Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:26:42 (3189052): wrapper (7.7.26015): starting
18:26:42 (3189052): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 18:26:42] Arguments: --nthreads 8
[2025-07-26 18:26:42] Threads: 8
[2025-07-26 18:26:42] Checking for CVMFS
[2025-07-26 18:26:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 18:26:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 18:26:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 18:26:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 18:26:43] 2.13.1.0 645510 13343 252240 148792 0 196 36758991 40960000 12864 16776704 0 39227130 99.751 41383049 36975 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 18:26:43] CVMFS is ok
[2025-07-26 18:26:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 18:26:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 18:26:43] Further information can be found at the LHC@home message board.
[2025-07-26 18:26:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 18:26:43] Checking for apptainer binary...
[2025-07-26 18:26:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 18:26:43] Running /usr/bin/apptainer --version
[2025-07-26 18:26:43] apptainer version 1.4.1-1.el9
[2025-07-26 18:26:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 18:26:43] c-212-5.aglt2.org
[2025-07-26 18:26:43] apptainer works
[2025-07-26 18:26:43] Set ATHENA_PROC_NUMBER=8
[2025-07-26 18:26:43] Set ATHENA_CORE_NUMBER=8
[2025-07-26 18:26:43] Starting ATLAS job with PandaID=6745133691
[2025-07-26 18:26:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:00:09 (3189052): BOINC client no longer exists - exiting
19:00:09 (3189052): timer handler: client dead, exiting
19:12:42 (3300864): wrapper (7.7.26015): starting
19:12:42 (3300864): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 19:12:42] Arguments: --nthreads 8
[2025-07-26 19:12:42] Threads: 8
[2025-07-26 19:12:42] This job has been restarted, cleaning up previous attempt
[2025-07-26 19:12:42] Checking for CVMFS
[2025-07-26 19:12:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 19:12:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 19:12:42] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 19:12:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 19:12:42] 2.13.1.0 645510 13389 252936 148792 2 196 36759340 40960000 3648 16776704 0 39453307 99.752 41383056 36975 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 19:12:42] CVMFS is ok
[2025-07-26 19:12:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 19:12:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 19:12:42] Further information can be found at the LHC@home message board.
[2025-07-26 19:12:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 19:12:42] Checking for apptainer binary...
[2025-07-26 19:12:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 19:12:42] Running /usr/bin/apptainer --version
[2025-07-26 19:12:42] apptainer version 1.4.1-1.el9
[2025-07-26 19:12:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 19:12:42] c-212-5.aglt2.org
[2025-07-26 19:12:42] apptainer works
[2025-07-26 19:12:42] Set ATHENA_PROC_NUMBER=8
[2025-07-26 19:12:42] Set ATHENA_CORE_NUMBER=8
[2025-07-26 19:12:42] Starting ATLAS job with PandaID=6745133691
[2025-07-26 19:12:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 21:18:11]  *** The last 200 lines of the pilot log: ***
[2025-07-26 21:18:11] 2025-07-27 01:17:37,854 | INFO     | intersect: -15880783649.350756
[2025-07-26 21:18:11] 2025-07-27 01:17:37,854 | INFO     | chi2: 0.02287637927778373
[2025-07-26 21:18:11] 2025-07-27 01:17:37,855 | INFO     | current chi2=0.02287637927778373 (change=98.0324268334717 %)
[2025-07-26 21:18:11] 2025-07-27 01:17:37,855 | INFO     | sum of square deviations: 435610028.0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,856 | INFO     | sum of deviations: 2209609893.0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,856 | INFO     | mean x: 1753575589.5
[2025-07-26 21:18:11] 2025-07-27 01:17:37,856 | INFO     | mean y: 2509591.875
[2025-07-26 21:18:11] 2025-07-27 01:17:37,856 | INFO     | -- intersect: -8892414128.022713
[2025-07-26 21:18:11] 2025-07-27 01:17:37,856 | INFO     | intersect: -8892414128.022713
[2025-07-26 21:18:11] 2025-07-27 01:17:37,856 | INFO     | chi2: 0.0015902548572061137
[2025-07-26 21:18:11] 2025-07-27 01:17:37,856 | INFO     | current chi2=0.0015902548572061137 (change=93.048485348595 %)
[2025-07-26 21:18:11] 2025-07-27 01:17:37,856 | INFO     | sum of square deviations: 379832238.0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,857 | INFO     | sum of deviations: 1516388203.0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,857 | INFO     | mean x: 1753575742.0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,857 | INFO     | mean y: 2511483.7196261683
[2025-07-26 21:18:11] 2025-07-27 01:17:37,857 | INFO     | -- intersect: -6998214895.476686
[2025-07-26 21:18:11] 2025-07-27 01:17:37,857 | INFO     | intersect: -6998214895.476686
[2025-07-26 21:18:11] 2025-07-27 01:17:37,857 | INFO     | chi2: 0.0010261115535908519
[2025-07-26 21:18:11] 2025-07-27 01:17:37,858 | INFO     | current chi2=0.0010261115535908519 (change=35.4750247143652 %)
[2025-07-26 21:18:11] 2025-07-27 01:17:37,858 | INFO     | sum of square deviations: 329031285.5
[2025-07-26 21:18:11] 2025-07-27 01:17:37,862 | INFO     | sum of deviations: 964170575.0000001
[2025-07-26 21:18:11] 2025-07-27 01:17:37,862 | INFO     | mean x: 1753575894.5
[2025-07-26 21:18:11] 2025-07-27 01:17:37,862 | INFO     | mean y: 2513142.117647059
[2025-07-26 21:18:11] 2025-07-27 01:17:37,862 | INFO     | -- intersect: -5136044657.749091
[2025-07-26 21:18:11] 2025-07-27 01:17:37,862 | INFO     | intersect: -5136044657.749091
[2025-07-26 21:18:11] 2025-07-27 01:17:37,863 | INFO     | chi2: 0.000581859333839373
[2025-07-26 21:18:11] 2025-07-27 01:17:37,863 | INFO     | current chi2=0.000581859333839373 (change=43.29472933004499 %)
[2025-07-26 21:18:11] 2025-07-27 01:17:37,863 | INFO     | sum of square deviations: 282974608.0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,863 | INFO     | sum of deviations: 547443890.0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,863 | INFO     | mean x: 1753576047.0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,864 | INFO     | mean y: 2514512.06185567
[2025-07-26 21:18:11] 2025-07-27 01:17:37,864 | INFO     | -- intersect: -3389961227.600633
[2025-07-26 21:18:11] 2025-07-27 01:17:37,864 | INFO     | intersect: -3389961227.600633
[2025-07-26 21:18:11] 2025-07-27 01:17:37,864 | INFO     | chi2: 0.00022132722371282399
[2025-07-26 21:18:11] 2025-07-27 01:17:37,864 | INFO     | current chi2=0.00022132722371282399 (change=61.96207384826052 %)
[2025-07-26 21:18:11] 2025-07-27 01:17:37,864 | INFO     | sum of square deviations: 241429643.0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,864 | INFO     | sum of deviations: 408124099.0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,865 | INFO     | mean x: 1753576199.5
[2025-07-26 21:18:11] 2025-07-27 01:17:37,865 | INFO     | mean y: 2515021.8913043477
[2025-07-26 21:18:11] 2025-07-27 01:17:37,865 | INFO     | -- intersect: -2961813208.7095323
[2025-07-26 21:18:11] 2025-07-27 01:17:37,865 | INFO     | intersect: -2961813208.7095323
[2025-07-26 21:18:11] 2025-07-27 01:17:37,865 | INFO     | chi2: 0.00020370426804972597
[2025-07-26 21:18:11] 2025-07-27 01:17:37,865 | INFO     | current chi2=0.00020370426804972597 (change=7.962398555165592 %)
[2025-07-26 21:18:11] 2025-07-27 01:17:37,865 | INFO     | left removable region: 60
[2025-07-26 21:18:11] 2025-07-27 01:17:37,865 | INFO     | sum of square deviations: 54438230.0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,867 | INFO     | sum of deviations: 112622378.49999999
[2025-07-26 21:18:11] 2025-07-27 01:17:37,867 | INFO     | mean x: 1753576931.5
[2025-07-26 21:18:11] 2025-07-27 01:17:37,867 | INFO     | mean y: 2516064.089285714
[2025-07-26 21:18:11] 2025-07-27 01:17:37,867 | INFO     | -- intersect: -3625302197.236653
[2025-07-26 21:18:11] 2025-07-27 01:17:37,868 | INFO     | intersect: -3625302197.236653
[2025-07-26 21:18:11] 2025-07-27 01:17:37,868 | INFO     | chi2: 3.4827273447302376e-05
[2025-07-26 21:18:11] 2025-07-27 01:17:37,868 | INFO     | -- intersect: -3625302197.236653
[2025-07-26 21:18:11] 2025-07-27 01:17:37,868 | INFO     | current memory leak: 2.07 B/s (using 56 data points, chi2=0.00)
[2025-07-26 21:18:11] 2025-07-27 01:17:37,868 | INFO     | could have reported an average CPU frequency of 3296 MHz (8 samples)
[2025-07-26 21:18:11] 2025-07-27 01:17:37,869 | INFO     | ..............................
[2025-07-26 21:18:11] 2025-07-27 01:17:37,869 | INFO     | . Timing measurements:
[2025-07-26 21:18:11] 2025-07-27 01:17:37,869 | INFO     | . get job = 0 s
[2025-07-26 21:18:11] 2025-07-27 01:17:37,869 | INFO     | . initial setup = 0 s
[2025-07-26 21:18:11] 2025-07-27 01:17:37,869 | INFO     | . payload setup = 5 s
[2025-07-26 21:18:11] 2025-07-27 01:17:37,869 | INFO     | . stage-in = 0 s
[2025-07-26 21:18:11] 2025-07-27 01:17:37,869 | INFO     | . payload execution = 7446 s
[2025-07-26 21:18:11] 2025-07-27 01:17:37,869 | INFO     | . stage-out = 1 s
[2025-07-26 21:18:11] 2025-07-27 01:17:37,869 | INFO     | . log creation = 0 s
[2025-07-26 21:18:11] 2025-07-27 01:17:37,869 | INFO     | ..............................
[2025-07-26 21:18:11] 2025-07-27 01:17:37,992 | INFO     | 
[2025-07-26 21:18:11] 2025-07-27 01:17:37,992 | INFO     | job summary report
[2025-07-26 21:18:11] 2025-07-27 01:17:37,992 | INFO     | --------------------------------------------------
[2025-07-26 21:18:11] 2025-07-27 01:17:37,992 | INFO     | PanDA job id: 6745133691
[2025-07-26 21:18:11] 2025-07-27 01:17:37,992 | INFO     | task id: 45743349
[2025-07-26 21:18:11] 2025-07-27 01:17:37,992 | INFO     | errors: (none)
[2025-07-26 21:18:11] 2025-07-27 01:17:37,992 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 21:18:11] 2025-07-27 01:17:37,992 | INFO     | pilot state: finished 
[2025-07-26 21:18:11] 2025-07-27 01:17:37,992 | INFO     | transexitcode: 0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | exeerrorcode: 0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | exeerrordiag: 
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | exitcode: 0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | exitmsg: OK
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | cpuconsumptiontime: 37702 s
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | nevents: 400
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | neventsw: 0
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | pid: 3423644
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | pgrp: 3423644
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | corecount: 8
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | event service: False
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | sizes: {0: 2397475, 3: 2397737, 11: 2397765, 7455: 2425541, 7457: 2434539, 7460: 2434595, 7475: 2434917}
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | --------------------------------------------------
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | 
[2025-07-26 21:18:11] 2025-07-27 01:17:37,993 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-07-26 21:18:11] 2025-07-27 01:17:38,046 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,046 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,047 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,047 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,047 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,047 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,047 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,047 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,047 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,047 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,048 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,049 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,049 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,049 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,049 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,049 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,049 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,049 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 21:18:11] 2025-07-27 01:17:38,049 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,049 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 21:18:11] 2025-07-27 01:17:38,049 | INFO     | job 6745133691 has completed (purged errors)
[2025-07-26 21:18:11] 2025-07-27 01:17:38,050 | INFO     | overall cleanup function is called
[2025-07-26 21:18:11] 2025-07-27 01:17:39,060 | INFO     | --- collectZombieJob: --- 10, [3423644]
[2025-07-26 21:18:11] 2025-07-27 01:17:39,061 | INFO     | zombie collector waiting for pid 3423644
[2025-07-26 21:18:11] 2025-07-27 01:17:39,061 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 21:18:11] 2025-07-27 01:17:39,061 | INFO     | collected zombie processes
[2025-07-26 21:18:11] 2025-07-27 01:17:39,061 | INFO     | will attempt to kill all subprocesses of pid=3423644
[2025-07-26 21:18:11] 2025-07-27 01:17:39,691 | INFO     | process IDs to be killed: [3423644] (in reverse order)
[2025-07-26 21:18:11] 2025-07-27 01:17:39,861 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 21:18:11] 2025-07-27 01:17:39,863 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 21:18:11] 2025-07-27 01:17:39,879 | INFO     | did not find any defunct processes belonging to 3423644
[2025-07-26 21:18:11] 2025-07-27 01:17:39,900 | INFO     | did not find any defunct processes belonging to 3423644
[2025-07-26 21:18:11] 2025-07-27 01:17:39,900 | INFO     | ready for new job
[2025-07-26 21:18:11] 2025-07-27 01:17:39,901 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 21:18:11] 2025-07-27 01:17:39,905 | INFO     | ***************************************
[2025-07-26 21:18:11] 2025-07-27 01:17:39,907 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 21:18:11] 2025-07-27 01:17:39,907 | INFO     | ***************************************
[2025-07-26 21:18:11] 2025-07-27 01:17:39,907 | INFO     | 
[2025-07-26 21:18:11] 2025-07-27 01:17:39,912 | INFO     | architecture information:
[2025-07-26 21:18:11] 2025-07-27 01:17:39,912 | INFO     | executing command: cat /etc/os-release
[2025-07-26 21:18:11] 2025-07-27 01:17:39,940 | INFO     | cat /etc/os-release:
[2025-07-26 21:18:11] NAME="CentOS Linux"
[2025-07-26 21:18:11] VERSION="7 (Core)"
[2025-07-26 21:18:11] ID="centos"
[2025-07-26 21:18:11] ID_LIKE="rhel fedora"
[2025-07-26 21:18:11] VERSION_ID="7"
[2025-07-26 21:18:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 21:18:11] ANSI_COLOR="0;31"
[2025-07-26 21:18:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 21:18:11] HOME_URL="https://www.centos.org/"
[2025-07-26 21:18:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 21:18:11] 
[2025-07-26 21:18:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 21:18:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 21:18:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 21:18:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 21:18:11] 
[2025-07-26 21:18:11] 2025-07-27 01:17:39,941 | INFO     | ***************************************
[2025-07-26 21:18:11] 2025-07-27 01:17:40,444 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-07-26 21:18:11] 2025-07-27 01:17:40,502 | INFO     | sufficient remaining disk space (124713435136 B)
[2025-07-26 21:18:11] 2025-07-27 01:17:40,502 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 21:18:11] 2025-07-27 01:17:40,503 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 21:18:11] 2025-07-27 01:17:40,503 | INFO     | update_server=False
[2025-07-26 21:18:11] 2025-07-27 01:17:40,503 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 21:18:11] 2025-07-27 01:17:40,569 | INFO     | all data control threads have been joined
[2025-07-26 21:18:11] 2025-07-27 01:17:40,671 | INFO     | all payload control threads have been joined
[2025-07-26 21:18:11] 2025-07-27 01:17:40,688 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 21:18:11] 2025-07-27 01:17:40,841 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 21:18:11] 2025-07-27 01:17:40,842 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 21:18:11] 2025-07-27 01:17:40,842 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 21:18:11] 2025-07-27 01:17:40,842 | INFO     | will abort loop
[2025-07-26 21:18:11] 2025-07-27 01:17:41,284 | INFO     | all job control threads have been joined
[2025-07-26 21:18:11] 2025-07-27 01:17:41,508 | INFO     | [job] retrieve thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:41,574 | INFO     | [data] control thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:41,679 | INFO     | [payload] control thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:41,848 | INFO     | [job] job monitor thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:41,861 | INFO     | [payload] validate_post thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:41,894 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:41,951 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:42,091 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:42,166 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 21:18:11] 2025-07-27 01:17:42,245 | INFO     | [data] copytool_in thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:42,289 | INFO     | [job] control thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:42,354 | INFO     | [payload] failed_post thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:42,493 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:42,695 | INFO     | [data] copytool_out thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:42,942 | INFO     | [job] validate thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:43,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 21:18:11] 2025-07-27 01:17:44,012 | INFO     | [job] queue monitor thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:46,175 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 21:18:11] 2025-07-27 01:17:46,788 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140067195352896)>', '<ExcThread(monitor, started 140066693293824)>']
[2025-07-26 21:18:11] 2025-07-27 01:17:51,813 | INFO     | all workflow threads have been joined
[2025-07-26 21:18:11] 2025-07-27 01:17:51,814 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 21:18:11] 2025-07-27 01:17:51,814 | INFO     | traces error code: 0
[2025-07-26 21:18:11] 2025-07-27 01:17:51,814 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 21:18:11] 2025-07-27 01:18:10,850 | INFO     | PID=3345893 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 21:18:11] 2025-07-27 01:18:10,850 | INFO     | .. there are 17 such processes running
[2025-07-26 21:18:11] 2025-07-27 01:18:10,853 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 21:18:11] 2025-07-27 01:18:10,854 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 21:18:11] 2025-07-27 01:18:10,854 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 21:18:11] 2025-07-27 01:18:10,854 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 21:18:11] 2025-07-27 01:18:10,854 | INFO     | [monitor] control thread has ended
[2025-07-26 21:18:11] 2025-07-27 01:18:11,303 [wrapper] ==== pilot stdout END ====
[2025-07-26 21:18:11] 2025-07-27 01:18:11,310 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 21:18:11] 2025-07-27 01:18:11,319 [wrapper] pilotpid: 3345893
[2025-07-26 21:18:11] 2025-07-27 01:18:11,335 [wrapper] Pilot exit status: 0
[2025-07-26 21:18:11] 2025-07-27 01:18:11,395 [wrapper] pandaids: 6745133691 6745133691
[2025-07-26 21:18:11] 2025-07-27 01:18:11,557 [wrapper] cleanup supervisor_pilot 3866730 3345895
[2025-07-26 21:18:11] 2025-07-27 01:18:11,569 [wrapper] Test setup, not cleaning
[2025-07-26 21:18:11] 2025-07-27 01:18:11,594 [wrapper] apfmon messages muted
[2025-07-26 21:18:11] 2025-07-27 01:18:11,610 [wrapper] ==== wrapper stdout END ====
[2025-07-26 21:18:11] 2025-07-27 01:18:11,621 [wrapper] ==== wrapper stderr END ====
[2025-07-26 21:18:11]  *** Error codes and diagnostics ***
[2025-07-26 21:18:11]     "exeErrorCode": 0,
[2025-07-26 21:18:11]     "exeErrorDiag": "",
[2025-07-26 21:18:11]     "pilotErrorCode": 0,
[2025-07-26 21:18:11]     "pilotErrorDiag": "",
[2025-07-26 21:18:11]  *** Listing of results directory ***
[2025-07-26 21:18:11] total 501608
[2025-07-26 21:18:11] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-26 21:18:11] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 07:03 pilot3.tar.gz
[2025-07-26 21:18:11] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 07:05 queuedata.json
[2025-07-26 21:18:11] -rwx------. 1 boincer umatlas     36292 Jul 26 07:05 runpilot2-wrapper.sh
[2025-07-26 21:18:11] -rw-r--r--. 1 boincer umatlas       100 Jul 26 18:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 21:18:11] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 18:26 run_atlas
[2025-07-26 21:18:11] -rw-r--r--. 1 boincer umatlas       105 Jul 26 18:26 job.xml
[2025-07-26 21:18:11] -rw-r--r--. 3 boincer umatlas 146973506 Jul 26 18:26 EVNT.45743347._002093.pool.root.1
[2025-07-26 21:18:11] -rw-r--r--. 3 boincer umatlas 146973506 Jul 26 18:26 ATLAS.root_0
[2025-07-26 21:18:11] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 18:26 start_atlas.sh
[2025-07-26 21:18:11] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 18:26 shared
[2025-07-26 21:18:11] -rw-r--r--. 2 boincer umatlas    542893 Jul 26 18:26 input.tar.gz
[2025-07-26 21:18:11] -rw-r--r--. 1 boincer umatlas         0 Jul 26 18:26 boinc_lockfile
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas   1593052 Jul 26 18:26 agis_ddmendpoints.agis.ALL.json
[2025-07-26 21:18:11] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 19:12 pandaJob.out
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas    980125 Jul 26 19:12 agis_schedconf.cvmfs.json
[2025-07-26 21:18:11] -rw-r--r--. 1 boincer umatlas      6945 Jul 26 21:12 init_data.xml
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas 213741056 Jul 26 21:16 HITS.45743349._036693.pool.root.1
[2025-07-26 21:18:11] -rw-r--r--. 1 boincer umatlas       530 Jul 26 21:16 boinc_task_state.xml
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas      1025 Jul 26 21:17 memory_monitor_summary.json
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas    332517 Jul 26 21:17 log.45743349._036693.job.log.tgz.1
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas      7760 Jul 26 21:17 heartbeat.json
[2025-07-26 21:18:11] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 21:18 boinc_mmap_file
[2025-07-26 21:18:11] -rw-r--r--. 1 boincer umatlas        27 Jul 26 21:18 wrapper_checkpoint.txt
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas        96 Jul 26 21:18 pilot_heartbeat.json
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas       823 Jul 26 21:18 pilotlog.txt
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas    703646 Jul 26 21:18 log.45743349._036693.job.log.1
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas       357 Jul 26 21:18 output.list
[2025-07-26 21:18:11] -rw-r--r--. 1 boincer umatlas       620 Jul 26 21:18 runtime_log
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas   1054720 Jul 26 21:18 result.tar.gz
[2025-07-26 21:18:11] -rw-r--r--. 1 boincer umatlas      8740 Jul 26 21:18 runtime_log.err
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas       776 Jul 26 21:18 9TCLDmwtrz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5uRLDmrWkNvn.diag
[2025-07-26 21:18:11] -rw-r--r--. 1 boincer umatlas     23251 Jul 26 21:18 stderr.txt
[2025-07-26 21:18:11] HITS file was successfully produced:
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas 213741056 Jul 26 21:16 shared/HITS.pool.root.1
[2025-07-26 21:18:11]  *** Contents of shared directory: ***
[2025-07-26 21:18:11] total 353852
[2025-07-26 21:18:11] -rw-r--r--. 3 boincer umatlas 146973506 Jul 26 18:26 ATLAS.root_0
[2025-07-26 21:18:11] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 18:26 start_atlas.sh
[2025-07-26 21:18:11] -rw-r--r--. 2 boincer umatlas    542893 Jul 26 18:26 input.tar.gz
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas 213741056 Jul 26 21:16 HITS.pool.root.1
[2025-07-26 21:18:11] -rw-------. 1 boincer umatlas   1054720 Jul 26 21:18 result.tar.gz
21:18:13 (3300864): run_atlas exited; CPU time 37918.515495
21:18:13 (3300864): called boinc_finish(0)

</stderr_txt>
]]>

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