Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:45:45 (3125642): wrapper (7.7.26015): starting
19:45:45 (3125642): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 19:45:45] Arguments: --nthreads 12
[2025-07-26 19:45:45] Threads: 12
[2025-07-26 19:45:45] Checking for CVMFS
[2025-07-26 19:45:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 19:45:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 19:45:45] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 19:45:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 19:45:45] 2.12.6.0 1267368 17598 325248 148793 2 65 17383446 32935936 7544 16776704 0 32980232 99.697 64007413 29504 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 19:45:45] CVMFS is ok
[2025-07-26 19:45:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 19:45:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 19:45:45] Further information can be found at the LHC@home message board.
[2025-07-26 19:45:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 19:45:45] Checking for apptainer binary...
[2025-07-26 19:45:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 19:45:45] Running /usr/bin/apptainer --version
[2025-07-26 19:45:45] apptainer version 1.4.1-1.el9
[2025-07-26 19:45:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 19:45:46] c6-2-29-3.aglt2.org
[2025-07-26 19:45:46] apptainer works
[2025-07-26 19:45:46] Set ATHENA_PROC_NUMBER=12
[2025-07-26 19:45:46] Set ATHENA_CORE_NUMBER=12
[2025-07-26 19:45:46] Starting ATLAS job with PandaID=6745350573
[2025-07-26 19:45:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 21:09:12]  *** The last 200 lines of the pilot log: ***
[2025-07-26 21:09:12]  status=None
[2025-07-26 21:09:12]  status_code=0
[2025-07-26 21:09:12]  storage_token=
[2025-07-26 21:09:12]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745350573/log.45743349._041491.job.log.tgz.1
[2025-07-26 21:09:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/41/log.45743349._041491.job.log.tgz.1
[2025-07-26 21:09:12]  workdir=None
[2025-07-26 21:09:12] ]
[2025-07-26 21:09:12] 2025-07-27 01:08:30,304 | INFO     | transferring file log.45743349._041491.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745350573/log.45743349._041491.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 21:09:12] 2025-07-27 01:08:30,304 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745350573/log.45743349._041491.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._041491.job
[2025-07-26 21:09:12] 2025-07-27 01:08:30,326 | INFO     | adding to output.list: log.45743349._041491.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ec/41/log.45743349._041491.job.log.tg
[2025-07-26 21:09:12] 2025-07-27 01:08:30,327 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 21:09:12] 2025-07-27 01:08:30,327 | INFO     | summary of transferred files:
[2025-07-26 21:09:12] 2025-07-27 01:08:30,327 | INFO     |  -- lfn=log.45743349._041491.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 21:09:12] 2025-07-27 01:08:30,328 | INFO     | stage-out finished correctly
[2025-07-26 21:09:12] 2025-07-27 01:08:30,620 | WARNING  | process 3137015 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 21:09:12] 2025-07-27 01:08:30,620 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745350573/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 21:09:12] 2025-07-27 01:08:30,863 | INFO     | number of running child processes to parent process 3137015: 1
[2025-07-26 21:09:12] 2025-07-27 01:08:30,864 | INFO     | maximum number of monitored processes: 6
[2025-07-26 21:09:12] 2025-07-27 01:08:31,261 | INFO     | PID=3129255 has CPU usage=11.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-26 21:09:12] 2025-07-27 01:08:31,261 | INFO     | .. there are 14 such processes running
[2025-07-26 21:09:12] 2025-07-27 01:08:31,761 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 21:09:12] 2025-07-27 01:08:33,367 | INFO     | monitor loop #358: job 0:6745350573 is in state 'finished'
[2025-07-26 21:09:12] 2025-07-27 01:08:33,367 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 21:09:12] 2025-07-27 01:08:34,219 | INFO     | job 6745350573 has state=finished
[2025-07-26 21:09:12] 2025-07-27 01:08:34,219 | INFO     | preparing for final server update for job 6745350573 in state='finished'
[2025-07-26 21:09:12] 2025-07-27 01:08:34,220 | INFO     | this job has now completed (state=finished)
[2025-07-26 21:09:12] 2025-07-27 01:08:34,220 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 21:09:12] 2025-07-27 01:08:34,220 | INFO     | log transfer has been attempted: DONE
[2025-07-26 21:09:12] 2025-07-27 01:08:34,220 | INFO     | job 6745350573 has finished - writing final server update
[2025-07-26 21:09:12] 2025-07-27 01:08:34,220 | INFO     | total number of processed events: 400 (read)
[2025-07-26 21:09:12] 2025-07-27 01:08:34,221 | INFO     | executing command: lscpu
[2025-07-26 21:09:12] 2025-07-27 01:08:34,279 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 21:09:12] 2025-07-27 01:08:35,870 | INFO     | monitor loop #359: job 0:6745350573 is in state 'finished'
[2025-07-26 21:09:12] 2025-07-27 01:08:35,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 21:09:12] 2025-07-27 01:08:38,276 | INFO     | 4963s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-26 21:09:12] 2025-07-27 01:08:38,373 | INFO     | monitor loop #360: job 0:6745350573 is in state 'finished'
[2025-07-26 21:09:12] 2025-07-27 01:08:38,373 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 21:09:12] 2025-07-27 01:08:39,223 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 21:09:12] 2025-07-27 01:08:39,227 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2624.545285714286
[2025-07-26 21:09:12] 2025-07-27 01:08:39,236 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745350573/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 21:09:12] 2025-07-27 01:08:39,237 | INFO     | extracted standard info from prmon json
[2025-07-26 21:09:12] 2025-07-27 01:08:39,237 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 21:09:12] 2025-07-27 01:08:39,237 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 21:09:12] 2025-07-27 01:08:39,237 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 21:09:12] 2025-07-27 01:08:39,237 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 21:09:12] 2025-07-27 01:08:39,239 | INFO     | fitting pss+swap vs Time
[2025-07-26 21:09:12] 2025-07-27 01:08:39,240 | INFO     | sum of square deviations: 125631666.48648632
[2025-07-26 21:09:12] 2025-07-27 01:08:39,240 | INFO     | sum of deviations: -11626903552.297297
[2025-07-26 21:09:12] 2025-07-27 01:08:39,240 | INFO     | mean x: 1753576119.5135136
[2025-07-26 21:09:12] 2025-07-27 01:08:39,240 | INFO     | mean y: 2532840.7972972975
[2025-07-26 21:09:12] 2025-07-27 01:08:39,240 | INFO     | -- intersect: 162291715046.2129
[2025-07-26 21:09:12] 2025-07-27 01:08:39,240 | INFO     | intersect: 162291715046.2129
[2025-07-26 21:09:12] 2025-07-27 01:08:39,240 | INFO     | chi2: 0.232931141050647
[2025-07-26 21:09:12] 2025-07-27 01:08:39,240 | INFO     | -- intersect: 162291715046.2129
[2025-07-26 21:09:12] 2025-07-27 01:08:39,241 | INFO     | current memory leak: -92.55 B/s (using 74 data points, chi2=0.23)
[2025-07-26 21:09:12] 2025-07-27 01:08:39,241 | INFO     | could have reported an average CPU frequency of 2590 MHz (6 samples)
[2025-07-26 21:09:12] 2025-07-27 01:08:39,241 | INFO     | ..............................
[2025-07-26 21:09:12] 2025-07-27 01:08:39,241 | INFO     | . Timing measurements:
[2025-07-26 21:09:12] 2025-07-27 01:08:39,241 | INFO     | . get job = 0 s
[2025-07-26 21:09:12] 2025-07-27 01:08:39,241 | INFO     | . initial setup = 2 s
[2025-07-26 21:09:12] 2025-07-27 01:08:39,241 | INFO     | . payload setup = 8 s
[2025-07-26 21:09:12] 2025-07-27 01:08:39,241 | INFO     | . stage-in = 0 s
[2025-07-26 21:09:12] 2025-07-27 01:08:39,241 | INFO     | . payload execution = 4922 s
[2025-07-26 21:09:12] 2025-07-27 01:08:39,241 | INFO     | . stage-out = 0 s
[2025-07-26 21:09:12] 2025-07-27 01:08:39,242 | INFO     | . log creation = 0 s
[2025-07-26 21:09:12] 2025-07-27 01:08:39,242 | INFO     | ..............................
[2025-07-26 21:09:12] 2025-07-27 01:08:39,334 | INFO     | 
[2025-07-26 21:09:12] 2025-07-27 01:08:39,334 | INFO     | job summary report
[2025-07-26 21:09:12] 2025-07-27 01:08:39,334 | INFO     | --------------------------------------------------
[2025-07-26 21:09:12] 2025-07-27 01:08:39,334 | INFO     | PanDA job id: 6745350573
[2025-07-26 21:09:12] 2025-07-27 01:08:39,334 | INFO     | task id: 45743349
[2025-07-26 21:09:12] 2025-07-27 01:08:39,335 | INFO     | errors: (none)
[2025-07-26 21:09:12] 2025-07-27 01:08:39,335 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 21:09:12] 2025-07-27 01:08:39,335 | INFO     | pilot state: finished 
[2025-07-26 21:09:12] 2025-07-27 01:08:39,335 | INFO     | transexitcode: 0
[2025-07-26 21:09:12] 2025-07-27 01:08:39,335 | INFO     | exeerrorcode: 0
[2025-07-26 21:09:12] 2025-07-27 01:08:39,335 | INFO     | exeerrordiag: 
[2025-07-26 21:09:12] 2025-07-27 01:08:39,335 | INFO     | exitcode: 0
[2025-07-26 21:09:12] 2025-07-27 01:08:39,335 | INFO     | exitmsg: OK
[2025-07-26 21:09:12] 2025-07-27 01:08:39,335 | INFO     | cpuconsumptiontime: 49734 s
[2025-07-26 21:09:12] 2025-07-27 01:08:39,335 | INFO     | nevents: 400
[2025-07-26 21:09:12] 2025-07-27 01:08:39,335 | INFO     | neventsw: 0
[2025-07-26 21:09:12] 2025-07-27 01:08:39,335 | INFO     | pid: 3137015
[2025-07-26 21:09:12] 2025-07-27 01:08:39,336 | INFO     | pgrp: 3137015
[2025-07-26 21:09:12] 2025-07-27 01:08:39,336 | INFO     | corecount: 12
[2025-07-26 21:09:12] 2025-07-27 01:08:39,336 | INFO     | event service: False
[2025-07-26 21:09:12] 2025-07-27 01:08:39,336 | INFO     | sizes: {0: 2397304, 1: 2397503, 6: 2397765, 12: 2397793, 4935: 2423980, 4937: 2432978, 4938: 2433162, 4945: 2433356}
[2025-07-26 21:09:12] 2025-07-27 01:08:39,336 | INFO     | --------------------------------------------------
[2025-07-26 21:09:12] 2025-07-27 01:08:39,336 | INFO     | 
[2025-07-26 21:09:12] 2025-07-27 01:08:39,336 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 21:09:12] 2025-07-27 01:08:39,360 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,361 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,361 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,361 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,361 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,361 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,361 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,361 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,361 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,361 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,362 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,362 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,362 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,362 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,362 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,362 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,362 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,362 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 21:09:12] 2025-07-27 01:08:39,363 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,363 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 21:09:12] 2025-07-27 01:08:39,363 | INFO     | job 6745350573 has completed (purged errors)
[2025-07-26 21:09:12] 2025-07-27 01:08:39,363 | INFO     | overall cleanup function is called
[2025-07-26 21:09:12] 2025-07-27 01:08:40,372 | INFO     | --- collectZombieJob: --- 10, [3137015]
[2025-07-26 21:09:12] 2025-07-27 01:08:40,372 | INFO     | zombie collector waiting for pid 3137015
[2025-07-26 21:09:12] 2025-07-27 01:08:40,372 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 21:09:12] 2025-07-27 01:08:40,373 | INFO     | collected zombie processes
[2025-07-26 21:09:12] 2025-07-27 01:08:40,374 | INFO     | will attempt to kill all subprocesses of pid=3137015
[2025-07-26 21:09:12] 2025-07-27 01:08:40,733 | INFO     | process IDs to be killed: [3137015] (in reverse order)
[2025-07-26 21:09:12] 2025-07-27 01:08:40,853 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 21:09:12] 2025-07-27 01:08:40,854 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 21:09:12] 2025-07-27 01:08:40,865 | INFO     | did not find any defunct processes belonging to 3137015
[2025-07-26 21:09:12] 2025-07-27 01:08:40,876 | INFO     | did not find any defunct processes belonging to 3137015
[2025-07-26 21:09:12] 2025-07-27 01:08:40,877 | INFO     | ready for new job
[2025-07-26 21:09:12] 2025-07-27 01:08:40,877 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 21:09:12] 2025-07-27 01:08:40,879 | INFO     | ***************************************
[2025-07-26 21:09:12] 2025-07-27 01:08:40,879 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 21:09:12] 2025-07-27 01:08:40,880 | INFO     | ***************************************
[2025-07-26 21:09:12] 2025-07-27 01:08:40,880 | INFO     | 
[2025-07-26 21:09:12] 2025-07-27 01:08:40,896 | INFO     | architecture information:
[2025-07-26 21:09:12] 2025-07-27 01:08:40,897 | INFO     | executing command: cat /etc/os-release
[2025-07-26 21:09:12] 2025-07-27 01:08:40,913 | INFO     | cat /etc/os-release:
[2025-07-26 21:09:12] NAME="CentOS Linux"
[2025-07-26 21:09:12] VERSION="7 (Core)"
[2025-07-26 21:09:12] ID="centos"
[2025-07-26 21:09:12] ID_LIKE="rhel fedora"
[2025-07-26 21:09:12] VERSION_ID="7"
[2025-07-26 21:09:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 21:09:12] ANSI_COLOR="0;31"
[2025-07-26 21:09:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 21:09:12] HOME_URL="https://www.centos.org/"
[2025-07-26 21:09:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 21:09:12] 
[2025-07-26 21:09:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 21:09:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 21:09:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 21:09:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 21:09:12] 
[2025-07-26 21:09:12] 2025-07-27 01:08:40,913 | INFO     | ***************************************
[2025-07-26 21:09:12] 2025-07-27 01:08:41,415 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 21:09:12] 2025-07-27 01:08:41,433 | INFO     | sufficient remaining disk space (76527173632 B)
[2025-07-26 21:09:12] 2025-07-27 01:08:41,433 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 21:09:12] 2025-07-27 01:08:41,434 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 21:09:12] 2025-07-27 01:08:41,434 | INFO     | update_server=False
[2025-07-26 21:09:12] 2025-07-27 01:08:41,434 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 21:09:12] 2025-07-27 01:08:41,434 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 21:09:12] 2025-07-27 01:08:41,881 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 21:09:12] 2025-07-27 01:08:41,881 | INFO     | aborting loop
[2025-07-26 21:09:12] 2025-07-27 01:08:42,084 | INFO     | all job control threads have been joined
[2025-07-26 21:09:12] 2025-07-27 01:08:42,182 | INFO     | all payload control threads have been joined
[2025-07-26 21:09:12] 2025-07-27 01:08:42,363 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 21:09:12] 2025-07-27 01:08:42,382 | INFO     | all data control threads have been joined
[2025-07-26 21:09:12] 2025-07-27 01:08:42,439 | INFO     | [job] retrieve thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:42,620 | INFO     | [payload] validate_post thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:42,886 | INFO     | [job] job monitor thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:42,922 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:42,957 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:43,089 | INFO     | [job] control thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:43,188 | INFO     | [payload] control thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:43,233 | INFO     | [job] validate thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:43,387 | INFO     | [data] control thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:43,440 | INFO     | [data] copytool_out thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:43,486 | INFO     | [data] copytool_in thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:43,514 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:43,631 | INFO     | [payload] failed_post thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:43,641 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:44,344 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 21:09:12] 2025-07-27 01:08:45,350 | INFO     | [job] queue monitor thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:46,370 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 21:09:12] 2025-07-27 01:08:47,265 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140237657405248)>', '<ExcThread(monitor, started 140237141415680)>']
[2025-07-26 21:09:12] 2025-07-27 01:08:52,290 | INFO     | all workflow threads have been joined
[2025-07-26 21:09:12] 2025-07-27 01:08:52,291 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 21:09:12] 2025-07-27 01:08:52,291 | INFO     | traces error code: 0
[2025-07-26 21:09:12] 2025-07-27 01:08:52,291 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 21:09:12] 2025-07-27 01:09:11,716 | INFO     | PID=3129255 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 21:09:12] 2025-07-27 01:09:11,717 | INFO     | .. there are 14 such processes running
[2025-07-26 21:09:12] 2025-07-27 01:09:11,718 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 21:09:12] 2025-07-27 01:09:11,718 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 21:09:12] 2025-07-27 01:09:11,718 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 21:09:12] 2025-07-27 01:09:11,718 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 21:09:12] 2025-07-27 01:09:11,718 | INFO     | [monitor] control thread has ended
[2025-07-26 21:09:12] 2025-07-27 01:09:11,890 [wrapper] ==== pilot stdout END ====
[2025-07-26 21:09:12] 2025-07-27 01:09:11,894 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 21:09:12] 2025-07-27 01:09:11,897 [wrapper] pilotpid: 3129255
[2025-07-26 21:09:12] 2025-07-27 01:09:11,902 [wrapper] Pilot exit status: 0
[2025-07-26 21:09:12] 2025-07-27 01:09:11,919 [wrapper] pandaids: 6745350573
[2025-07-26 21:09:12] 2025-07-27 01:09:11,985 [wrapper] cleanup supervisor_pilot 3434186 3129256
[2025-07-26 21:09:12] 2025-07-27 01:09:11,988 [wrapper] Test setup, not cleaning
[2025-07-26 21:09:12] 2025-07-27 01:09:11,991 [wrapper] apfmon messages muted
[2025-07-26 21:09:12] 2025-07-27 01:09:11,994 [wrapper] ==== wrapper stdout END ====
[2025-07-26 21:09:12] 2025-07-27 01:09:11,996 [wrapper] ==== wrapper stderr END ====
[2025-07-26 21:09:12]  *** Error codes and diagnostics ***
[2025-07-26 21:09:12]     "exeErrorCode": 0,
[2025-07-26 21:09:12]     "exeErrorDiag": "",
[2025-07-26 21:09:12]     "pilotErrorCode": 0,
[2025-07-26 21:09:12]     "pilotErrorDiag": "",
[2025-07-26 21:09:12]  *** Listing of results directory ***
[2025-07-26 21:09:12] total 360336
[2025-07-26 21:09:12] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 13:17 pilot3.tar.gz
[2025-07-26 21:09:12] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 13:21 queuedata.json
[2025-07-26 21:09:12] -rwx------. 1 boincer umatlas     36292 Jul 26 13:22 runpilot2-wrapper.sh
[2025-07-26 21:09:12] -rw-r--r--. 1 boincer umatlas       100 Jul 26 19:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 21:09:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 19:45 run_atlas
[2025-07-26 21:09:12] -rw-r--r--. 1 boincer umatlas       105 Jul 26 19:45 job.xml
[2025-07-26 21:09:12] -rw-r--r--. 2 boincer umatlas 146127857 Jul 26 19:45 EVNT.45743347._002342.pool.root.1
[2025-07-26 21:09:12] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 19:45 start_atlas.sh
[2025-07-26 21:09:12] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 19:45 shared
[2025-07-26 21:09:12] -rw-r--r--. 2 boincer umatlas    542900 Jul 26 19:45 input.tar.gz
[2025-07-26 21:09:12] -rw-r--r--. 1 boincer umatlas         0 Jul 26 19:45 boinc_lockfile
[2025-07-26 21:09:12] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 19:45 pandaJob.out
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas    980117 Jul 26 19:45 agis_schedconf.cvmfs.json
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas   1593052 Jul 26 19:45 agis_ddmendpoints.agis.ALL.json
[2025-07-26 21:09:12] drwx------. 4 boincer umatlas      4096 Jul 26 19:45 pilot3
[2025-07-26 21:09:12] -rw-r--r--. 1 boincer umatlas      6842 Jul 26 21:02 init_data.xml
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas 217279779 Jul 26 21:07 HITS.45743349._041491.pool.root.1
[2025-07-26 21:09:12] -rw-r--r--. 1 boincer umatlas       529 Jul 26 21:07 boinc_task_state.xml
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas      1036 Jul 26 21:08 memory_monitor_summary.json
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas    371216 Jul 26 21:08 log.45743349._041491.job.log.tgz.1
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas      7823 Jul 26 21:08 heartbeat.json
[2025-07-26 21:09:12] -rw-r--r--. 1 boincer umatlas        27 Jul 26 21:09 wrapper_checkpoint.txt
[2025-07-26 21:09:12] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 21:09 boinc_mmap_file
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas        95 Jul 26 21:09 pilot_heartbeat.json
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas       823 Jul 26 21:09 pilotlog.txt
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas    482583 Jul 26 21:09 log.45743349._041491.job.log.1
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas       357 Jul 26 21:09 output.list
[2025-07-26 21:09:12] -rw-r--r--. 1 boincer umatlas       620 Jul 26 21:09 runtime_log
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas    870400 Jul 26 21:09 result.tar.gz
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas       654 Jul 26 21:09 ziSNDmomxz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmx70KDmUR3V0n.diag
[2025-07-26 21:09:12] -rw-r--r--. 1 boincer umatlas      8667 Jul 26 21:09 runtime_log.err
[2025-07-26 21:09:12] -rw-r--r--. 1 boincer umatlas     22209 Jul 26 21:09 stderr.txt
[2025-07-26 21:09:12] HITS file was successfully produced:
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas 217279779 Jul 26 21:07 shared/HITS.pool.root.1
[2025-07-26 21:09:12]  *** Contents of shared directory: ***
[2025-07-26 21:09:12] total 356296
[2025-07-26 21:09:12] -rw-r--r--. 2 boincer umatlas 146127857 Jul 26 19:45 ATLAS.root_0
[2025-07-26 21:09:12] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 19:45 start_atlas.sh
[2025-07-26 21:09:12] -rw-r--r--. 2 boincer umatlas    542900 Jul 26 19:45 input.tar.gz
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas 217279779 Jul 26 21:07 HITS.pool.root.1
[2025-07-26 21:09:12] -rw-------. 1 boincer umatlas    870400 Jul 26 21:09 result.tar.gz
21:09:14 (3125642): run_atlas exited; CPU time 49839.096571
21:09:14 (3125642): called boinc_finish(0)

</stderr_txt>
]]>

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