Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
16:57:09 (1697900): wrapper (7.7.26015): starting
16:57:09 (1697900): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 16:57:09] Arguments: --nthreads 12
[2025-07-27 16:57:09] Threads: 12
[2025-07-27 16:57:09] Checking for CVMFS
[2025-07-27 16:57:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:57:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:57:09] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:57:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:57:09] 2.13.1.0 50093 7901 75384 148818 3 187 3445877 4096000 1058 130560 0 15812878 99.996 288876 285 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-07-27 16:57:09] CVMFS is ok
[2025-07-27 16:57:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:57:09] Checking for apptainer binary...
[2025-07-27 16:57:09] apptainer is not installed, using version from CVMFS
[2025-07-27 16:57:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:57:09] ryzen7
[2025-07-27 16:57:09] apptainer works
[2025-07-27 16:57:09] Set ATHENA_PROC_NUMBER=12
[2025-07-27 16:57:09] Set ATHENA_CORE_NUMBER=12
[2025-07-27 16:57:09] Starting ATLAS job with PandaID=6745388680
[2025-07-27 16:57:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:29:08]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:29:08]  is_tar=False
[2025-07-27 18:29:08]  lfn=log.45743349._043709.job.log.tgz.1
[2025-07-27 18:29:08]  mtime=0
[2025-07-27 18:29:08]  protocol_id=None
[2025-07-27 18:29:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 18:29:08]  replicas=None
[2025-07-27 18:29:08]  scope=mc23_13p6TeV
[2025-07-27 18:29:08]  status=None
[2025-07-27 18:29:08]  status_code=0
[2025-07-27 18:29:08]  storage_token=
[2025-07-27 18:29:08]  surl=/opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6745388680/log.45743349._043709.job.log.tgz.1
[2025-07-27 18:29:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0d/60/log.45743349._043709.job.log.tgz.1
[2025-07-27 18:29:08]  workdir=None
[2025-07-27 18:29:08] ]
[2025-07-27 18:29:08] 2025-07-27 18:28:30,907 | INFO     | transferring file log.45743349._043709.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6745388680/log.45743349._043709.job.log.tgz.1 t
[2025-07-27 18:29:08] 2025-07-27 18:28:30,907 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6745388680/log.45743349._043709.job.log.tgz.1 /opt/boinc/instance_home
[2025-07-27 18:29:08] 2025-07-27 18:28:30,916 | INFO     | adding to output.list: log.45743349._043709.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0d/60/log.45743349._043709.job.log.tg
[2025-07-27 18:29:08] 2025-07-27 18:28:30,917 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:29:08] 2025-07-27 18:28:30,917 | INFO     | summary of transferred files:
[2025-07-27 18:29:08] 2025-07-27 18:28:30,917 | INFO     |  -- lfn=log.45743349._043709.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:29:08] 2025-07-27 18:28:30,917 | INFO     | stage-out finished correctly
[2025-07-27 18:29:08] 2025-07-27 18:28:31,054 | INFO     | 5478s have passed since pilot start - server update state is 'RUNNING'
[2025-07-27 18:29:08] 2025-07-27 18:28:32,509 | INFO     | monitor loop #405: job 0:6745388680 is in state 'finished'
[2025-07-27 18:29:08] 2025-07-27 18:28:32,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:29:08] 2025-07-27 18:28:33,345 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:29:08] 2025-07-27 18:28:34,590 | INFO     | job 6745388680 has state=finished
[2025-07-27 18:29:08] 2025-07-27 18:28:34,590 | INFO     | preparing for final server update for job 6745388680 in state='finished'
[2025-07-27 18:29:08] 2025-07-27 18:28:34,591 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:29:08] 2025-07-27 18:28:34,591 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:29:08] 2025-07-27 18:28:34,591 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:29:08] 2025-07-27 18:28:34,591 | INFO     | job 6745388680 has finished - writing final server update
[2025-07-27 18:29:08] 2025-07-27 18:28:34,591 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:29:08] 2025-07-27 18:28:34,591 | INFO     | executing command: lscpu
[2025-07-27 18:29:08] 2025-07-27 18:28:34,603 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:29:08] 2025-07-27 18:28:35,010 | INFO     | monitor loop #406: job 0:6745388680 is in state 'finished'
[2025-07-27 18:29:08] 2025-07-27 18:28:35,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:29:08] 2025-07-27 18:28:36,719 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 18:29:08] 2025-07-27 18:28:36,721 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4059.6039375
[2025-07-27 18:29:08] 2025-07-27 18:28:36,723 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6745388680/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:29:08] 2025-07-27 18:28:36,724 | INFO     | extracted standard info from prmon json
[2025-07-27 18:29:08] 2025-07-27 18:28:36,724 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:29:08] 2025-07-27 18:28:36,724 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:29:08] 2025-07-27 18:28:36,724 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:29:08] 2025-07-27 18:28:36,724 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:29:08] 2025-07-27 18:28:36,725 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:29:08] 2025-07-27 18:28:36,726 | INFO     | sum of square deviations: 177275882.0
[2025-07-27 18:29:08] 2025-07-27 18:28:36,726 | INFO     | sum of deviations: -2445117473.0
[2025-07-27 18:29:08] 2025-07-27 18:28:36,726 | INFO     | mean x: 1753638256.0
[2025-07-27 18:29:08] 2025-07-27 18:28:36,726 | INFO     | mean y: 2702276.2771084337
[2025-07-27 18:29:08] 2025-07-27 18:28:36,726 | INFO     | -- intersect: 24190152326.966164
[2025-07-27 18:29:08] 2025-07-27 18:28:36,726 | INFO     | intersect: 24190152326.966164
[2025-07-27 18:29:08] 2025-07-27 18:28:36,726 | INFO     | chi2: 0.013949092340701578
[2025-07-27 18:29:08] 2025-07-27 18:28:36,726 | INFO     | -- intersect: 24190152326.966164
[2025-07-27 18:29:08] 2025-07-27 18:28:36,726 | INFO     | current memory leak: -13.79 B/s (using 83 data points, chi2=0.01)
[2025-07-27 18:29:08] 2025-07-27 18:28:36,727 | INFO     | could have reported an average CPU frequency of 3749 MHz (6 samples)
[2025-07-27 18:29:08] 2025-07-27 18:28:36,727 | INFO     | ..............................
[2025-07-27 18:29:08] 2025-07-27 18:28:36,727 | INFO     | . Timing measurements:
[2025-07-27 18:29:08] 2025-07-27 18:28:36,727 | INFO     | . get job = 0 s
[2025-07-27 18:29:08] 2025-07-27 18:28:36,727 | INFO     | . initial setup = 1 s
[2025-07-27 18:29:08] 2025-07-27 18:28:36,727 | INFO     | . payload setup = 2 s
[2025-07-27 18:29:08] 2025-07-27 18:28:36,727 | INFO     | . stage-in = 0 s
[2025-07-27 18:29:08] 2025-07-27 18:28:36,727 | INFO     | . payload execution = 5457 s
[2025-07-27 18:29:08] 2025-07-27 18:28:36,727 | INFO     | . stage-out = 0 s
[2025-07-27 18:29:08] 2025-07-27 18:28:36,727 | INFO     | . log creation = 0 s
[2025-07-27 18:29:08] 2025-07-27 18:28:36,727 | INFO     | ..............................
[2025-07-27 18:29:08] 2025-07-27 18:28:36,850 | INFO     | 
[2025-07-27 18:29:08] 2025-07-27 18:28:36,850 | INFO     | job summary report
[2025-07-27 18:29:08] 2025-07-27 18:28:36,850 | INFO     | --------------------------------------------------
[2025-07-27 18:29:08] 2025-07-27 18:28:36,850 | INFO     | PanDA job id: 6745388680
[2025-07-27 18:29:08] 2025-07-27 18:28:36,850 | INFO     | task id: 45743349
[2025-07-27 18:29:08] 2025-07-27 18:28:36,850 | INFO     | errors: (none)
[2025-07-27 18:29:08] 2025-07-27 18:28:36,850 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:29:08] 2025-07-27 18:28:36,850 | INFO     | pilot state: finished 
[2025-07-27 18:29:08] 2025-07-27 18:28:36,850 | INFO     | transexitcode: 0
[2025-07-27 18:29:08] 2025-07-27 18:28:36,850 | INFO     | exeerrorcode: 0
[2025-07-27 18:29:08] 2025-07-27 18:28:36,850 | INFO     | exeerrordiag: 
[2025-07-27 18:29:08] 2025-07-27 18:28:36,851 | INFO     | exitcode: 0
[2025-07-27 18:29:08] 2025-07-27 18:28:36,851 | INFO     | exitmsg: OK
[2025-07-27 18:29:08] 2025-07-27 18:28:36,851 | INFO     | cpuconsumptiontime: 28143 s
[2025-07-27 18:29:08] 2025-07-27 18:28:36,851 | INFO     | nevents: 400
[2025-07-27 18:29:08] 2025-07-27 18:28:36,851 | INFO     | neventsw: 0
[2025-07-27 18:29:08] 2025-07-27 18:28:36,851 | INFO     | pid: 1710443
[2025-07-27 18:29:08] 2025-07-27 18:28:36,851 | INFO     | pgrp: 1710443
[2025-07-27 18:29:08] 2025-07-27 18:28:36,851 | INFO     | corecount: 12
[2025-07-27 18:29:08] 2025-07-27 18:28:36,851 | INFO     | event service: False
[2025-07-27 18:29:08] 2025-07-27 18:28:36,851 | INFO     | sizes: {0: 2397447, 1: 2397709, 10: 2397737, 5463: 2424398, 5465: 2433442, 5467: 2433498, 5470: 2433820}
[2025-07-27 18:29:08] 2025-07-27 18:28:36,851 | INFO     | --------------------------------------------------
[2025-07-27 18:29:08] 2025-07-27 18:28:36,851 | INFO     | 
[2025-07-27 18:29:08] 2025-07-27 18:28:36,851 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/0
[2025-07-27 18:29:08] 2025-07-27 18:28:36,862 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,862 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,862 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,863 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:29:08] 2025-07-27 18:28:36,864 | INFO     | job 6745388680 has completed (purged errors)
[2025-07-27 18:29:08] 2025-07-27 18:28:36,864 | INFO     | overall cleanup function is called
[2025-07-27 18:29:08] 2025-07-27 18:28:37,870 | INFO     | --- collectZombieJob: --- 10, [1710443]
[2025-07-27 18:29:08] 2025-07-27 18:28:37,870 | INFO     | zombie collector waiting for pid 1710443
[2025-07-27 18:29:08] 2025-07-27 18:28:37,870 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:29:08] 2025-07-27 18:28:37,870 | INFO     | collected zombie processes
[2025-07-27 18:29:08] 2025-07-27 18:28:37,874 | INFO     | will attempt to kill all subprocesses of pid=1710443
[2025-07-27 18:29:08] 2025-07-27 18:28:37,949 | INFO     | process IDs to be killed: [1710443] (in reverse order)
[2025-07-27 18:29:08] 2025-07-27 18:28:37,979 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:29:08] 2025-07-27 18:28:37,979 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:29:08] 2025-07-27 18:28:37,981 | INFO     | did not find any defunct processes belonging to 1710443
[2025-07-27 18:29:08] 2025-07-27 18:28:37,983 | INFO     | did not find any defunct processes belonging to 1710443
[2025-07-27 18:29:08] 2025-07-27 18:28:37,983 | INFO     | ready for new job
[2025-07-27 18:29:08] 2025-07-27 18:28:37,983 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:29:08] 2025-07-27 18:28:37,984 | INFO     | ***************************************
[2025-07-27 18:29:08] 2025-07-27 18:28:37,984 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:29:08] 2025-07-27 18:28:37,984 | INFO     | ***************************************
[2025-07-27 18:29:08] 2025-07-27 18:28:37,984 | INFO     | 
[2025-07-27 18:29:08] 2025-07-27 18:28:37,985 | INFO     | architecture information:
[2025-07-27 18:29:08] 2025-07-27 18:28:37,985 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:29:08] 2025-07-27 18:28:37,992 | INFO     | cat /etc/os-release:
[2025-07-27 18:29:08] NAME="CentOS Linux"
[2025-07-27 18:29:08] VERSION="7 (Core)"
[2025-07-27 18:29:08] ID="centos"
[2025-07-27 18:29:08] ID_LIKE="rhel fedora"
[2025-07-27 18:29:08] VERSION_ID="7"
[2025-07-27 18:29:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:29:08] ANSI_COLOR="0;31"
[2025-07-27 18:29:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:29:08] HOME_URL="https://www.centos.org/"
[2025-07-27 18:29:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:29:08] 
[2025-07-27 18:29:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:29:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:29:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:29:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:29:08] 
[2025-07-27 18:29:08] 2025-07-27 18:28:37,992 | INFO     | ***************************************
[2025-07-27 18:29:08] 2025-07-27 18:28:38,494 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/0
[2025-07-27 18:29:08] 2025-07-27 18:28:38,501 | INFO     | sufficient remaining disk space (150126723072 B)
[2025-07-27 18:29:08] 2025-07-27 18:28:38,501 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:29:08] 2025-07-27 18:28:38,502 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:29:08] 2025-07-27 18:28:38,502 | INFO     | update_server=False
[2025-07-27 18:29:08] 2025-07-27 18:28:38,502 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:29:08] 2025-07-27 18:28:38,502 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:29:08] 2025-07-27 18:28:38,506 | INFO     | all data control threads have been joined
[2025-07-27 18:29:08] 2025-07-27 18:28:38,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:29:08] 2025-07-27 18:28:38,518 | INFO     | aborting loop
[2025-07-27 18:29:08] 2025-07-27 18:28:38,978 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:29:08] 2025-07-27 18:28:39,386 | INFO     | all job control threads have been joined
[2025-07-27 18:29:08] 2025-07-27 18:28:39,428 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:29:08] 2025-07-27 18:28:39,506 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:39,506 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:39,510 | INFO     | [data] control thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:39,522 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:39,545 | INFO     | all payload control threads have been joined
[2025-07-27 18:29:08] 2025-07-27 18:28:39,842 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:39,910 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:39,974 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:40,282 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:40,383 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:40,390 | INFO     | [job] control thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:40,550 | INFO     | [payload] control thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:40,626 | INFO     | [job] validate thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:40,726 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:40,982 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:43,432 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:48,846 | INFO     | job.realtimelogging is not enabled
[2025-07-27 18:29:08] 2025-07-27 18:28:49,850 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:29:08] 2025-07-27 18:28:50,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139692716549952)>', '<ExcThread(monitor, started 139691932251904)>']
[2025-07-27 18:29:08] 2025-07-27 18:28:55,118 | INFO     | all workflow threads have been joined
[2025-07-27 18:29:08] 2025-07-27 18:28:55,118 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:29:08] 2025-07-27 18:28:55,118 | INFO     | traces error code: 0
[2025-07-27 18:29:08] 2025-07-27 18:28:55,118 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:29:08] 2025-07-27 18:29:08,167 | INFO     | PID=1701633 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:29:08] 2025-07-27 18:29:08,168 | INFO     | .. there are 3 such processes running
[2025-07-27 18:29:08] 2025-07-27 18:29:08,168 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:29:08] 2025-07-27 18:29:08,168 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:29:08] 2025-07-27 18:29:08,168 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:29:08] 2025-07-27 18:29:08,168 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:29:08] 2025-07-27 18:29:08,168 | INFO     | [monitor] control thread has ended
[2025-07-27 18:29:08] 2025-07-27 18:29:08,206 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:29:08] 2025-07-27 18:29:08,207 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:29:08] 2025-07-27 18:29:08,209 [wrapper] pilotpid: 1701633
[2025-07-27 18:29:08] 2025-07-27 18:29:08,210 [wrapper] Pilot exit status: 0
[2025-07-27 18:29:08] 2025-07-27 18:29:08,214 [wrapper] pandaids: 6745388680
[2025-07-27 18:29:08] 2025-07-27 18:29:08,226 [wrapper] cleanup supervisor_pilot 1748903 1701634
[2025-07-27 18:29:08] 2025-07-27 18:29:08,227 [wrapper] Test setup, not cleaning
[2025-07-27 18:29:08] 2025-07-27 18:29:08,229 [wrapper] apfmon messages muted
[2025-07-27 18:29:08] 2025-07-27 18:29:08,230 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:29:08] 2025-07-27 18:29:08,231 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:29:08]  *** Error codes and diagnostics ***
[2025-07-27 18:29:08]     "exeErrorCode": 0,
[2025-07-27 18:29:08]     "exeErrorDiag": "",
[2025-07-27 18:29:08]     "pilotErrorCode": 0,
[2025-07-27 18:29:08]     "pilotErrorDiag": "",
[2025-07-27 18:29:08]  *** Listing of results directory ***
[2025-07-27 18:29:08] total 348380
[2025-07-27 18:29:08] -rw-r--r-- 1 boinc boinc    530466 Jul 26 20:08 pilot3.tar.gz
[2025-07-27 18:29:08] -rwx------ 1 boinc boinc     36292 Jul 26 20:10 runpilot2-wrapper.sh
[2025-07-27 18:29:08] -rw-r--r-- 1 boinc boinc      5112 Jul 26 20:10 queuedata.json
[2025-07-27 18:29:08] -rw-rw-r-- 1 boinc boinc       100 Jul 27 16:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:29:08] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 16:57 run_atlas
[2025-07-27 18:29:08] -rw-rw-r-- 1 boinc boinc       105 Jul 27 16:57 job.xml
[2025-07-27 18:29:08] -rw-r--r-- 2 boinc boinc     15095 Jul 27 16:57 start_atlas.sh
[2025-07-27 18:29:08] drwxrwx--x 2 boinc boinc      4096 Jul 27 16:57 shared
[2025-07-27 18:29:08] -rw-r--r-- 2 boinc boinc    542888 Jul 27 16:57 input.tar.gz
[2025-07-27 18:29:08] -rw-rw-r-- 1 boinc boinc      9702 Jul 27 16:57 init_data.xml
[2025-07-27 18:29:08] -rw-r--r-- 2 boinc boinc 144504085 Jul 27 16:57 EVNT.45743347._002498.pool.root.1
[2025-07-27 18:29:08] -rw-rw-r-- 1 boinc boinc         0 Jul 27 16:57 boinc_lockfile
[2025-07-27 18:29:08] -rw-rw-r-- 1 boinc boinc      2562 Jul 27 16:57 pandaJob.out
[2025-07-27 18:29:08] -rw------- 1 boinc boinc    980125 Jul 27 16:57 agis_schedconf.cvmfs.json
[2025-07-27 18:29:08] -rw------- 1 boinc boinc   1593052 Jul 27 16:57 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:29:08] drwx------ 4 boinc boinc      4096 Jul 27 16:57 pilot3
[2025-07-27 18:29:08] -rw------- 1 boinc boinc 206508478 Jul 27 18:28 HITS.45743349._043709.pool.root.1
[2025-07-27 18:29:08] -rw-rw-r-- 1 boinc boinc       529 Jul 27 18:28 boinc_task_state.xml
[2025-07-27 18:29:08] -rw------- 1 boinc boinc      1017 Jul 27 18:28 memory_monitor_summary.json
[2025-07-27 18:29:08] -rw------- 1 boinc boinc        95 Jul 27 18:28 pilot_heartbeat.json
[2025-07-27 18:29:08] -rw------- 1 boinc boinc    372182 Jul 27 18:28 log.45743349._043709.job.log.tgz.1
[2025-07-27 18:29:08] -rw------- 1 boinc boinc      7731 Jul 27 18:28 heartbeat.json
[2025-07-27 18:29:08] -rw-rw-r-- 1 boinc boinc      8192 Jul 27 18:28 boinc_mmap_file
[2025-07-27 18:29:08] -rw-rw-r-- 1 boinc boinc        27 Jul 27 18:28 wrapper_checkpoint.txt
[2025-07-27 18:29:08] -rw------- 1 boinc boinc       822 Jul 27 18:29 pilotlog.txt
[2025-07-27 18:29:08] -rw------- 1 boinc boinc    550483 Jul 27 18:29 log.45743349._043709.job.log.1
[2025-07-27 18:29:08] -rw------- 1 boinc boinc       357 Jul 27 18:29 output.list
[2025-07-27 18:29:08] -rw-rw-r-- 1 boinc boinc       620 Jul 27 18:29 runtime_log
[2025-07-27 18:29:08] -rw------- 1 boinc boinc    942080 Jul 27 18:29 result.tar.gz
[2025-07-27 18:29:08] -rw-rw-r-- 1 boinc boinc      8954 Jul 27 18:29 runtime_log.err
[2025-07-27 18:29:08] -rw------- 1 boinc boinc       648 Jul 27 18:29 cpdMDmUP0z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2zSLDmbrAzSo.diag
[2025-07-27 18:29:08] -rw-rw-r-- 1 boinc boinc     21370 Jul 27 18:29 stderr.txt
[2025-07-27 18:29:08] HITS file was successfully produced:
[2025-07-27 18:29:08] -rw------- 1 boinc boinc 206508478 Jul 27 18:28 shared/HITS.pool.root.1
[2025-07-27 18:29:08]  *** Contents of shared directory: ***
[2025-07-27 18:29:08] total 344268
[2025-07-27 18:29:08] -rw-r--r-- 2 boinc boinc     15095 Jul 27 16:57 start_atlas.sh
[2025-07-27 18:29:08] -rw-r--r-- 2 boinc boinc    542888 Jul 27 16:57 input.tar.gz
[2025-07-27 18:29:08] -rw-r--r-- 2 boinc boinc 144504085 Jul 27 16:57 ATLAS.root_0
[2025-07-27 18:29:08] -rw------- 1 boinc boinc 206508478 Jul 27 18:28 HITS.pool.root.1
[2025-07-27 18:29:08] -rw------- 1 boinc boinc    942080 Jul 27 18:29 result.tar.gz
18:29:09 (1697900): run_atlas exited; CPU time 28171.523238
18:29:09 (1697900): called boinc_finish(0)

</stderr_txt>
]]>

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