Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:19:31 (3596817): wrapper (7.7.26015): starting
18:19:31 (3596817): wrapper: running run_atlas (--nthreads 10)
[2025-07-26 18:19:31] Arguments: --nthreads 10
[2025-07-26 18:19:31] Threads: 10
[2025-07-26 18:19:31] Checking for CVMFS
[2025-07-26 18:19:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 18:19:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 18:19:31] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 18:19:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 18:19:31] 2.12.6.0 705810 17533 277284 148792 1 65 23740874 32935936 9292 16776704 1 58298086 99.577 68497521 27620 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 18:19:31] CVMFS is ok
[2025-07-26 18:19:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 18:19:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 18:19:31] Further information can be found at the LHC@home message board.
[2025-07-26 18:19:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 18:19:31] Checking for apptainer binary...
[2025-07-26 18:19:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 18:19:31] Running /usr/bin/apptainer --version
[2025-07-26 18:19:31] apptainer version 1.4.1-1.el9
[2025-07-26 18:19:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 18:19:31] c-8-16.aglt2.org
[2025-07-26 18:19:31] apptainer works
[2025-07-26 18:19:31] Set ATHENA_PROC_NUMBER=10
[2025-07-26 18:19:31] Set ATHENA_CORE_NUMBER=10
[2025-07-26 18:19:31] Starting ATLAS job with PandaID=6745263987
[2025-07-26 18:19:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 19:56:12]  *** The last 200 lines of the pilot log: ***
[2025-07-26 19:56:12]  mtime=0
[2025-07-26 19:56:12]  protocol_id=None
[2025-07-26 19:56:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 19:56:12]  replicas=None
[2025-07-26 19:56:12]  scope=mc23_13p6TeV
[2025-07-26 19:56:12]  status=None
[2025-07-26 19:56:12]  status_code=0
[2025-07-26 19:56:12]  storage_token=
[2025-07-26 19:56:12]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745263987/log.45743349._041388.job.log.tgz.1
[2025-07-26 19:56:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/3d/log.45743349._041388.job.log.tgz.1
[2025-07-26 19:56:12]  workdir=None
[2025-07-26 19:56:12] ]
[2025-07-26 19:56:12] 2025-07-26 23:55:32,527 | INFO     | transferring file log.45743349._041388.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745263987/log.45743349._041388.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 19:56:12] 2025-07-26 23:55:32,527 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745263987/log.45743349._041388.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._041388.job
[2025-07-26 19:56:12] 2025-07-26 23:55:32,548 | INFO     | adding to output.list: log.45743349._041388.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d9/3d/log.45743349._041388.job.log.tg
[2025-07-26 19:56:12] 2025-07-26 23:55:32,550 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 19:56:12] 2025-07-26 23:55:32,550 | INFO     | summary of transferred files:
[2025-07-26 19:56:12] 2025-07-26 23:55:32,551 | INFO     |  -- lfn=log.45743349._041388.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 19:56:12] 2025-07-26 23:55:32,551 | INFO     | stage-out finished correctly
[2025-07-26 19:56:12] 2025-07-26 23:55:33,343 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 19:56:12] 2025-07-26 23:55:34,105 | WARNING  | process 3607931 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 19:56:12] 2025-07-26 23:55:34,105 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745263987/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 19:56:12] 2025-07-26 23:55:34,419 | INFO     | number of running child processes to parent process 3607931: 1
[2025-07-26 19:56:12] 2025-07-26 23:55:34,419 | INFO     | maximum number of monitored processes: 6
[2025-07-26 19:56:12] 2025-07-26 23:55:35,345 | INFO     | job 6745263987 has state=finished
[2025-07-26 19:56:12] 2025-07-26 23:55:35,346 | INFO     | preparing for final server update for job 6745263987 in state='finished'
[2025-07-26 19:56:12] 2025-07-26 23:55:35,347 | INFO     | this job has now completed (state=finished)
[2025-07-26 19:56:12] 2025-07-26 23:55:35,348 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 19:56:12] 2025-07-26 23:55:35,348 | INFO     | log transfer has been attempted: DONE
[2025-07-26 19:56:12] 2025-07-26 23:55:35,348 | INFO     | job 6745263987 has finished - writing final server update
[2025-07-26 19:56:12] 2025-07-26 23:55:35,349 | INFO     | total number of processed events: 400 (read)
[2025-07-26 19:56:12] 2025-07-26 23:55:35,350 | INFO     | executing command: lscpu
[2025-07-26 19:56:12] 2025-07-26 23:55:35,404 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 19:56:12] 2025-07-26 23:55:36,922 | INFO     | monitor loop #424: job 0:6745263987 is in state 'finished'
[2025-07-26 19:56:12] 2025-07-26 23:55:36,922 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:56:12] 2025-07-26 23:55:39,425 | INFO     | monitor loop #425: job 0:6745263987 is in state 'finished'
[2025-07-26 19:56:12] 2025-07-26 23:55:39,425 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:56:12] 2025-07-26 23:55:39,659 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 19:56:12] 2025-07-26 23:55:39,679 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2780.0575749999985
[2025-07-26 19:56:12] 2025-07-26 23:55:39,687 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745263987/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 19:56:12] 2025-07-26 23:55:39,688 | INFO     | extracted standard info from prmon json
[2025-07-26 19:56:12] 2025-07-26 23:55:39,688 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 19:56:12] 2025-07-26 23:55:39,688 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 19:56:12] 2025-07-26 23:55:39,689 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 19:56:12] 2025-07-26 23:55:39,689 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 19:56:12] 2025-07-26 23:55:39,693 | INFO     | fitting pss+swap vs Time
[2025-07-26 19:56:12] 2025-07-26 23:55:39,693 | INFO     | sum of square deviations: 204163828.0
[2025-07-26 19:56:12] 2025-07-26 23:55:39,694 | INFO     | sum of deviations: -21197365373.000008
[2025-07-26 19:56:12] 2025-07-26 23:55:39,694 | INFO     | mean x: 1753571341.0
[2025-07-26 19:56:12] 2025-07-26 23:55:39,694 | INFO     | mean y: 2531726.5517241377
[2025-07-26 19:56:12] 2025-07-26 23:55:39,694 | INFO     | -- intersect: 182067556598.6294
[2025-07-26 19:56:12] 2025-07-26 23:55:39,695 | INFO     | intersect: 182067556598.6294
[2025-07-26 19:56:12] 2025-07-26 23:55:39,695 | INFO     | chi2: 0.22797799967628854
[2025-07-26 19:56:12] 2025-07-26 23:55:39,695 | INFO     | -- intersect: 182067556598.6294
[2025-07-26 19:56:12] 2025-07-26 23:55:39,695 | INFO     | current memory leak: -103.83 B/s (using 87 data points, chi2=0.23)
[2025-07-26 19:56:12] 2025-07-26 23:55:39,696 | INFO     | could have reported an average CPU frequency of 2680 MHz (7 samples)
[2025-07-26 19:56:12] 2025-07-26 23:55:39,696 | INFO     | ..............................
[2025-07-26 19:56:12] 2025-07-26 23:55:39,696 | INFO     | . Timing measurements:
[2025-07-26 19:56:12] 2025-07-26 23:55:39,696 | INFO     | . get job = 0 s
[2025-07-26 19:56:12] 2025-07-26 23:55:39,696 | INFO     | . initial setup = 3 s
[2025-07-26 19:56:12] 2025-07-26 23:55:39,696 | INFO     | . payload setup = 7 s
[2025-07-26 19:56:12] 2025-07-26 23:55:39,697 | INFO     | . stage-in = 0 s
[2025-07-26 19:56:12] 2025-07-26 23:55:39,697 | INFO     | . payload execution = 5718 s
[2025-07-26 19:56:12] 2025-07-26 23:55:39,697 | INFO     | . stage-out = 1 s
[2025-07-26 19:56:12] 2025-07-26 23:55:39,697 | INFO     | . log creation = 0 s
[2025-07-26 19:56:12] 2025-07-26 23:55:39,697 | INFO     | ..............................
[2025-07-26 19:56:12] 2025-07-26 23:55:40,178 | INFO     | 
[2025-07-26 19:56:12] 2025-07-26 23:55:40,178 | INFO     | job summary report
[2025-07-26 19:56:12] 2025-07-26 23:55:40,178 | INFO     | --------------------------------------------------
[2025-07-26 19:56:12] 2025-07-26 23:55:40,178 | INFO     | PanDA job id: 6745263987
[2025-07-26 19:56:12] 2025-07-26 23:55:40,178 | INFO     | task id: 45743349
[2025-07-26 19:56:12] 2025-07-26 23:55:40,179 | INFO     | errors: (none)
[2025-07-26 19:56:12] 2025-07-26 23:55:40,179 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 19:56:12] 2025-07-26 23:55:40,179 | INFO     | pilot state: finished 
[2025-07-26 19:56:12] 2025-07-26 23:55:40,179 | INFO     | transexitcode: 0
[2025-07-26 19:56:12] 2025-07-26 23:55:40,179 | INFO     | exeerrorcode: 0
[2025-07-26 19:56:12] 2025-07-26 23:55:40,179 | INFO     | exeerrordiag: 
[2025-07-26 19:56:12] 2025-07-26 23:55:40,179 | INFO     | exitcode: 0
[2025-07-26 19:56:12] 2025-07-26 23:55:40,179 | INFO     | exitmsg: OK
[2025-07-26 19:56:12] 2025-07-26 23:55:40,179 | INFO     | cpuconsumptiontime: 52351 s
[2025-07-26 19:56:12] 2025-07-26 23:55:40,180 | INFO     | nevents: 400
[2025-07-26 19:56:12] 2025-07-26 23:55:40,180 | INFO     | neventsw: 0
[2025-07-26 19:56:12] 2025-07-26 23:55:40,180 | INFO     | pid: 3607931
[2025-07-26 19:56:12] 2025-07-26 23:55:40,180 | INFO     | pgrp: 3607931
[2025-07-26 19:56:12] 2025-07-26 23:55:40,180 | INFO     | corecount: 10
[2025-07-26 19:56:12] 2025-07-26 23:55:40,180 | INFO     | event service: False
[2025-07-26 19:56:12] 2025-07-26 23:55:40,180 | INFO     | sizes: {0: 2397304, 1: 2397503, 6: 2397765, 11: 2397793, 5730: 2424354, 5732: 2433352, 5733: 2433536, 5740: 2433730}
[2025-07-26 19:56:12] 2025-07-26 23:55:40,180 | INFO     | --------------------------------------------------
[2025-07-26 19:56:12] 2025-07-26 23:55:40,180 | INFO     | 
[2025-07-26 19:56:12] 2025-07-26 23:55:40,181 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 19:56:12] 2025-07-26 23:55:40,204 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,205 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,205 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,205 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,205 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,205 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,205 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,206 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,206 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,206 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,206 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,206 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,206 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,206 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,206 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,207 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,207 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,207 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 19:56:12] 2025-07-26 23:55:40,207 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,207 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 19:56:12] 2025-07-26 23:55:40,207 | INFO     | job 6745263987 has completed (purged errors)
[2025-07-26 19:56:12] 2025-07-26 23:55:40,207 | INFO     | overall cleanup function is called
[2025-07-26 19:56:12] 2025-07-26 23:55:41,216 | INFO     | --- collectZombieJob: --- 10, [3607931]
[2025-07-26 19:56:12] 2025-07-26 23:55:41,216 | INFO     | zombie collector waiting for pid 3607931
[2025-07-26 19:56:12] 2025-07-26 23:55:41,216 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 19:56:12] 2025-07-26 23:55:41,216 | INFO     | collected zombie processes
[2025-07-26 19:56:12] 2025-07-26 23:55:41,216 | INFO     | will attempt to kill all subprocesses of pid=3607931
[2025-07-26 19:56:12] 2025-07-26 23:55:41,532 | INFO     | process IDs to be killed: [3607931] (in reverse order)
[2025-07-26 19:56:12] 2025-07-26 23:55:41,625 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 19:56:12] 2025-07-26 23:55:41,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 19:56:12] 2025-07-26 23:55:41,635 | INFO     | did not find any defunct processes belonging to 3607931
[2025-07-26 19:56:12] 2025-07-26 23:55:41,645 | INFO     | did not find any defunct processes belonging to 3607931
[2025-07-26 19:56:12] 2025-07-26 23:55:41,646 | INFO     | ready for new job
[2025-07-26 19:56:12] 2025-07-26 23:55:41,646 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 19:56:12] 2025-07-26 23:55:41,649 | INFO     | ***************************************
[2025-07-26 19:56:12] 2025-07-26 23:55:41,649 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 19:56:12] 2025-07-26 23:55:41,649 | INFO     | ***************************************
[2025-07-26 19:56:12] 2025-07-26 23:55:41,649 | INFO     | 
[2025-07-26 19:56:12] 2025-07-26 23:55:41,662 | INFO     | architecture information:
[2025-07-26 19:56:12] 2025-07-26 23:55:41,663 | INFO     | executing command: cat /etc/os-release
[2025-07-26 19:56:12] 2025-07-26 23:55:41,680 | INFO     | cat /etc/os-release:
[2025-07-26 19:56:12] NAME="CentOS Linux"
[2025-07-26 19:56:12] VERSION="7 (Core)"
[2025-07-26 19:56:12] ID="centos"
[2025-07-26 19:56:12] ID_LIKE="rhel fedora"
[2025-07-26 19:56:12] VERSION_ID="7"
[2025-07-26 19:56:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 19:56:12] ANSI_COLOR="0;31"
[2025-07-26 19:56:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 19:56:12] HOME_URL="https://www.centos.org/"
[2025-07-26 19:56:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 19:56:12] 
[2025-07-26 19:56:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 19:56:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 19:56:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 19:56:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 19:56:12] 
[2025-07-26 19:56:12] 2025-07-26 23:55:41,681 | INFO     | ***************************************
[2025-07-26 19:56:12] 2025-07-26 23:55:42,183 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 19:56:12] 2025-07-26 23:55:42,202 | INFO     | sufficient remaining disk space (76699140096 B)
[2025-07-26 19:56:12] 2025-07-26 23:55:42,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 19:56:12] 2025-07-26 23:55:42,203 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 19:56:12] 2025-07-26 23:55:42,203 | INFO     | update_server=False
[2025-07-26 19:56:12] 2025-07-26 23:55:42,203 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 19:56:12] 2025-07-26 23:55:42,299 | INFO     | all job control threads have been joined
[2025-07-26 19:56:12] 2025-07-26 23:55:42,474 | INFO     | all data control threads have been joined
[2025-07-26 19:56:12] 2025-07-26 23:55:42,933 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 19:56:12] 2025-07-26 23:55:42,933 | INFO     | aborting loop
[2025-07-26 19:56:12] 2025-07-26 23:55:43,176 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 19:56:12] 2025-07-26 23:55:43,194 | INFO     | all payload control threads have been joined
[2025-07-26 19:56:12] 2025-07-26 23:55:43,208 | INFO     | [job] retrieve thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:43,302 | INFO     | [job] control thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:43,360 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:43,446 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:43,479 | INFO     | [data] control thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:43,864 | INFO     | [data] copytool_in thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:43,938 | INFO     | [job] job monitor thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:43,954 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 19:56:12] 2025-07-26 23:55:44,199 | INFO     | [payload] control thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:44,259 | INFO     | [job] validate thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:44,328 | INFO     | [payload] validate_post thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:44,340 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:44,430 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:44,778 | INFO     | [payload] failed_post thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:44,834 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 19:56:12] 2025-07-26 23:55:45,181 | INFO     | [data] copytool_out thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:45,840 | INFO     | [job] queue monitor thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:47,960 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 19:56:12] 2025-07-26 23:55:48,622 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140085745395520)>', '<ExcThread(monitor, started 140085106300672)>']
[2025-07-26 19:56:12] 2025-07-26 23:55:53,648 | INFO     | all workflow threads have been joined
[2025-07-26 19:56:12] 2025-07-26 23:55:53,648 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 19:56:12] 2025-07-26 23:55:53,649 | INFO     | traces error code: 0
[2025-07-26 19:56:12] 2025-07-26 23:55:53,649 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 19:56:12] 2025-07-26 23:56:12,065 | INFO     | PID=3600513 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 19:56:12] 2025-07-26 23:56:12,065 | INFO     | .. there are 13 such processes running
[2025-07-26 19:56:12] 2025-07-26 23:56:12,067 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 19:56:12] 2025-07-26 23:56:12,067 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 19:56:12] 2025-07-26 23:56:12,067 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 19:56:12] 2025-07-26 23:56:12,067 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 19:56:12] 2025-07-26 23:56:12,067 | INFO     | [monitor] control thread has ended
[2025-07-26 19:56:12] 2025-07-26 23:56:12,243 [wrapper] ==== pilot stdout END ====
[2025-07-26 19:56:12] 2025-07-26 23:56:12,247 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 19:56:12] 2025-07-26 23:56:12,250 [wrapper] pilotpid: 3600513
[2025-07-26 19:56:12] 2025-07-26 23:56:12,254 [wrapper] Pilot exit status: 0
[2025-07-26 19:56:12] 2025-07-26 23:56:12,266 [wrapper] pandaids: 6745263987
[2025-07-26 19:56:12] 2025-07-26 23:56:12,329 [wrapper] cleanup supervisor_pilot 3766888 3600514
[2025-07-26 19:56:12] 2025-07-26 23:56:12,332 [wrapper] Test setup, not cleaning
[2025-07-26 19:56:12] 2025-07-26 23:56:12,335 [wrapper] apfmon messages muted
[2025-07-26 19:56:12] 2025-07-26 23:56:12,338 [wrapper] ==== wrapper stdout END ====
[2025-07-26 19:56:12] 2025-07-26 23:56:12,341 [wrapper] ==== wrapper stderr END ====
[2025-07-26 19:56:12]  *** Error codes and diagnostics ***
[2025-07-26 19:56:12]     "exeErrorCode": 0,
[2025-07-26 19:56:12]     "exeErrorDiag": "",
[2025-07-26 19:56:12]     "pilotErrorCode": 0,
[2025-07-26 19:56:12]     "pilotErrorDiag": "",
[2025-07-26 19:56:12]  *** Listing of results directory ***
[2025-07-26 19:56:12] total 348072
[2025-07-26 19:56:12] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 13:01 pilot3.tar.gz
[2025-07-26 19:56:12] -rwx------. 1 boincer umatlas     36292 Jul 26 13:07 runpilot2-wrapper.sh
[2025-07-26 19:56:12] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 13:07 queuedata.json
[2025-07-26 19:56:12] -rw-r--r--. 1 boincer umatlas       100 Jul 26 18:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 19:56:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 18:19 run_atlas
[2025-07-26 19:56:12] -rw-r--r--. 1 boincer umatlas       105 Jul 26 18:19 job.xml
[2025-07-26 19:56:12] -rw-r--r--. 2 boincer umatlas 145666182 Jul 26 18:19 EVNT.45743347._002457.pool.root.1
[2025-07-26 19:56:12] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 18:19 start_atlas.sh
[2025-07-26 19:56:12] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 18:19 shared
[2025-07-26 19:56:12] -rw-r--r--. 2 boincer umatlas    542894 Jul 26 18:19 input.tar.gz
[2025-07-26 19:56:12] -rw-r--r--. 1 boincer umatlas         0 Jul 26 18:19 boinc_lockfile
[2025-07-26 19:56:12] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 18:19 pandaJob.out
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas    980125 Jul 26 18:19 agis_schedconf.cvmfs.json
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas   1593052 Jul 26 18:19 agis_ddmendpoints.agis.ALL.json
[2025-07-26 19:56:12] drwx------. 4 boincer umatlas      4096 Jul 26 18:19 pilot3
[2025-07-26 19:56:12] -rw-r--r--. 1 boincer umatlas      6659 Jul 26 19:54 init_data.xml
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas 205075578 Jul 26 19:54 HITS.45743349._041388.pool.root.1
[2025-07-26 19:56:12] -rw-r--r--. 1 boincer umatlas       529 Jul 26 19:55 boinc_task_state.xml
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas      1036 Jul 26 19:55 memory_monitor_summary.json
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas    344856 Jul 26 19:55 log.45743349._041388.job.log.tgz.1
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas      7819 Jul 26 19:55 heartbeat.json
[2025-07-26 19:56:12] -rw-r--r--. 1 boincer umatlas        27 Jul 26 19:56 wrapper_checkpoint.txt
[2025-07-26 19:56:12] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 19:56 boinc_mmap_file
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas        95 Jul 26 19:56 pilot_heartbeat.json
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas       823 Jul 26 19:56 pilotlog.txt
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas    557968 Jul 26 19:56 log.45743349._041388.job.log.1
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas       357 Jul 26 19:56 output.list
[2025-07-26 19:56:12] -rw-r--r--. 1 boincer umatlas       620 Jul 26 19:56 runtime_log
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas    921600 Jul 26 19:56 result.tar.gz
[2025-07-26 19:56:12] -rw-r--r--. 1 boincer umatlas      8652 Jul 26 19:56 runtime_log.err
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas       650 Jul 26 19:56 9YMODmlXxz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmagSLDmOs0VHo.diag
[2025-07-26 19:56:12] -rw-r--r--. 1 boincer umatlas     21782 Jul 26 19:56 stderr.txt
[2025-07-26 19:56:12] HITS file was successfully produced:
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas 205075578 Jul 26 19:54 shared/HITS.pool.root.1
[2025-07-26 19:56:12]  *** Contents of shared directory: ***
[2025-07-26 19:56:12] total 343980
[2025-07-26 19:56:12] -rw-r--r--. 2 boincer umatlas 145666182 Jul 26 18:19 ATLAS.root_0
[2025-07-26 19:56:12] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 18:19 start_atlas.sh
[2025-07-26 19:56:12] -rw-r--r--. 2 boincer umatlas    542894 Jul 26 18:19 input.tar.gz
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas 205075578 Jul 26 19:54 HITS.pool.root.1
[2025-07-26 19:56:12] -rw-------. 1 boincer umatlas    921600 Jul 26 19:56 result.tar.gz
19:56:14 (3596817): run_atlas exited; CPU time 52408.280108
19:56:14 (3596817): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN