Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:21:38 (1759684): wrapper (7.7.26015): starting
18:21:38 (1759684): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 18:21:38] Arguments: --nthreads 8
[2025-07-26 18:21:38] Threads: 8
[2025-07-26 18:21:38] Checking for CVMFS
[2025-07-26 18:21:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 18:21:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 18:21:39] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 18:21:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 18:21:39] 2.13.0.0 100689 26387 269480 148792 0 191 18145492 32935936 17295 16776704 0 193632176 99.567 261481536 20241 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 18:21:39] CVMFS is ok
[2025-07-26 18:21:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 18:21:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 18:21:39] Further information can be found at the LHC@home message board.
[2025-07-26 18:21:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 18:21:39] Checking for apptainer binary...
[2025-07-26 18:21:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 18:21:39] Running /usr/bin/apptainer --version
[2025-07-26 18:21:39] apptainer version 1.4.1-1.el9
[2025-07-26 18:21:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 18:21:39] c7-2-38.aglt2.org
[2025-07-26 18:21:39] apptainer works
[2025-07-26 18:21:39] Set ATHENA_PROC_NUMBER=8
[2025-07-26 18:21:39] Set ATHENA_CORE_NUMBER=8
[2025-07-26 18:21:39] Starting ATLAS job with PandaID=6745263967
[2025-07-26 18:21:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 19:48:49]  *** The last 200 lines of the pilot log: ***
[2025-07-26 19:48:49]  protocol_id=None
[2025-07-26 19:48:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 19:48:49]  replicas=None
[2025-07-26 19:48:49]  scope=mc23_13p6TeV
[2025-07-26 19:48:49]  status=None
[2025-07-26 19:48:49]  status_code=0
[2025-07-26 19:48:49]  storage_token=
[2025-07-26 19:48:49]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6745263967/log.45743349._041368.job.log.tgz.1
[2025-07-26 19:48:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/3c/log.45743349._041368.job.log.tgz.1
[2025-07-26 19:48:49]  workdir=None
[2025-07-26 19:48:49] ]
[2025-07-26 19:48:49] 2025-07-26 23:48:26,072 | INFO     | transferring file log.45743349._041368.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6745263967/log.45743349._041368.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 19:48:49] 2025-07-26 23:48:26,072 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6745263967/log.45743349._041368.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._041368.job
[2025-07-26 19:48:49] 2025-07-26 23:48:26,078 | INFO     | monitor loop #366: job 0:6745263967 is in state 'stageout'
[2025-07-26 19:48:49] 2025-07-26 23:48:26,079 | WARNING  | aborting job monitor tasks since payload process 1782419 is not running
[2025-07-26 19:48:49] 2025-07-26 23:48:26,103 | INFO     | adding to output.list: log.45743349._041368.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a7/3c/log.45743349._041368.job.log.tg
[2025-07-26 19:48:49] 2025-07-26 23:48:26,104 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 19:48:49] 2025-07-26 23:48:26,104 | INFO     | summary of transferred files:
[2025-07-26 19:48:49] 2025-07-26 23:48:26,104 | INFO     |  -- lfn=log.45743349._041368.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 19:48:49] 2025-07-26 23:48:26,104 | INFO     | stage-out finished correctly
[2025-07-26 19:48:49] 2025-07-26 23:48:27,966 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 19:48:49] 2025-07-26 23:48:28,101 | INFO     | job 6745263967 has state=finished
[2025-07-26 19:48:49] 2025-07-26 23:48:28,101 | INFO     | preparing for final server update for job 6745263967 in state='finished'
[2025-07-26 19:48:49] 2025-07-26 23:48:28,102 | INFO     | this job has now completed (state=finished)
[2025-07-26 19:48:49] 2025-07-26 23:48:28,102 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 19:48:49] 2025-07-26 23:48:28,102 | INFO     | log transfer has been attempted: DONE
[2025-07-26 19:48:49] 2025-07-26 23:48:28,102 | INFO     | job 6745263967 has finished - writing final server update
[2025-07-26 19:48:49] 2025-07-26 23:48:28,103 | INFO     | total number of processed events: 400 (read)
[2025-07-26 19:48:49] 2025-07-26 23:48:28,112 | INFO     | executing command: lscpu
[2025-07-26 19:48:49] 2025-07-26 23:48:28,200 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 19:48:49] 2025-07-26 23:48:28,614 | INFO     | monitor loop #367: job 0:6745263967 is in state 'finished'
[2025-07-26 19:48:49] 2025-07-26 23:48:28,614 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:48:49] 2025-07-26 23:48:31,124 | INFO     | monitor loop #368: job 0:6745263967 is in state 'finished'
[2025-07-26 19:48:49] 2025-07-26 23:48:31,124 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:48:49] 2025-07-26 23:48:33,629 | INFO     | monitor loop #369: job 0:6745263967 is in state 'finished'
[2025-07-26 19:48:49] 2025-07-26 23:48:33,629 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:48:49] 2025-07-26 23:48:34,877 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 19:48:49] 2025-07-26 23:48:34,891 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3128.8413124999993
[2025-07-26 19:48:49] 2025-07-26 23:48:34,912 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745263967/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 19:48:49] 2025-07-26 23:48:34,912 | INFO     | extracted standard info from prmon json
[2025-07-26 19:48:49] 2025-07-26 23:48:34,913 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 19:48:49] 2025-07-26 23:48:34,913 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 19:48:49] 2025-07-26 23:48:34,913 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 19:48:49] 2025-07-26 23:48:34,913 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 19:48:49] 2025-07-26 23:48:34,915 | INFO     | fitting pss+swap vs Time
[2025-07-26 19:48:49] 2025-07-26 23:48:34,915 | INFO     | sum of square deviations: 147124591.38461536
[2025-07-26 19:48:49] 2025-07-26 23:48:34,926 | INFO     | sum of deviations: -8916801988.538458
[2025-07-26 19:48:49] 2025-07-26 23:48:34,926 | INFO     | mean x: 1753571197.5384614
[2025-07-26 19:48:49] 2025-07-26 23:48:34,927 | INFO     | mean y: 2326463.012820513
[2025-07-26 19:48:49] 2025-07-26 23:48:34,927 | INFO     | -- intersect: 106281276800.94919
[2025-07-26 19:48:49] 2025-07-26 23:48:34,927 | INFO     | intersect: 106281276800.94919
[2025-07-26 19:48:49] 2025-07-26 23:48:34,927 | INFO     | chi2: 0.05115466260267189
[2025-07-26 19:48:49] 2025-07-26 23:48:34,927 | INFO     | -- intersect: 106281276800.94919
[2025-07-26 19:48:49] 2025-07-26 23:48:34,927 | INFO     | current memory leak: -60.61 B/s (using 78 data points, chi2=0.05)
[2025-07-26 19:48:49] 2025-07-26 23:48:34,927 | INFO     | could have reported an average CPU frequency of 3162 MHz (6 samples)
[2025-07-26 19:48:49] 2025-07-26 23:48:34,928 | INFO     | ..............................
[2025-07-26 19:48:49] 2025-07-26 23:48:34,928 | INFO     | . Timing measurements:
[2025-07-26 19:48:49] 2025-07-26 23:48:34,928 | INFO     | . get job = 0 s
[2025-07-26 19:48:49] 2025-07-26 23:48:34,928 | INFO     | . initial setup = 2 s
[2025-07-26 19:48:49] 2025-07-26 23:48:34,928 | INFO     | . payload setup = 8 s
[2025-07-26 19:48:49] 2025-07-26 23:48:34,928 | INFO     | . stage-in = 0 s
[2025-07-26 19:48:49] 2025-07-26 23:48:34,928 | INFO     | . payload execution = 5163 s
[2025-07-26 19:48:49] 2025-07-26 23:48:34,928 | INFO     | . stage-out = 0 s
[2025-07-26 19:48:49] 2025-07-26 23:48:34,928 | INFO     | . log creation = 0 s
[2025-07-26 19:48:49] 2025-07-26 23:48:34,928 | INFO     | ..............................
[2025-07-26 19:48:49] 2025-07-26 23:48:35,003 | INFO     | 
[2025-07-26 19:48:49] 2025-07-26 23:48:35,003 | INFO     | job summary report
[2025-07-26 19:48:49] 2025-07-26 23:48:35,003 | INFO     | --------------------------------------------------
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | PanDA job id: 6745263967
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | task id: 45743349
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | errors: (none)
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | pilot state: finished 
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | transexitcode: 0
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | exeerrorcode: 0
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | exeerrordiag: 
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | exitcode: 0
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | exitmsg: OK
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | cpuconsumptiontime: 36882 s
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | nevents: 400
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | neventsw: 0
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | pid: 1782419
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | pgrp: 1782419
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | corecount: 8
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | event service: False
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | sizes: {0: 2397248, 1: 2397503, 6: 2397765, 12: 2397793, 5176: 2424221, 5177: 2433219, 5179: 2433403, 5186: 2433597}
[2025-07-26 19:48:49] 2025-07-26 23:48:35,004 | INFO     | --------------------------------------------------
[2025-07-26 19:48:49] 2025-07-26 23:48:35,005 | INFO     | 
[2025-07-26 19:48:49] 2025-07-26 23:48:35,005 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-26 19:48:49] 2025-07-26 23:48:35,030 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,030 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 19:48:49] 2025-07-26 23:48:35,031 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,032 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 19:48:49] 2025-07-26 23:48:35,032 | INFO     | job 6745263967 has completed (purged errors)
[2025-07-26 19:48:49] 2025-07-26 23:48:35,032 | INFO     | overall cleanup function is called
[2025-07-26 19:48:49] 2025-07-26 23:48:36,040 | INFO     | --- collectZombieJob: --- 10, [1782419]
[2025-07-26 19:48:49] 2025-07-26 23:48:36,040 | INFO     | zombie collector waiting for pid 1782419
[2025-07-26 19:48:49] 2025-07-26 23:48:36,040 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 19:48:49] 2025-07-26 23:48:36,041 | INFO     | collected zombie processes
[2025-07-26 19:48:49] 2025-07-26 23:48:36,041 | INFO     | will attempt to kill all subprocesses of pid=1782419
[2025-07-26 19:48:49] 2025-07-26 23:48:37,135 | INFO     | PID=1768931 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-26 19:48:49] 2025-07-26 23:48:37,145 | INFO     | .. there are 20 such processes running
[2025-07-26 19:48:49] 2025-07-26 23:48:37,150 | INFO     | process IDs to be killed: [1782419] (in reverse order)
[2025-07-26 19:48:49] 2025-07-26 23:48:37,325 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 19:48:49] 2025-07-26 23:48:37,325 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 19:48:49] 2025-07-26 23:48:37,403 | INFO     | did not find any defunct processes belonging to 1782419
[2025-07-26 19:48:49] 2025-07-26 23:48:37,428 | INFO     | did not find any defunct processes belonging to 1782419
[2025-07-26 19:48:49] 2025-07-26 23:48:37,428 | INFO     | ready for new job
[2025-07-26 19:48:49] 2025-07-26 23:48:37,428 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 19:48:49] 2025-07-26 23:48:37,430 | INFO     | ***************************************
[2025-07-26 19:48:49] 2025-07-26 23:48:37,430 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 19:48:49] 2025-07-26 23:48:37,430 | INFO     | ***************************************
[2025-07-26 19:48:49] 2025-07-26 23:48:37,430 | INFO     | 
[2025-07-26 19:48:49] 2025-07-26 23:48:37,436 | INFO     | architecture information:
[2025-07-26 19:48:49] 2025-07-26 23:48:37,436 | INFO     | executing command: cat /etc/os-release
[2025-07-26 19:48:49] 2025-07-26 23:48:37,463 | INFO     | cat /etc/os-release:
[2025-07-26 19:48:49] NAME="CentOS Linux"
[2025-07-26 19:48:49] VERSION="7 (Core)"
[2025-07-26 19:48:49] ID="centos"
[2025-07-26 19:48:49] ID_LIKE="rhel fedora"
[2025-07-26 19:48:49] VERSION_ID="7"
[2025-07-26 19:48:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 19:48:49] ANSI_COLOR="0;31"
[2025-07-26 19:48:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 19:48:49] HOME_URL="https://www.centos.org/"
[2025-07-26 19:48:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 19:48:49] 
[2025-07-26 19:48:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 19:48:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 19:48:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 19:48:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 19:48:49] 
[2025-07-26 19:48:49] 2025-07-26 23:48:37,463 | INFO     | ***************************************
[2025-07-26 19:48:49] 2025-07-26 23:48:37,967 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-26 19:48:49] 2025-07-26 23:48:38,002 | INFO     | sufficient remaining disk space (75694604288 B)
[2025-07-26 19:48:49] 2025-07-26 23:48:38,002 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 19:48:49] 2025-07-26 23:48:38,002 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 19:48:49] 2025-07-26 23:48:38,003 | INFO     | update_server=False
[2025-07-26 19:48:49] 2025-07-26 23:48:38,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 19:48:49] 2025-07-26 23:48:38,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 19:48:49] 2025-07-26 23:48:38,003 | INFO     | aborting loop
[2025-07-26 19:48:49] 2025-07-26 23:48:38,009 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-26 19:48:49] 2025-07-26 23:48:38,009 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 19:48:49] 2025-07-26 23:48:38,009 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 19:48:49] 2025-07-26 23:48:38,009 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 19:48:49] 2025-07-26 23:48:38,302 | INFO     | all data control threads have been joined
[2025-07-26 19:48:49] 2025-07-26 23:48:38,619 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 19:48:49] 2025-07-26 23:48:39,008 | INFO     | [job] retrieve thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:39,012 | INFO     | [job] job monitor thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:39,015 | INFO     | [payload] validate_post thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:39,213 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 19:48:49] 2025-07-26 23:48:39,308 | INFO     | [data] control thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:39,403 | INFO     | all payload control threads have been joined
[2025-07-26 19:48:49] 2025-07-26 23:48:39,417 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:39,454 | INFO     | [payload] failed_post thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:39,504 | INFO     | all job control threads have been joined
[2025-07-26 19:48:49] 2025-07-26 23:48:39,641 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:40,021 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 19:48:49] 2025-07-26 23:48:40,145 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:40,238 | INFO     | [job] validate thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:40,288 | INFO     | [data] copytool_in thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:40,344 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:40,409 | INFO     | [payload] control thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:40,512 | INFO     | [job] control thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:41,027 | INFO     | [job] queue monitor thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:41,221 | INFO     | [data] copytool_out thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:42,630 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 19:48:49] 2025-07-26 23:48:43,733 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140428632270656)>', '<ExcThread(monitor, started 140427663480576)>']
[2025-07-26 19:48:49] 2025-07-26 23:48:44,045 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 19:48:49] 2025-07-26 23:48:44,045 | INFO     | [monitor] control thread has ended
[2025-07-26 19:48:49] 2025-07-26 23:48:48,758 | INFO     | all workflow threads have been joined
[2025-07-26 19:48:49] 2025-07-26 23:48:48,758 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 19:48:49] 2025-07-26 23:48:48,759 | INFO     | traces error code: 0
[2025-07-26 19:48:49] 2025-07-26 23:48:48,759 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 19:48:49] 2025-07-26 23:48:48,936 [wrapper] ==== pilot stdout END ====
[2025-07-26 19:48:49] 2025-07-26 23:48:48,947 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 19:48:49] 2025-07-26 23:48:48,953 [wrapper] pilotpid: 1768931
[2025-07-26 19:48:49] 2025-07-26 23:48:48,958 [wrapper] Pilot exit status: 0
[2025-07-26 19:48:49] 2025-07-26 23:48:48,988 [wrapper] pandaids: 6745263967
[2025-07-26 19:48:49] 2025-07-26 23:48:49,115 [wrapper] cleanup supervisor_pilot 2559752 1768932
[2025-07-26 19:48:49] 2025-07-26 23:48:49,123 [wrapper] Test setup, not cleaning
[2025-07-26 19:48:49] 2025-07-26 23:48:49,136 [wrapper] apfmon messages muted
[2025-07-26 19:48:49] 2025-07-26 23:48:49,144 [wrapper] ==== wrapper stdout END ====
[2025-07-26 19:48:49] 2025-07-26 23:48:49,153 [wrapper] ==== wrapper stderr END ====
[2025-07-26 19:48:49]  *** Error codes and diagnostics ***
[2025-07-26 19:48:49]     "exeErrorCode": 0,
[2025-07-26 19:48:49]     "exeErrorDiag": "",
[2025-07-26 19:48:49]     "pilotErrorCode": 0,
[2025-07-26 19:48:49]     "pilotErrorDiag": "",
[2025-07-26 19:48:49]  *** Listing of results directory ***
[2025-07-26 19:48:49] total 353180
[2025-07-26 19:48:49] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 12:59 queuedata.json
[2025-07-26 19:48:49] -rwx------. 1 boincer umatlas     36292 Jul 26 13:01 runpilot2-wrapper.sh
[2025-07-26 19:48:49] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 13:01 pilot3.tar.gz
[2025-07-26 19:48:49] -rw-r--r--. 1 boincer umatlas       100 Jul 26 18:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 19:48:49] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 18:21 run_atlas
[2025-07-26 19:48:49] -rw-r--r--. 1 boincer umatlas       105 Jul 26 18:21 job.xml
[2025-07-26 19:48:49] -rw-r--r--. 2 boincer umatlas 144043901 Jul 26 18:21 EVNT.45743347._002456.pool.root.1
[2025-07-26 19:48:49] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 18:21 start_atlas.sh
[2025-07-26 19:48:49] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 18:21 shared
[2025-07-26 19:48:49] -rw-r--r--. 2 boincer umatlas    542896 Jul 26 18:21 input.tar.gz
[2025-07-26 19:48:49] -rw-r--r--. 1 boincer umatlas         0 Jul 26 18:21 boinc_lockfile
[2025-07-26 19:48:49] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 18:21 pandaJob.out
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas    980125 Jul 26 18:21 agis_schedconf.cvmfs.json
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas   1593052 Jul 26 18:21 agis_ddmendpoints.agis.ALL.json
[2025-07-26 19:48:49] drwx------. 4 boincer umatlas      4096 Jul 26 18:21 pilot3
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas 212133406 Jul 26 19:47 HITS.45743349._041368.pool.root.1
[2025-07-26 19:48:49] -rw-r--r--. 1 boincer umatlas       529 Jul 26 19:47 boinc_task_state.xml
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas        95 Jul 26 19:48 pilot_heartbeat.json
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas      1033 Jul 26 19:48 memory_monitor_summary.json
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas    298806 Jul 26 19:48 log.45743349._041368.job.log.tgz.1
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas      7772 Jul 26 19:48 heartbeat.json
[2025-07-26 19:48:49] -rw-r--r--. 1 boincer umatlas      6932 Jul 26 19:48 init_data.xml
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas      4480 Jul 26 19:48 pilotlog.txt
[2025-07-26 19:48:49] -rw-r--r--. 1 boincer umatlas        27 Jul 26 19:48 wrapper_checkpoint.txt
[2025-07-26 19:48:49] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 19:48 boinc_mmap_file
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas    502238 Jul 26 19:48 log.45743349._041368.job.log.1
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas       357 Jul 26 19:48 output.list
[2025-07-26 19:48:49] -rw-r--r--. 1 boincer umatlas       620 Jul 26 19:48 runtime_log
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas    819200 Jul 26 19:48 result.tar.gz
[2025-07-26 19:48:49] -rw-r--r--. 1 boincer umatlas      8655 Jul 26 19:48 runtime_log.err
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas       652 Jul 26 19:48 HSIMDm2Rxz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAgSLDm0c4XHn.diag
[2025-07-26 19:48:49] -rw-r--r--. 1 boincer umatlas     21894 Jul 26 19:48 stderr.txt
[2025-07-26 19:48:49] HITS file was successfully produced:
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas 212133406 Jul 26 19:47 shared/HITS.pool.root.1
[2025-07-26 19:48:49]  *** Contents of shared directory: ***
[2025-07-26 19:48:49] total 349188
[2025-07-26 19:48:49] -rw-r--r--. 2 boincer umatlas 144043901 Jul 26 18:21 ATLAS.root_0
[2025-07-26 19:48:49] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 18:21 start_atlas.sh
[2025-07-26 19:48:49] -rw-r--r--. 2 boincer umatlas    542896 Jul 26 18:21 input.tar.gz
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas 212133406 Jul 26 19:47 HITS.pool.root.1
[2025-07-26 19:48:49] -rw-------. 1 boincer umatlas    819200 Jul 26 19:48 result.tar.gz
19:48:51 (1759684): run_atlas exited; CPU time 37055.999728
19:48:51 (1759684): called boinc_finish(0)

</stderr_txt>
]]>

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