Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:41:12 (2541038): wrapper (7.7.26015): starting
05:41:12 (2541038): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 05:41:12] Arguments: --nthreads 12
[2025-07-27 05:41:12] Threads: 12
[2025-07-27 05:41:12] Checking for CVMFS
[2025-07-27 05:41:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 05:41:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 05:41:12] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 05:41:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 05:41:12] 2.9.2.0 1254439 3426 65696 148799 1 57 23161803 36864001 0 130560 0 3199033 99.991 125099 1299 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-27 05:41:12] CVMFS is ok
[2025-07-27 05:41:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 05:41:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 05:41:12] Further information can be found at the LHC@home message board.
[2025-07-27 05:41:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 05:41:12] Checking for apptainer binary...
[2025-07-27 05:41:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 05:41:12] Running /usr/bin/apptainer --version
[2025-07-27 05:41:12] apptainer version 1.4.1-1.1
[2025-07-27 05:41:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 05:41:13] thserv06
[2025-07-27 05:41:13] apptainer works
[2025-07-27 05:41:13] Set ATHENA_PROC_NUMBER=12
[2025-07-27 05:41:13] Set ATHENA_CORE_NUMBER=12
[2025-07-27 05:41:13] Starting ATLAS job with PandaID=6745350584
[2025-07-27 05:41:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 06:52:12]  *** The last 200 lines of the pilot log: ***
[2025-07-27 06:52:12]  is_tar=False
[2025-07-27 06:52:12]  lfn=log.45743349._041502.job.log.tgz.1
[2025-07-27 06:52:12]  mtime=0
[2025-07-27 06:52:12]  protocol_id=None
[2025-07-27 06:52:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 06:52:12]  replicas=None
[2025-07-27 06:52:12]  scope=mc23_13p6TeV
[2025-07-27 06:52:12]  status=None
[2025-07-27 06:52:12]  status_code=0
[2025-07-27 06:52:12]  storage_token=
[2025-07-27 06:52:12]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6745350584/log.45743349._041502.job.log.tgz.1
[2025-07-27 06:52:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e2/11/log.45743349._041502.job.log.tgz.1
[2025-07-27 06:52:12]  workdir=None
[2025-07-27 06:52:12] ]
[2025-07-27 06:52:12] 2025-07-27 04:47:17,794 | INFO     | transferring file log.45743349._041502.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6745350584/log.45743349._041502.job.log.tgz.1 to /local/data/boinc/
[2025-07-27 06:52:12] 2025-07-27 04:47:17,794 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6745350584/log.45743349._041502.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0415
[2025-07-27 06:52:12] 2025-07-27 04:47:17,810 | INFO     | adding to output.list: log.45743349._041502.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e2/11/log.45743349._041502.job.log.tg
[2025-07-27 06:52:12] 2025-07-27 04:47:17,811 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 06:52:12] 2025-07-27 04:47:17,811 | INFO     | summary of transferred files:
[2025-07-27 06:52:12] 2025-07-27 04:47:17,811 | INFO     |  -- lfn=log.45743349._041502.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 06:52:12] 2025-07-27 04:47:17,811 | INFO     | stage-out finished correctly
[2025-07-27 06:52:12] 2025-07-27 04:47:17,861 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 06:52:12] 2025-07-27 04:47:18,084 | INFO     | job 6745350584 has state=finished
[2025-07-27 06:52:12] 2025-07-27 04:47:18,085 | INFO     | preparing for final server update for job 6745350584 in state='finished'
[2025-07-27 06:52:12] 2025-07-27 04:47:18,085 | INFO     | this job has now completed (state=finished)
[2025-07-27 06:52:12] 2025-07-27 04:47:18,086 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 06:52:12] 2025-07-27 04:47:18,086 | INFO     | log transfer has been attempted: DONE
[2025-07-27 06:52:12] 2025-07-27 04:47:18,086 | INFO     | job 6745350584 has finished - writing final server update
[2025-07-27 06:52:12] 2025-07-27 04:47:18,086 | INFO     | total number of processed events: 400 (read)
[2025-07-27 06:52:12] 2025-07-27 04:47:18,087 | INFO     | executing command: lscpu
[2025-07-27 06:52:12] 2025-07-27 04:47:18,119 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 06:52:12] 2025-07-27 04:47:19,590 | WARNING  | process 2551846 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 06:52:12] 2025-07-27 04:47:19,590 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745350584/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 06:52:12] 2025-07-27 04:47:19,693 | INFO     | number of running child processes to parent process 2551846: 1
[2025-07-27 06:52:12] 2025-07-27 04:47:19,694 | INFO     | maximum number of monitored processes: 6
[2025-07-27 06:52:12] 2025-07-27 04:47:22,199 | INFO     | monitor loop #301: job 0:6745350584 is in state 'finished'
[2025-07-27 06:52:12] 2025-07-27 04:47:22,202 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 06:52:12] 2025-07-27 04:47:22,947 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 06:52:12] 2025-07-27 04:47:22,952 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2385.601765624999
[2025-07-27 06:52:12] 2025-07-27 04:47:22,959 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745350584/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 06:52:12] 2025-07-27 04:47:22,959 | INFO     | extracted standard info from prmon json
[2025-07-27 06:52:12] 2025-07-27 04:47:22,959 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 06:52:12] 2025-07-27 04:47:22,959 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 06:52:12] 2025-07-27 04:47:22,960 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 06:52:12] 2025-07-27 04:47:22,960 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 06:52:12] 2025-07-27 04:47:22,961 | INFO     | fitting pss+swap vs Time
[2025-07-27 06:52:12] 2025-07-27 04:47:22,962 | INFO     | sum of square deviations: 60482994.5
[2025-07-27 06:52:12] 2025-07-27 04:47:22,962 | INFO     | sum of deviations: -3934218454.5000005
[2025-07-27 06:52:12] 2025-07-27 04:47:22,962 | INFO     | mean x: 1753589764.5
[2025-07-27 06:52:12] 2025-07-27 04:47:22,962 | INFO     | mean y: 2851309.9137931033
[2025-07-27 06:52:12] 2025-07-27 04:47:22,962 | INFO     | -- intersect: 114068057078.09395
[2025-07-27 06:52:12] 2025-07-27 04:47:22,962 | INFO     | intersect: 114068057078.09395
[2025-07-27 06:52:12] 2025-07-27 04:47:22,962 | INFO     | chi2: 0.08639811930552868
[2025-07-27 06:52:12] 2025-07-27 04:47:22,963 | INFO     | -- intersect: 114068057078.09395
[2025-07-27 06:52:12] 2025-07-27 04:47:22,963 | INFO     | current memory leak: -65.05 B/s (using 58 data points, chi2=0.09)
[2025-07-27 06:52:12] 2025-07-27 04:47:22,963 | INFO     | could have reported an average CPU frequency of 1947 MHz (6 samples)
[2025-07-27 06:52:12] 2025-07-27 04:47:22,963 | INFO     | ..............................
[2025-07-27 06:52:12] 2025-07-27 04:47:22,963 | INFO     | . Timing measurements:
[2025-07-27 06:52:12] 2025-07-27 04:47:22,963 | INFO     | . get job = 0 s
[2025-07-27 06:52:12] 2025-07-27 04:47:22,963 | INFO     | . initial setup = 1 s
[2025-07-27 06:52:12] 2025-07-27 04:47:22,963 | INFO     | . payload setup = 11 s
[2025-07-27 06:52:12] 2025-07-27 04:47:22,963 | INFO     | . stage-in = 0 s
[2025-07-27 06:52:12] 2025-07-27 04:47:22,963 | INFO     | . payload execution = 3918 s
[2025-07-27 06:52:12] 2025-07-27 04:47:22,964 | INFO     | . stage-out = 0 s
[2025-07-27 06:52:12] 2025-07-27 04:47:22,964 | INFO     | . log creation = 0 s
[2025-07-27 06:52:12] 2025-07-27 04:47:22,964 | INFO     | ..............................
[2025-07-27 06:52:12] 2025-07-27 04:47:23,164 | INFO     | 
[2025-07-27 06:52:12] 2025-07-27 04:47:23,164 | INFO     | job summary report
[2025-07-27 06:52:12] 2025-07-27 04:47:23,164 | INFO     | --------------------------------------------------
[2025-07-27 06:52:12] 2025-07-27 04:47:23,164 | INFO     | PanDA job id: 6745350584
[2025-07-27 06:52:12] 2025-07-27 04:47:23,164 | INFO     | task id: 45743349
[2025-07-27 06:52:12] 2025-07-27 04:47:23,165 | INFO     | errors: (none)
[2025-07-27 06:52:12] 2025-07-27 04:47:23,165 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 06:52:12] 2025-07-27 04:47:23,165 | INFO     | pilot state: finished 
[2025-07-27 06:52:12] 2025-07-27 04:47:23,165 | INFO     | transexitcode: 0
[2025-07-27 06:52:12] 2025-07-27 04:47:23,165 | INFO     | exeerrorcode: 0
[2025-07-27 06:52:12] 2025-07-27 04:47:23,165 | INFO     | exeerrordiag: 
[2025-07-27 06:52:12] 2025-07-27 04:47:23,165 | INFO     | exitcode: 0
[2025-07-27 06:52:12] 2025-07-27 04:47:23,165 | INFO     | exitmsg: OK
[2025-07-27 06:52:12] 2025-07-27 04:47:23,165 | INFO     | cpuconsumptiontime: 38747 s
[2025-07-27 06:52:12] 2025-07-27 04:47:23,165 | INFO     | nevents: 400
[2025-07-27 06:52:12] 2025-07-27 04:47:23,165 | INFO     | neventsw: 0
[2025-07-27 06:52:12] 2025-07-27 04:47:23,165 | INFO     | pid: 2551846
[2025-07-27 06:52:12] 2025-07-27 04:47:23,165 | INFO     | pgrp: 2551846
[2025-07-27 06:52:12] 2025-07-27 04:47:23,165 | INFO     | corecount: 12
[2025-07-27 06:52:12] 2025-07-27 04:47:23,166 | INFO     | event service: False
[2025-07-27 06:52:12] 2025-07-27 04:47:23,166 | INFO     | sizes: {0: 2397307, 1: 2397506, 6: 2397768, 12: 2397796, 3933: 2423590, 3935: 2432778, 3940: 2432916}
[2025-07-27 06:52:12] 2025-07-27 04:47:23,166 | INFO     | --------------------------------------------------
[2025-07-27 06:52:12] 2025-07-27 04:47:23,166 | INFO     | 
[2025-07-27 06:52:12] 2025-07-27 04:47:23,166 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-27 06:52:12] 2025-07-27 04:47:23,187 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 06:52:12] 2025-07-27 04:47:23,188 | INFO     | job 6745350584 has completed (purged errors)
[2025-07-27 06:52:12] 2025-07-27 04:47:23,189 | INFO     | overall cleanup function is called
[2025-07-27 06:52:12] 2025-07-27 04:47:24,196 | INFO     | --- collectZombieJob: --- 10, [2551846]
[2025-07-27 06:52:12] 2025-07-27 04:47:24,196 | INFO     | zombie collector waiting for pid 2551846
[2025-07-27 06:52:12] 2025-07-27 04:47:24,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 06:52:12] 2025-07-27 04:47:24,196 | INFO     | collected zombie processes
[2025-07-27 06:52:12] 2025-07-27 04:47:24,196 | INFO     | will attempt to kill all subprocesses of pid=2551846
[2025-07-27 06:52:12] 2025-07-27 04:47:24,404 | INFO     | process IDs to be killed: [2551846] (in reverse order)
[2025-07-27 06:52:12] 2025-07-27 04:47:24,442 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 06:52:12] 2025-07-27 04:47:24,442 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 06:52:12] 2025-07-27 04:47:24,445 | INFO     | did not find any defunct processes belonging to 2551846
[2025-07-27 06:52:12] 2025-07-27 04:47:24,447 | INFO     | did not find any defunct processes belonging to 2551846
[2025-07-27 06:52:12] 2025-07-27 04:47:24,447 | INFO     | ready for new job
[2025-07-27 06:52:12] 2025-07-27 04:47:24,447 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 06:52:12] 2025-07-27 04:47:24,448 | INFO     | ***************************************
[2025-07-27 06:52:12] 2025-07-27 04:47:24,448 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 06:52:12] 2025-07-27 04:47:24,448 | INFO     | ***************************************
[2025-07-27 06:52:12] 2025-07-27 04:47:24,448 | INFO     | 
[2025-07-27 06:52:12] 2025-07-27 04:47:24,450 | INFO     | architecture information:
[2025-07-27 06:52:12] 2025-07-27 04:47:24,450 | INFO     | executing command: cat /etc/os-release
[2025-07-27 06:52:12] 2025-07-27 04:47:24,470 | INFO     | cat /etc/os-release:
[2025-07-27 06:52:12] NAME="CentOS Linux"
[2025-07-27 06:52:12] VERSION="7 (Core)"
[2025-07-27 06:52:12] ID="centos"
[2025-07-27 06:52:12] ID_LIKE="rhel fedora"
[2025-07-27 06:52:12] VERSION_ID="7"
[2025-07-27 06:52:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 06:52:12] ANSI_COLOR="0;31"
[2025-07-27 06:52:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 06:52:12] HOME_URL="https://www.centos.org/"
[2025-07-27 06:52:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 06:52:12] 
[2025-07-27 06:52:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 06:52:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 06:52:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 06:52:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 06:52:12] 
[2025-07-27 06:52:12] 2025-07-27 04:47:24,471 | INFO     | ***************************************
[2025-07-27 06:52:12] 2025-07-27 04:47:24,973 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-27 06:52:12] 2025-07-27 04:47:24,995 | INFO     | sufficient remaining disk space (464253878272 B)
[2025-07-27 06:52:12] 2025-07-27 04:47:24,996 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 06:52:12] 2025-07-27 04:47:24,996 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 06:52:12] 2025-07-27 04:47:24,996 | INFO     | update_server=False
[2025-07-27 06:52:12] 2025-07-27 04:47:24,996 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 06:52:12] 2025-07-27 04:47:24,996 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 06:52:12] 2025-07-27 04:47:24,996 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 06:52:12] 2025-07-27 04:47:25,074 | INFO     | all job control threads have been joined
[2025-07-27 06:52:12] 2025-07-27 04:47:25,468 | INFO     | all data control threads have been joined
[2025-07-27 06:52:12] 2025-07-27 04:47:25,712 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 06:52:12] 2025-07-27 04:47:25,712 | INFO     | aborting loop
[2025-07-27 06:52:12] 2025-07-27 04:47:25,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 06:52:12] 2025-07-27 04:47:25,997 | INFO     | [job] retrieve thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:26,001 | INFO     | [job] queue monitor thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:26,078 | INFO     | [payload] failed_post thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:26,079 | INFO     | [job] control thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:26,195 | INFO     | all payload control threads have been joined
[2025-07-27 06:52:12] 2025-07-27 04:47:26,218 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:26,274 | INFO     | [data] copytool_in thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:26,474 | INFO     | [data] control thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:26,568 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:26,718 | INFO     | [job] job monitor thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:26,797 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:27,013 | INFO     | [job] validate thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:27,201 | INFO     | [payload] control thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:27,229 | INFO     | [payload] validate_post thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:27,269 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:27,886 | INFO     | [data] copytool_out thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:29,007 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 06:52:12] 2025-07-27 04:47:29,801 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139799674251072)>', '<ExcThread(monitor, started 139799392388864)>']
[2025-07-27 06:52:12] 2025-07-27 04:47:34,827 | INFO     | all workflow threads have been joined
[2025-07-27 06:52:12] 2025-07-27 04:47:34,827 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 06:52:12] 2025-07-27 04:47:34,827 | INFO     | traces error code: 0
[2025-07-27 06:52:12] 2025-07-27 04:47:34,827 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 06:52:12] 2025-07-27 04:47:55,327 | INFO     | PID=2544910 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 06:52:12] 2025-07-27 04:47:55,327 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 06:52:12] 2025-07-27 04:47:55,327 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 06:52:12] 2025-07-27 04:47:55,327 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 06:52:12] 2025-07-27 04:47:55,327 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 06:52:12] 2025-07-27 04:47:55,327 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 06:52:12] 2025-07-27 04:47:55,327 | INFO     | [monitor] control thread has ended
[2025-07-27 06:52:12] 2025-07-27 04:47:55,436 [wrapper] ==== pilot stdout END ====
[2025-07-27 06:52:12] 2025-07-27 04:47:55,442 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 06:52:12] 2025-07-27 04:47:55,447 [wrapper] pilotpid: 2544910
[2025-07-27 06:52:12] 2025-07-27 04:47:55,452 [wrapper] Pilot exit status: 0
[2025-07-27 06:52:12] 2025-07-27 04:47:55,466 [wrapper] pandaids: 6745350584
[2025-07-27 06:52:12] 2025-07-27 04:47:55,496 [wrapper] cleanup supervisor_pilot 2562397 2544911
[2025-07-27 06:52:12] 2025-07-27 04:47:55,501 [wrapper] Test setup, not cleaning
[2025-07-27 06:52:12] 2025-07-27 04:47:55,505 [wrapper] apfmon messages muted
[2025-07-27 06:52:12] 2025-07-27 04:47:55,509 [wrapper] ==== wrapper stdout END ====
[2025-07-27 06:52:12] 2025-07-27 04:47:55,514 [wrapper] ==== wrapper stderr END ====
[2025-07-27 06:52:12]  *** Error codes and diagnostics ***
[2025-07-27 06:52:12]     "exeErrorCode": 0,
[2025-07-27 06:52:12]     "exeErrorDiag": "",
[2025-07-27 06:52:12]     "pilotErrorCode": 0,
[2025-07-27 06:52:12]     "pilotErrorDiag": "",
[2025-07-27 06:52:12]  *** Listing of results directory ***
[2025-07-27 06:52:12] total 352448
[2025-07-27 06:52:12] -rw-r--r-- 1 boinc boinc    530466 Jul 26 19:17 pilot3.tar.gz
[2025-07-27 06:52:12] -rw-r--r-- 1 boinc boinc      5112 Jul 26 19:21 queuedata.json
[2025-07-27 06:52:12] -rwx------ 1 boinc boinc     36292 Jul 26 19:22 runpilot2-wrapper.sh
[2025-07-27 06:52:12] -rw-r--r-- 1 boinc boinc       100 Jul 27 05:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 06:52:12] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 05:41 run_atlas
[2025-07-27 06:52:12] -rw-r--r-- 1 boinc boinc       105 Jul 27 05:41 job.xml
[2025-07-27 06:52:12] -rw-r--r-- 2 boinc boinc 147061771 Jul 27 05:41 EVNT.45743347._002343.pool.root.1
[2025-07-27 06:52:12] drwxrwx--x 2 boinc boinc      4096 Jul 27 05:41 shared
[2025-07-27 06:52:12] -rw-r--r-- 2 boinc boinc    542897 Jul 27 05:41 input.tar.gz
[2025-07-27 06:52:12] -rw-r--r-- 2 boinc boinc     15095 Jul 27 05:41 start_atlas.sh
[2025-07-27 06:52:12] -rw-r--r-- 1 boinc boinc         0 Jul 27 05:41 boinc_setup_complete
[2025-07-27 06:52:12] -rw-r--r-- 1 boinc boinc      6413 Jul 27 05:41 init_data.xml
[2025-07-27 06:52:12] -rw-r--r-- 1 boinc boinc         0 Jul 27 05:41 boinc_lockfile
[2025-07-27 06:52:12] -rw-r--r-- 1 boinc boinc      2563 Jul 27 05:41 pandaJob.out
[2025-07-27 06:52:12] -rw------- 1 boinc boinc    980125 Jul 27 05:41 agis_schedconf.cvmfs.json
[2025-07-27 06:52:12] -rw------- 1 boinc boinc   1593052 Jul 27 05:41 agis_ddmendpoints.agis.ALL.json
[2025-07-27 06:52:12] drwx------ 4 boinc boinc      4096 Jul 27 05:41 pilot3
[2025-07-27 06:52:12] -rw------- 1 boinc boinc 208469008 Jul 27 06:46 HITS.45743349._041502.pool.root.1
[2025-07-27 06:52:12] -rw-r--r-- 1 boinc boinc       529 Jul 27 06:46 boinc_task_state.xml
[2025-07-27 06:52:12] -rw------- 1 boinc boinc      1042 Jul 27 06:47 memory_monitor_summary.json
[2025-07-27 06:52:12] -rw------- 1 boinc boinc    357041 Jul 27 06:47 log.45743349._041502.job.log.tgz.1
[2025-07-27 06:52:12] -rw------- 1 boinc boinc      7798 Jul 27 06:47 heartbeat.json
[2025-07-27 06:52:12] -rw------- 1 boinc boinc        95 Jul 27 06:47 pilot_heartbeat.json
[2025-07-27 06:52:12] -rw------- 1 boinc boinc       817 Jul 27 06:47 pilotlog.txt
[2025-07-27 06:52:12] -rw------- 1 boinc boinc    393059 Jul 27 06:47 log.45743349._041502.job.log.1
[2025-07-27 06:52:12] -rw------- 1 boinc boinc       357 Jul 27 06:47 output.list
[2025-07-27 06:52:12] -rw-r--r-- 1 boinc boinc       620 Jul 27 06:47 runtime_log
[2025-07-27 06:52:12] -rw------- 1 boinc boinc    768000 Jul 27 06:47 result.tar.gz
[2025-07-27 06:52:12] -rw-r--r-- 1 boinc boinc      8746 Jul 27 06:47 runtime_log.err
[2025-07-27 06:52:12] -rw------- 1 boinc boinc       664 Jul 27 06:47 i3iNDmomxz7n9Rq4apOajLDm4fhM0noT9bVof3QYDm770KDm3hOpMo.diag
[2025-07-27 06:52:12] -rw-r--r-- 1 boinc boinc        26 Jul 27 06:52 wrapper_checkpoint.txt
[2025-07-27 06:52:12] -rw-r--r-- 1 boinc boinc      8192 Jul 27 06:52 boinc_mmap_file
[2025-07-27 06:52:12] -rw-r--r-- 1 boinc boinc     21593 Jul 27 06:52 stderr.txt
[2025-07-27 06:52:12] HITS file was successfully produced:
[2025-07-27 06:52:12] -rw------- 1 boinc boinc 208469008 Jul 27 06:46 shared/HITS.pool.root.1
[2025-07-27 06:52:12]  *** Contents of shared directory: ***
[2025-07-27 06:52:12] total 348508
[2025-07-27 06:52:12] -rw-r--r-- 2 boinc boinc 147061771 Jul 27 05:41 ATLAS.root_0
[2025-07-27 06:52:12] -rw-r--r-- 2 boinc boinc    542897 Jul 27 05:41 input.tar.gz
[2025-07-27 06:52:12] -rw-r--r-- 2 boinc boinc     15095 Jul 27 05:41 start_atlas.sh
[2025-07-27 06:52:12] -rw------- 1 boinc boinc 208469008 Jul 27 06:46 HITS.pool.root.1
[2025-07-27 06:52:12] -rw------- 1 boinc boinc    768000 Jul 27 06:47 result.tar.gz
06:52:14 (2541038): run_atlas exited; CPU time 38768.127905
06:52:14 (2541038): called boinc_finish(0)

</stderr_txt>
]]>

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