Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:35:13 (1540987): wrapper (7.7.26015): starting
18:35:13 (1540987): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 18:35:13] Arguments: --nthreads 8
[2025-07-26 18:35:13] Threads: 8
[2025-07-26 18:35:13] Checking for CVMFS
[2025-07-26 18:35:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 18:35:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 18:35:14] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 18:35:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 18:35:15] 2.13.0.0 112940 26399 203208 148792 0 664 40067039 40960001 30889 16776704 0 217480690 99.662 220753112 30081 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 18:35:15] CVMFS is ok
[2025-07-26 18:35:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 18:35:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 18:35:15] Further information can be found at the LHC@home message board.
[2025-07-26 18:35:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 18:35:15] Checking for apptainer binary...
[2025-07-26 18:35:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 18:35:15] Running /usr/bin/apptainer --version
[2025-07-26 18:35:15] apptainer version 1.4.1-1.el9
[2025-07-26 18:35:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 18:35:15] c8-7-3.aglt2.org
[2025-07-26 18:35:15] apptainer works
[2025-07-26 18:35:16] Set ATHENA_PROC_NUMBER=8
[2025-07-26 18:35:16] Set ATHENA_CORE_NUMBER=8
[2025-07-26 18:35:16] Starting ATLAS job with PandaID=6745229246
[2025-07-26 18:35:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 19:48:21]  *** The last 200 lines of the pilot log: ***
[2025-07-26 19:48:21] 2025-07-26 23:47:31,703 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745229246/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 19:48:21] 2025-07-26 23:47:31,703 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745229246/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 19:48:21] 2025-07-26 23:47:31,704 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2898148 B
[2025-07-26 19:48:21] 2025-07-26 23:47:31,704 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15781 B
[2025-07-26 19:48:21] 2025-07-26 23:47:31,704 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 19:48:21] 2025-07-26 23:47:31,717 | INFO     | sufficient remaining disk space (172253773824 B)
[2025-07-26 19:48:21] 2025-07-26 23:47:31,717 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-26 19:48:21] 2025-07-26 23:47:31,717 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-6745229246: 3194339 B (within 2537553920 B limit)
[2025-07-26 19:48:21] 2025-07-26 23:47:31,718 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-6745229246/HITS.45743349._039317.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-26 19:48:21] 2025-07-26 23:47:31,718 | INFO     | total size of present files: 0 B (workdir size: 3194339 B)
[2025-07-26 19:48:21] 2025-07-26 23:47:31,718 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6745229246/HITS.45743349._039317.pool.root.1 since it does not exist
[2025-07-26 19:48:21] 2025-07-26 23:47:32,107 | INFO     | number of running child processes to parent process 1554253: 1
[2025-07-26 19:48:21] 2025-07-26 23:47:32,107 | INFO     | maximum number of monitored processes: 6
[2025-07-26 19:48:21] 2025-07-26 23:47:32,510 | INFO     | job 6745229246 has state=finished
[2025-07-26 19:48:21] 2025-07-26 23:47:32,510 | INFO     | preparing for final server update for job 6745229246 in state='finished'
[2025-07-26 19:48:21] 2025-07-26 23:47:32,510 | INFO     | this job has now completed (state=finished)
[2025-07-26 19:48:21] 2025-07-26 23:47:32,510 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 19:48:21] 2025-07-26 23:47:32,511 | INFO     | log transfer has been attempted: DONE
[2025-07-26 19:48:21] 2025-07-26 23:47:32,511 | INFO     | job 6745229246 has finished - writing final server update
[2025-07-26 19:48:21] 2025-07-26 23:47:32,511 | INFO     | total number of processed events: 400 (read)
[2025-07-26 19:48:21] 2025-07-26 23:47:32,518 | INFO     | executing command: lscpu
[2025-07-26 19:48:21] 2025-07-26 23:47:32,615 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 19:48:21] 2025-07-26 23:47:34,563 | INFO     | PID=1545410 has CPU usage=13.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-26 19:48:21] 2025-07-26 23:47:34,564 | INFO     | .. there are 28 such processes running
[2025-07-26 19:48:21] 2025-07-26 23:47:34,615 | INFO     | monitor loop #297: job 0:6745229246 is in state 'finished'
[2025-07-26 19:48:21] 2025-07-26 23:47:34,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:48:21] 2025-07-26 23:47:37,122 | INFO     | monitor loop #298: job 0:6745229246 is in state 'finished'
[2025-07-26 19:48:21] 2025-07-26 23:47:37,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:48:21] 2025-07-26 23:47:39,627 | INFO     | monitor loop #299: job 0:6745229246 is in state 'finished'
[2025-07-26 19:48:21] 2025-07-26 23:47:39,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:48:21] 2025-07-26 23:47:42,132 | INFO     | monitor loop #300: job 0:6745229246 is in state 'finished'
[2025-07-26 19:48:21] 2025-07-26 23:47:42,132 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:48:21] 2025-07-26 23:47:44,637 | INFO     | monitor loop #301: job 0:6745229246 is in state 'finished'
[2025-07-26 19:48:21] 2025-07-26 23:47:44,637 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:48:21] 2025-07-26 23:47:47,148 | INFO     | monitor loop #302: job 0:6745229246 is in state 'finished'
[2025-07-26 19:48:21] 2025-07-26 23:47:47,148 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:48:21] 2025-07-26 23:47:47,708 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 19:48:21] 2025-07-26 23:47:47,717 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3683.6673437499994
[2025-07-26 19:48:21] 2025-07-26 23:47:47,745 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745229246/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 19:48:21] 2025-07-26 23:47:47,745 | INFO     | extracted standard info from prmon json
[2025-07-26 19:48:21] 2025-07-26 23:47:47,745 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 19:48:21] 2025-07-26 23:47:47,746 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 19:48:21] 2025-07-26 23:47:47,747 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 19:48:21] 2025-07-26 23:47:47,747 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 19:48:21] 2025-07-26 23:47:47,748 | INFO     | fitting pss+swap vs Time
[2025-07-26 19:48:21] 2025-07-26 23:47:47,748 | INFO     | sum of square deviations: 73882315.5
[2025-07-26 19:48:21] 2025-07-26 23:47:47,749 | INFO     | sum of deviations: -4278096865.500001
[2025-07-26 19:48:21] 2025-07-26 23:47:47,749 | INFO     | mean x: 1753571619.5
[2025-07-26 19:48:21] 2025-07-26 23:47:47,749 | INFO     | mean y: 2272541.919354839
[2025-07-26 19:48:21] 2025-07-26 23:47:47,749 | INFO     | -- intersect: 101541445996.93527
[2025-07-26 19:48:21] 2025-07-26 23:47:47,749 | INFO     | intersect: 101541445996.93527
[2025-07-26 19:48:21] 2025-07-26 23:47:47,749 | INFO     | chi2: 0.027810946159093228
[2025-07-26 19:48:21] 2025-07-26 23:47:47,749 | INFO     | -- intersect: 101541445996.93527
[2025-07-26 19:48:21] 2025-07-26 23:47:47,749 | INFO     | current memory leak: -57.90 B/s (using 62 data points, chi2=0.03)
[2025-07-26 19:48:21] 2025-07-26 23:47:47,749 | INFO     | could have reported an average CPU frequency of 3662 MHz (6 samples)
[2025-07-26 19:48:21] 2025-07-26 23:47:47,749 | INFO     | ..............................
[2025-07-26 19:48:21] 2025-07-26 23:47:47,749 | INFO     | . Timing measurements:
[2025-07-26 19:48:21] 2025-07-26 23:47:47,749 | INFO     | . get job = 0 s
[2025-07-26 19:48:21] 2025-07-26 23:47:47,749 | INFO     | . initial setup = 3 s
[2025-07-26 19:48:21] 2025-07-26 23:47:47,750 | INFO     | . payload setup = 20 s
[2025-07-26 19:48:21] 2025-07-26 23:47:47,750 | INFO     | . stage-in = 0 s
[2025-07-26 19:48:21] 2025-07-26 23:47:47,750 | INFO     | . payload execution = 4204 s
[2025-07-26 19:48:21] 2025-07-26 23:47:47,750 | INFO     | . stage-out = 0 s
[2025-07-26 19:48:21] 2025-07-26 23:47:47,750 | INFO     | . log creation = 0 s
[2025-07-26 19:48:21] 2025-07-26 23:47:47,750 | INFO     | ..............................
[2025-07-26 19:48:21] 2025-07-26 23:47:47,812 | INFO     | 
[2025-07-26 19:48:21] 2025-07-26 23:47:47,812 | INFO     | job summary report
[2025-07-26 19:48:21] 2025-07-26 23:47:47,812 | INFO     | --------------------------------------------------
[2025-07-26 19:48:21] 2025-07-26 23:47:47,812 | INFO     | PanDA job id: 6745229246
[2025-07-26 19:48:21] 2025-07-26 23:47:47,812 | INFO     | task id: 45743349
[2025-07-26 19:48:21] 2025-07-26 23:47:47,812 | INFO     | errors: (none)
[2025-07-26 19:48:21] 2025-07-26 23:47:47,812 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 19:48:21] 2025-07-26 23:47:47,812 | INFO     | pilot state: finished 
[2025-07-26 19:48:21] 2025-07-26 23:47:47,812 | INFO     | transexitcode: 0
[2025-07-26 19:48:21] 2025-07-26 23:47:47,812 | INFO     | exeerrorcode: 0
[2025-07-26 19:48:21] 2025-07-26 23:47:47,812 | INFO     | exeerrordiag: 
[2025-07-26 19:48:21] 2025-07-26 23:47:47,813 | INFO     | exitcode: 0
[2025-07-26 19:48:21] 2025-07-26 23:47:47,813 | INFO     | exitmsg: OK
[2025-07-26 19:48:21] 2025-07-26 23:47:47,813 | INFO     | cpuconsumptiontime: 27862 s
[2025-07-26 19:48:21] 2025-07-26 23:47:47,813 | INFO     | nevents: 400
[2025-07-26 19:48:21] 2025-07-26 23:47:47,813 | INFO     | neventsw: 0
[2025-07-26 19:48:21] 2025-07-26 23:47:47,813 | INFO     | pid: 1554253
[2025-07-26 19:48:21] 2025-07-26 23:47:47,813 | INFO     | pgrp: 1554253
[2025-07-26 19:48:21] 2025-07-26 23:47:47,813 | INFO     | corecount: 8
[2025-07-26 19:48:21] 2025-07-26 23:47:47,813 | INFO     | event service: False
[2025-07-26 19:48:21] 2025-07-26 23:47:47,813 | INFO     | sizes: {0: 2396594, 1: 2397279, 2: 2397478, 12: 2397478, 23: 2397796, 34: 2397796, 4229: 2424037, 4230: 2433035, 4234: 2433091, 4250: 2433313}
[2025-07-26 19:48:21] 2025-07-26 23:47:47,813 | INFO     | --------------------------------------------------
[2025-07-26 19:48:21] 2025-07-26 23:47:47,813 | INFO     | 
[2025-07-26 19:48:21] 2025-07-26 23:47:47,813 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 19:48:21] 2025-07-26 23:47:47,856 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,857 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 19:48:21] 2025-07-26 23:47:47,857 | INFO     | job 6745229246 has completed (purged errors)
[2025-07-26 19:48:21] 2025-07-26 23:47:47,857 | INFO     | overall cleanup function is called
[2025-07-26 19:48:21] 2025-07-26 23:47:48,865 | INFO     | --- collectZombieJob: --- 10, [1554253]
[2025-07-26 19:48:21] 2025-07-26 23:47:48,866 | INFO     | zombie collector waiting for pid 1554253
[2025-07-26 19:48:21] 2025-07-26 23:47:48,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 19:48:21] 2025-07-26 23:47:48,867 | INFO     | collected zombie processes
[2025-07-26 19:48:21] 2025-07-26 23:47:48,867 | INFO     | will attempt to kill all subprocesses of pid=1554253
[2025-07-26 19:48:21] 2025-07-26 23:47:49,331 | INFO     | process IDs to be killed: [1554253] (in reverse order)
[2025-07-26 19:48:21] 2025-07-26 23:47:49,511 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 19:48:21] 2025-07-26 23:47:49,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 19:48:21] 2025-07-26 23:47:49,535 | INFO     | did not find any defunct processes belonging to 1554253
[2025-07-26 19:48:21] 2025-07-26 23:47:49,559 | INFO     | did not find any defunct processes belonging to 1554253
[2025-07-26 19:48:21] 2025-07-26 23:47:49,559 | INFO     | ready for new job
[2025-07-26 19:48:21] 2025-07-26 23:47:49,559 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 19:48:21] 2025-07-26 23:47:49,561 | INFO     | ***************************************
[2025-07-26 19:48:21] 2025-07-26 23:47:49,561 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 19:48:21] 2025-07-26 23:47:49,561 | INFO     | ***************************************
[2025-07-26 19:48:21] 2025-07-26 23:47:49,561 | INFO     | 
[2025-07-26 19:48:21] 2025-07-26 23:47:49,586 | INFO     | architecture information:
[2025-07-26 19:48:21] 2025-07-26 23:47:49,587 | INFO     | executing command: cat /etc/os-release
[2025-07-26 19:48:21] 2025-07-26 23:47:49,615 | INFO     | cat /etc/os-release:
[2025-07-26 19:48:21] NAME="CentOS Linux"
[2025-07-26 19:48:21] VERSION="7 (Core)"
[2025-07-26 19:48:21] ID="centos"
[2025-07-26 19:48:21] ID_LIKE="rhel fedora"
[2025-07-26 19:48:21] VERSION_ID="7"
[2025-07-26 19:48:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 19:48:21] ANSI_COLOR="0;31"
[2025-07-26 19:48:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 19:48:21] HOME_URL="https://www.centos.org/"
[2025-07-26 19:48:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 19:48:21] 
[2025-07-26 19:48:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 19:48:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 19:48:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 19:48:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 19:48:21] 
[2025-07-26 19:48:21] 2025-07-26 23:47:49,619 | INFO     | ***************************************
[2025-07-26 19:48:21] 2025-07-26 23:47:50,122 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 19:48:21] 2025-07-26 23:47:50,144 | INFO     | sufficient remaining disk space (172255870976 B)
[2025-07-26 19:48:21] 2025-07-26 23:47:50,146 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 19:48:21] 2025-07-26 23:47:50,146 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 19:48:21] 2025-07-26 23:47:50,146 | INFO     | update_server=False
[2025-07-26 19:48:21] 2025-07-26 23:47:50,146 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 19:48:21] 2025-07-26 23:47:50,566 | INFO     | all payload control threads have been joined
[2025-07-26 19:48:21] 2025-07-26 23:47:50,659 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 19:48:21] 2025-07-26 23:47:50,659 | INFO     | aborting loop
[2025-07-26 19:48:21] 2025-07-26 23:47:51,000 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 19:48:21] 2025-07-26 23:47:51,152 | INFO     | [job] retrieve thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:47:51,168 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:47:51,231 | INFO     | all data control threads have been joined
[2025-07-26 19:48:21] 2025-07-26 23:47:51,325 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 19:48:21] 2025-07-26 23:47:51,384 | INFO     | all job control threads have been joined
[2025-07-26 19:48:21] 2025-07-26 23:47:51,525 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:47:51,571 | INFO     | [payload] control thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:47:51,665 | INFO     | [job] job monitor thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:47:51,670 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:47:51,755 | INFO     | [payload] validate_post thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:47:51,830 | INFO     | [job] validate thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:47:52,237 | INFO     | [data] control thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:47:52,254 | INFO     | [data] copytool_in thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:47:52,390 | INFO     | [payload] failed_post thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:47:52,391 | INFO     | [job] control thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:47:52,827 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 19:48:21] 2025-07-26 23:47:53,332 | INFO     | [data] copytool_out thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:47:53,835 | INFO     | [job] queue monitor thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:47:55,007 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:48:01,030 | INFO     | job.realtimelogging is not enabled
[2025-07-26 19:48:21] 2025-07-26 23:48:02,037 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 19:48:21] 2025-07-26 23:48:03,905 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139777471874880)>', '<ExcThread(monitor, started 139777110152960)>']
[2025-07-26 19:48:21] 2025-07-26 23:48:08,934 | INFO     | all workflow threads have been joined
[2025-07-26 19:48:21] 2025-07-26 23:48:08,937 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 19:48:21] 2025-07-26 23:48:08,937 | INFO     | traces error code: 0
[2025-07-26 19:48:21] 2025-07-26 23:48:08,937 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 19:48:21] 2025-07-26 23:48:21,235 | INFO     | PID=1545410 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 19:48:21] 2025-07-26 23:48:21,237 | INFO     | .. there are 28 such processes running
[2025-07-26 19:48:21] 2025-07-26 23:48:21,237 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 19:48:21] 2025-07-26 23:48:21,237 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 19:48:21] 2025-07-26 23:48:21,237 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 19:48:21] 2025-07-26 23:48:21,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 19:48:21] 2025-07-26 23:48:21,237 | INFO     | [monitor] control thread has ended
[2025-07-26 19:48:21] 2025-07-26 23:48:21,438 [wrapper] ==== pilot stdout END ====
[2025-07-26 19:48:21] 2025-07-26 23:48:21,451 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 19:48:21] 2025-07-26 23:48:21,454 [wrapper] pilotpid: 1545410
[2025-07-26 19:48:21] 2025-07-26 23:48:21,458 [wrapper] Pilot exit status: 0
[2025-07-26 19:48:21] 2025-07-26 23:48:21,518 [wrapper] pandaids: 6745229246
[2025-07-26 19:48:21] 2025-07-26 23:48:21,644 [wrapper] cleanup supervisor_pilot 1960426 1545411
[2025-07-26 19:48:21] 2025-07-26 23:48:21,646 [wrapper] Test setup, not cleaning
[2025-07-26 19:48:21] 2025-07-26 23:48:21,653 [wrapper] apfmon messages muted
[2025-07-26 19:48:21] 2025-07-26 23:48:21,662 [wrapper] ==== wrapper stdout END ====
[2025-07-26 19:48:21] 2025-07-26 23:48:21,670 [wrapper] ==== wrapper stderr END ====
[2025-07-26 19:48:21]  *** Error codes and diagnostics ***
[2025-07-26 19:48:21]     "exeErrorCode": 0,
[2025-07-26 19:48:21]     "exeErrorDiag": "",
[2025-07-26 19:48:21]     "pilotErrorCode": 0,
[2025-07-26 19:48:21]     "pilotErrorDiag": "",
[2025-07-26 19:48:21]  *** Listing of results directory ***
[2025-07-26 19:48:21] total 440428
[2025-07-26 19:48:21] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 10:04 pilot3.tar.gz
[2025-07-26 19:48:21] -rwx------. 1 boincer umatlas     36292 Jul 26 10:21 runpilot2-wrapper.sh
[2025-07-26 19:48:21] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 10:21 queuedata.json
[2025-07-26 19:48:21] -rw-r--r--. 1 boincer umatlas       100 Jul 26 18:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 19:48:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 18:35 run_atlas
[2025-07-26 19:48:21] -rw-r--r--. 1 boincer umatlas       105 Jul 26 18:35 job.xml
[2025-07-26 19:48:21] -rw-r--r--. 2 boincer umatlas 230670281 Jul 26 18:35 EVNT.45743347._002245.pool.root.1
[2025-07-26 19:48:21] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 18:35 start_atlas.sh
[2025-07-26 19:48:21] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 18:35 shared
[2025-07-26 19:48:21] -rw-r--r--. 2 boincer umatlas    542894 Jul 26 18:35 input.tar.gz
[2025-07-26 19:48:21] -rw-r--r--. 1 boincer umatlas         0 Jul 26 18:35 boinc_lockfile
[2025-07-26 19:48:21] -rw-r--r--. 1 boincer umatlas      2561 Jul 26 18:35 pandaJob.out
[2025-07-26 19:48:21] -rw-------. 1 boincer umatlas    980125 Jul 26 18:36 agis_schedconf.cvmfs.json
[2025-07-26 19:48:21] -rw-------. 1 boincer umatlas   1593052 Jul 26 18:36 agis_ddmendpoints.agis.ALL.json
[2025-07-26 19:48:21] drwx------. 4 boincer umatlas      4096 Jul 26 18:36 pilot3
[2025-07-26 19:48:21] -rw-r--r--. 1 boincer umatlas      7161 Jul 26 19:37 init_data.xml
[2025-07-26 19:48:21] -rw-------. 1 boincer umatlas 215047090 Jul 26 19:46 HITS.45743349._039317.pool.root.1
[2025-07-26 19:48:21] -rw-r--r--. 1 boincer umatlas       530 Jul 26 19:47 boinc_task_state.xml
[2025-07-26 19:48:21] -rw-------. 1 boincer umatlas      1029 Jul 26 19:47 memory_monitor_summary.json
[2025-07-26 19:48:21] -rw-------. 1 boincer umatlas        95 Jul 26 19:47 pilot_heartbeat.json
[2025-07-26 19:48:21] -rw-------. 1 boincer umatlas    289457 Jul 26 19:47 log.45743349._039317.job.log.tgz.1
[2025-07-26 19:48:21] -rw-------. 1 boincer umatlas      7770 Jul 26 19:47 heartbeat.json
[2025-07-26 19:48:21] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 19:48 boinc_mmap_file
[2025-07-26 19:48:21] -rw-r--r--. 1 boincer umatlas        27 Jul 26 19:48 wrapper_checkpoint.txt
[2025-07-26 19:48:21] -rw-------. 1 boincer umatlas       823 Jul 26 19:48 pilotlog.txt
[2025-07-26 19:48:21] -rw-------. 1 boincer umatlas    413436 Jul 26 19:48 log.45743349._039317.job.log.1
[2025-07-26 19:48:21] -rw-------. 1 boincer umatlas       357 Jul 26 19:48 output.list
[2025-07-26 19:48:21] -rw-r--r--. 1 boincer umatlas       620 Jul 26 19:48 runtime_log
[2025-07-26 19:48:21] -rw-------. 1 boincer umatlas    727040 Jul 26 19:48 result.tar.gz
[2025-07-26 19:48:21] -rw-r--r--. 1 boincer umatlas      8650 Jul 26 19:48 runtime_log.err
[2025-07-26 19:48:21] -rw-------. 1 boincer umatlas       651 Jul 26 19:48 BIjKDmaxuz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSLSLDmqoMvvm.diag
[2025-07-26 19:48:21] -rw-r--r--. 1 boincer umatlas     22595 Jul 26 19:48 stderr.txt
[2025-07-26 19:48:21] HITS file was successfully produced:
[2025-07-26 19:48:21] -rw-------. 1 boincer umatlas 215047090 Jul 26 19:46 shared/HITS.pool.root.1
[2025-07-26 19:48:21]  *** Contents of shared directory: ***
[2025-07-26 19:48:22] total 436536
[2025-07-26 19:48:22] -rw-r--r--. 2 boincer umatlas 230670281 Jul 26 18:35 ATLAS.root_0
[2025-07-26 19:48:22] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 18:35 start_atlas.sh
[2025-07-26 19:48:22] -rw-r--r--. 2 boincer umatlas    542894 Jul 26 18:35 input.tar.gz
[2025-07-26 19:48:22] -rw-------. 1 boincer umatlas 215047090 Jul 26 19:46 HITS.pool.root.1
[2025-07-26 19:48:22] -rw-------. 1 boincer umatlas    727040 Jul 26 19:48 result.tar.gz
19:48:23 (1540987): run_atlas exited; CPU time 27976.111071
19:48:23 (1540987): called boinc_finish(0)

</stderr_txt>
]]>

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