07-27 22:04:16,509 | INFO     | mean y: 2096271.1615008158
[2025-07-27 18:04:53] 2025-07-27 22:04:16,509 | INFO     | -- intersect: -6506708746.372524
[2025-07-27 18:04:53] 2025-07-27 22:04:16,509 | INFO     | intersect: -6506708746.372524
[2025-07-27 18:04:53] 2025-07-27 22:04:16,512 | INFO     | chi2: 3.1248809962921005
[2025-07-27 18:04:53] 2025-07-27 22:04:16,512 | INFO     | current chi2=3.1248809962921005 (change=48.24669421035753 %)
[2025-07-27 18:04:53] 2025-07-27 22:04:16,514 | INFO     | sum of square deviations: 69693943525.88803
[2025-07-27 18:04:53] 2025-07-27 22:04:16,537 | INFO     | sum of deviations: 189214283692.50024
[2025-07-27 18:04:53] 2025-07-27 22:04:16,537 | INFO     | mean x: 1753635288.7072368
[2025-07-27 18:04:53] 2025-07-27 22:04:16,537 | INFO     | mean y: 2102944.75
[2025-07-27 18:04:53] 2025-07-27 22:04:16,538 | INFO     | -- intersect: -4758896766.614844
[2025-07-27 18:04:53] 2025-07-27 22:04:16,538 | INFO     | intersect: -4758896766.614844
[2025-07-27 18:04:53] 2025-07-27 22:04:16,540 | INFO     | chi2: 2.4248363929857537
[2025-07-27 18:04:53] 2025-07-27 22:04:16,540 | INFO     | current chi2=2.4248363929857537 (change=22.402280411222087 %)
[2025-07-27 18:04:53] 2025-07-27 22:04:16,541 | INFO     | left removable region: 20
[2025-07-27 18:04:53] 2025-07-27 22:04:16,543 | INFO     | sum of square deviations: 64335360454.324394
[2025-07-27 18:04:53] 2025-07-27 22:04:16,564 | INFO     | sum of deviations: 173695685642.18927
[2025-07-27 18:04:53] 2025-07-27 22:04:16,564 | INFO     | mean x: 1753635410.7162163
[2025-07-27 18:04:53] 2025-07-27 22:04:16,565 | INFO     | mean y: 2116545.0844594594
[2025-07-27 18:04:53] 2025-07-27 22:04:16,565 | INFO     | -- intersect: -4732432276.586148
[2025-07-27 18:04:53] 2025-07-27 22:04:16,565 | INFO     | intersect: -4732432276.586148
[2025-07-27 18:04:53] 2025-07-27 22:04:16,567 | INFO     | chi2: 0.4512033173592093
[2025-07-27 18:04:53] 2025-07-27 22:04:16,568 | INFO     | -- intersect: -4732432276.586148
[2025-07-27 18:04:53] 2025-07-27 22:04:16,568 | INFO     | current memory leak: 2.70 B/s (using 592 data points, chi2=0.45)
[2025-07-27 18:04:53] 2025-07-27 22:04:16,570 | INFO     | could have reported an average CPU frequency of 999 MHz (24 samples)
[2025-07-27 18:04:53] 2025-07-27 22:04:16,570 | INFO     | ..............................
[2025-07-27 18:04:53] 2025-07-27 22:04:16,571 | INFO     | . Timing measurements:
[2025-07-27 18:04:53] 2025-07-27 22:04:16,571 | INFO     | . get job = 1 s
[2025-07-27 18:04:53] 2025-07-27 22:04:16,571 | INFO     | . initial setup = 7 s
[2025-07-27 18:04:53] 2025-07-27 22:04:16,571 | INFO     | . payload setup = 68 s
[2025-07-27 18:04:53] 2025-07-27 22:04:16,571 | INFO     | . stage-in = 0 s
[2025-07-27 18:04:53] 2025-07-27 22:04:16,572 | INFO     | . payload execution = 37678 s
[2025-07-27 18:04:53] 2025-07-27 22:04:16,572 | INFO     | . stage-out = 13 s
[2025-07-27 18:04:53] 2025-07-27 22:04:16,572 | INFO     | . log creation = 2 s
[2025-07-27 18:04:53] 2025-07-27 22:04:16,572 | INFO     | ..............................
[2025-07-27 18:04:53] 2025-07-27 22:04:16,816 | INFO     | 
[2025-07-27 18:04:53] 2025-07-27 22:04:16,817 | INFO     | job summary report
[2025-07-27 18:04:53] 2025-07-27 22:04:16,817 | INFO     | --------------------------------------------------
[2025-07-27 18:04:53] 2025-07-27 22:04:16,817 | INFO     | PanDA job id: 6745502415
[2025-07-27 18:04:53] 2025-07-27 22:04:16,818 | INFO     | task id: 45743349
[2025-07-27 18:04:53] 2025-07-27 22:04:16,818 | INFO     | errors: (none)
[2025-07-27 18:04:53] 2025-07-27 22:04:16,818 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:04:53] 2025-07-27 22:04:16,818 | INFO     | pilot state: finished 
[2025-07-27 18:04:53] 2025-07-27 22:04:16,819 | INFO     | transexitcode: 0
[2025-07-27 18:04:53] 2025-07-27 22:04:16,819 | INFO     | exeerrorcode: 0
[2025-07-27 18:04:53] 2025-07-27 22:04:16,819 | INFO     | exeerrordiag: 
[2025-07-27 18:04:53] 2025-07-27 22:04:16,819 | INFO     | exitcode: 0
[2025-07-27 18:04:53] 2025-07-27 22:04:16,823 | INFO     | exitmsg: OK
[2025-07-27 18:04:53] 2025-07-27 22:04:16,824 | INFO     | cpuconsumptiontime: 128709 s
[2025-07-27 18:04:53] 2025-07-27 22:04:16,824 | INFO     | nevents: 400
[2025-07-27 18:04:53] 2025-07-27 22:04:16,824 | INFO     | neventsw: 0
[2025-07-27 18:04:53] 2025-07-27 22:04:16,825 | INFO     | pid: 1187076
[2025-07-27 18:04:53] 2025-07-27 22:04:16,825 | INFO     | pgrp: 1187076
[2025-07-27 18:04:53] 2025-07-27 22:04:16,825 | INFO     | corecount: 8
[2025-07-27 18:04:53] 2025-07-27 22:04:16,825 | INFO     | event service: False
[2025-07-27 18:04:53] 2025-07-27 22:04:16,825 | INFO     | sizes: {0: 2396647, 1: 2397248, 2: 2397332, 3: 2397360, 5: 2397615, 7: 2397615, 18: 2397771, 30: 2397799, 42: 2397827, 46: 2398145, 54: 2398173, 37753: 2438197, 37
[2025-07-27 18:04:53] 2025-07-27 22:04:16,826 | INFO     | --------------------------------------------------
[2025-07-27 18:04:53] 2025-07-27 22:04:16,826 | INFO     | 
[2025-07-27 18:04:53] 2025-07-27 22:04:16,826 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-27 18:04:53] 2025-07-27 22:04:16,879 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,880 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,880 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,880 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,880 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,881 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,881 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,881 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,881 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,882 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,882 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,882 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,882 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,891 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,891 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,892 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,892 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,892 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:04:53] 2025-07-27 22:04:16,892 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,892 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:04:53] 2025-07-27 22:04:16,893 | INFO     | job 6745502415 has completed (purged errors)
[2025-07-27 18:04:53] 2025-07-27 22:04:16,893 | INFO     | overall cleanup function is called
[2025-07-27 18:04:53] 2025-07-27 22:04:17,905 | INFO     | --- collectZombieJob: --- 10, [1187076]
[2025-07-27 18:04:53] 2025-07-27 22:04:17,906 | INFO     | zombie collector waiting for pid 1187076
[2025-07-27 18:04:53] 2025-07-27 22:04:17,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:04:53] 2025-07-27 22:04:17,927 | INFO     | collected zombie processes
[2025-07-27 18:04:53] 2025-07-27 22:04:17,927 | INFO     | will attempt to kill all subprocesses of pid=1187076
[2025-07-27 18:04:53] 2025-07-27 22:04:20,796 | INFO     | process IDs to be killed: [1187076] (in reverse order)
[2025-07-27 18:04:53] 2025-07-27 22:04:21,678 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:04:53] 2025-07-27 22:04:21,679 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:04:53] 2025-07-27 22:04:21,915 | INFO     | did not find any defunct processes belonging to 1187076
[2025-07-27 18:04:53] 2025-07-27 22:04:22,162 | INFO     | did not find any defunct processes belonging to 1187076
[2025-07-27 18:04:53] 2025-07-27 22:04:22,162 | INFO     | ready for new job
[2025-07-27 18:04:53] 2025-07-27 22:04:22,163 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:04:53] 2025-07-27 22:04:22,185 | INFO     | ***************************************
[2025-07-27 18:04:53] 2025-07-27 22:04:22,185 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:04:53] 2025-07-27 22:04:22,186 | INFO     | ***************************************
[2025-07-27 18:04:53] 2025-07-27 22:04:22,186 | INFO     | 
[2025-07-27 18:04:53] 2025-07-27 22:04:22,227 | INFO     | architecture information:
[2025-07-27 18:04:53] 2025-07-27 22:04:22,228 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:04:53] 2025-07-27 22:04:22,398 | INFO     | cat /etc/os-release:
[2025-07-27 18:04:53] NAME="CentOS Linux"
[2025-07-27 18:04:53] VERSION="7 (Core)"
[2025-07-27 18:04:53] ID="centos"
[2025-07-27 18:04:53] ID_LIKE="rhel fedora"
[2025-07-27 18:04:53] VERSION_ID="7"
[2025-07-27 18:04:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:04:53] ANSI_COLOR="0;31"
[2025-07-27 18:04:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:04:53] HOME_URL="https://www.centos.org/"
[2025-07-27 18:04:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:04:53] 
[2025-07-27 18:04:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:04:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:04:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:04:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:04:53] 
[2025-07-27 18:04:53] 2025-07-27 22:04:22,399 | INFO     | ***************************************
[2025-07-27 18:04:53] 2025-07-27 22:04:22,903 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-27 18:04:53] 2025-07-27 22:04:23,015 | INFO     | sufficient remaining disk space (75642175488 B)
[2025-07-27 18:04:53] 2025-07-27 22:04:23,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:04:53] 2025-07-27 22:04:23,017 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:04:53] 2025-07-27 22:04:23,017 | INFO     | update_server=False
[2025-07-27 18:04:53] 2025-07-27 22:04:23,017 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:04:53] 2025-07-27 22:04:23,197 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-27 18:04:53] 2025-07-27 22:04:23,198 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-27 18:04:53] 2025-07-27 22:04:23,199 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:04:53] 2025-07-27 22:04:23,199 | INFO     | will abort loop
[2025-07-27 18:04:53] 2025-07-27 22:04:23,600 | INFO     | all job control threads have been joined
[2025-07-27 18:04:53] 2025-07-27 22:04:23,853 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:04:53] 2025-07-27 22:04:23,984 | INFO     | all payload control threads have been joined
[2025-07-27 18:04:53] 2025-07-27 22:04:24,026 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:24,093 | INFO     | all data control threads have been joined
[2025-07-27 18:04:53] 2025-07-27 22:04:24,205 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:24,573 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:24,607 | INFO     | [job] control thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:24,669 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:24,675 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:24,677 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:24,678 | INFO     | [job] validate thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:24,681 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:24,681 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:24,702 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:25,001 | INFO     | [payload] control thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:25,100 | INFO     | [data] control thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:25,810 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:04:53] 2025-07-27 22:04:25,855 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:04:53] 2025-07-27 22:04:25,861 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:26,862 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:29,820 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:04:53] 2025-07-27 22:04:29,929 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140594453530432)>', '<ExcThread(monitor, started 140594093463296)>']
[2025-07-27 18:04:53] 2025-07-27 22:04:34,954 | INFO     | all workflow threads have been joined
[2025-07-27 18:04:53] 2025-07-27 22:04:34,955 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:04:53] 2025-07-27 22:04:34,956 | INFO     | traces error code: 0
[2025-07-27 18:04:53] 2025-07-27 22:04:34,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:04:53] 2025-07-27 22:04:51,308 | INFO     | PID=1163243 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:04:53] 2025-07-27 22:04:51,309 | INFO     | .. there are 33 such processes running
[2025-07-27 18:04:53] 2025-07-27 22:04:51,310 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:04:53] 2025-07-27 22:04:51,311 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:04:53] 2025-07-27 22:04:51,311 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:04:53] 2025-07-27 22:04:51,311 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:04:53] 2025-07-27 22:04:51,311 | INFO     | [monitor] control thread has ended
[2025-07-27 18:04:53] 2025-07-27 22:04:52,256 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:04:53] 2025-07-27 22:04:52,261 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:04:53] 2025-07-27 22:04:52,266 [wrapper] pilotpid: 1163243
[2025-07-27 18:04:53] 2025-07-27 22:04:52,272 [wrapper] Pilot exit status: 0
[2025-07-27 18:04:53] 2025-07-27 22:04:52,426 [wrapper] pandaids: 6745502415 6745502415
[2025-07-27 18:04:53] 2025-07-27 22:04:52,655 [wrapper] cleanup supervisor_pilot 3279624 1163245
[2025-07-27 18:04:53] 2025-07-27 22:04:52,665 [wrapper] Test setup, not cleaning
[2025-07-27 18:04:53] 2025-07-27 22:04:52,679 [wrapper] apfmon messages muted
[2025-07-27 18:04:53] 2025-07-27 22:04:52,684 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:04:53] 2025-07-27 22:04:52,693 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:04:53]  *** Error codes and diagnostics ***
[2025-07-27 18:04:53]     "exeErrorCode": 0,
[2025-07-27 18:04:53]     "exeErrorDiag": "",
[2025-07-27 18:04:53]     "pilotErrorCode": 0,
[2025-07-27 18:04:53]     "pilotErrorDiag": "",
[2025-07-27 18:04:53]  *** Listing of results directory ***
[2025-07-27 18:04:53] total 497552
[2025-07-27 18:04:53] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-27 18:04:53] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 16:19 pilot3.tar.gz
[2025-07-27 18:04:53] -rwx------. 1 boincer umatlas     36292 Jul 26 16:25 runpilot2-wrapper.sh
[2025-07-27 18:04:53] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 16:25 queuedata.json
[2025-07-27 18:04:53] -rw-r--r--. 1 boincer umatlas       100 Jul 26 18:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:04:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 18:41 run_atlas
[2025-07-27 18:04:53] -rw-r--r--. 1 boincer umatlas       105 Jul 26 18:41 job.xml
[2025-07-27 18:04:53] -rw-r--r--. 3 boincer umatlas 145669500 Jul 26 18:41 EVNT.45743347._002509.pool.root.1
[2025-07-27 18:04:53] -rw-r--r--. 3 boincer umatlas 145669500 Jul 26 18:41 ATLAS.root_0
[2025-07-27 18:04:53] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 18:41 shared
[2025-07-27 18:04:53] -rw-r--r--. 2 boincer umatlas    542890 Jul 26 18:41 input.tar.gz
[2025-07-27 18:04:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 18:41 start_atlas.sh
[2025-07-27 18:04:53] -rw-r--r--. 1 boincer umatlas         0 Jul 26 18:41 boinc_lockfile
[2025-07-27 18:04:53] -rw-r--r--. 1 boincer umatlas      2563 Jul 27 07:30 pandaJob.out
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas    980109 Jul 27 07:32 agis_schedconf.cvmfs.json
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas 208640671 Jul 27 18:01 HITS.45743349._043944.pool.root.1
[2025-07-27 18:04:53] -rw-r--r--. 1 boincer umatlas       532 Jul 27 18:01 boinc_task_state.xml
[2025-07-27 18:04:53] -rw-r--r--. 1 boincer umatlas      6859 Jul 27 18:02 init_data.xml
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas      1052 Jul 27 18:03 memory_monitor_summary.json
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas   1593052 Jul 27 18:03 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas    549302 Jul 27 18:03 log.45743349._043944.job.log.tgz.1
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas      7870 Jul 27 18:04 heartbeat.json
[2025-07-27 18:04:53] -rw-r--r--. 1 boincer umatlas        29 Jul 27 18:04 wrapper_checkpoint.txt
[2025-07-27 18:04:53] -rw-r--r--. 1 boincer umatlas      8192 Jul 27 18:04 boinc_mmap_file
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas        96 Jul 27 18:04 pilot_heartbeat.json
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas       823 Jul 27 18:04 pilotlog.txt
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas   2263325 Jul 27 18:04 log.45743349._043944.job.log.1
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas       357 Jul 27 18:04 output.list
[2025-07-27 18:04:53] -rw-r--r--. 1 boincer umatlas       620 Jul 27 18:04 runtime_log
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas   2836480 Jul 27 18:04 result.tar.gz
[2025-07-27 18:04:53] -rw-r--r--. 1 boincer umatlas      8756 Jul 27 18:04 runtime_log.err
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas       792 Jul 27 18:04 gNCMDmPd0z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQ2SLDmkoPTnn.diag
[2025-07-27 18:04:53] -rw-r--r--. 1 boincer umatlas     23536 Jul 27 18:04 stderr.txt
[2025-07-27 18:04:53] HITS file was successfully produced:
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas 208640671 Jul 27 18:01 shared/HITS.pool.root.1
[2025-07-27 18:04:53]  *** Contents of shared directory: ***
[2025-07-27 18:04:53] total 349336
[2025-07-27 18:04:53] -rw-r--r--. 3 boincer umatlas 145669500 Jul 26 18:41 ATLAS.root_0
[2025-07-27 18:04:53] -rw-r--r--. 2 boincer umatlas    542890 Jul 26 18:41 input.tar.gz
[2025-07-27 18:04:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 18:41 start_atlas.sh
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas 208640671 Jul 27 18:01 HITS.pool.root.1
[2025-07-27 18:04:53] -rw-------. 1 boincer umatlas   2836480 Jul 27 18:04 result.tar.gz
18:04:54 (1151292): run_atlas exited; CPU time 132194.172330
18:04:54 (1151292): called boinc_finish(0)

</stderr_txt>
]]>

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