Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:45:54 (2821177): wrapper (7.7.26015): starting
19:45:54 (2821177): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 19:45:54] Arguments: --nthreads 12
[2025-07-26 19:45:54] Threads: 12
[2025-07-26 19:45:54] Checking for CVMFS
[2025-07-26 19:45:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 19:45:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 19:45:54] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 19:45:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 19:45:55] 2.13.0.0 1889558 17603 314868 148793 2 334 38778503 40960000 12577 16776704 1 50923009 99.816 41483850 29414 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 19:45:55] CVMFS is ok
[2025-07-26 19:45:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 19:45:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 19:45:55] Further information can be found at the LHC@home message board.
[2025-07-26 19:45:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 19:45:55] Checking for apptainer binary...
[2025-07-26 19:45:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 19:45:55] Running /usr/bin/apptainer --version
[2025-07-26 19:45:55] apptainer version 1.4.1-1.el9
[2025-07-26 19:45:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 19:45:55] c6-5-7-1.aglt2.org
[2025-07-26 19:45:55] apptainer works
[2025-07-26 19:45:55] Set ATHENA_PROC_NUMBER=12
[2025-07-26 19:45:55] Set ATHENA_CORE_NUMBER=12
[2025-07-26 19:45:55] Starting ATLAS job with PandaID=6745264034
[2025-07-26 19:45:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 21:25:27]  *** The last 200 lines of the pilot log: ***
[2025-07-26 21:25:27]  protocol_id=None
[2025-07-26 21:25:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 21:25:27]  replicas=None
[2025-07-26 21:25:27]  scope=mc23_13p6TeV
[2025-07-26 21:25:27]  status=None
[2025-07-26 21:25:27]  status_code=0
[2025-07-26 21:25:27]  storage_token=
[2025-07-26 21:25:27]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745264034/log.45743349._041435.job.log.tgz.1
[2025-07-26 21:25:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/ef/log.45743349._041435.job.log.tgz.1
[2025-07-26 21:25:27]  workdir=None
[2025-07-26 21:25:27] ]
[2025-07-26 21:25:27] 2025-07-27 01:24:45,280 | INFO     | transferring file log.45743349._041435.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745264034/log.45743349._041435.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 21:25:27] 2025-07-27 01:24:45,280 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745264034/log.45743349._041435.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._041435.job
[2025-07-26 21:25:27] 2025-07-27 01:24:45,308 | INFO     | adding to output.list: log.45743349._041435.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/ef/log.45743349._041435.job.log.tg
[2025-07-26 21:25:27] 2025-07-27 01:24:45,310 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 21:25:27] 2025-07-27 01:24:45,310 | INFO     | summary of transferred files:
[2025-07-26 21:25:27] 2025-07-27 01:24:45,310 | INFO     |  -- lfn=log.45743349._041435.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 21:25:27] 2025-07-27 01:24:45,310 | INFO     | stage-out finished correctly
[2025-07-26 21:25:27] 2025-07-27 01:24:46,433 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 21:25:27] 2025-07-27 01:24:47,518 | WARNING  | process 2832567 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 21:25:27] 2025-07-27 01:24:47,519 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745264034/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 21:25:27] 2025-07-27 01:24:47,761 | INFO     | number of running child processes to parent process 2832567: 1
[2025-07-26 21:25:27] 2025-07-27 01:24:47,761 | INFO     | maximum number of monitored processes: 6
[2025-07-26 21:25:27] 2025-07-27 01:24:49,215 | INFO     | job 6745264034 has state=finished
[2025-07-26 21:25:27] 2025-07-27 01:24:49,216 | INFO     | preparing for final server update for job 6745264034 in state='finished'
[2025-07-26 21:25:27] 2025-07-27 01:24:49,216 | INFO     | this job has now completed (state=finished)
[2025-07-26 21:25:27] 2025-07-27 01:24:49,217 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 21:25:27] 2025-07-27 01:24:49,217 | INFO     | log transfer has been attempted: DONE
[2025-07-26 21:25:27] 2025-07-27 01:24:49,217 | INFO     | job 6745264034 has finished - writing final server update
[2025-07-26 21:25:27] 2025-07-27 01:24:49,217 | INFO     | total number of processed events: 400 (read)
[2025-07-26 21:25:27] 2025-07-27 01:24:49,218 | INFO     | executing command: lscpu
[2025-07-26 21:25:27] 2025-07-27 01:24:49,293 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 21:25:27] 2025-07-27 01:24:50,266 | INFO     | monitor loop #391: job 0:6745264034 is in state 'finished'
[2025-07-26 21:25:27] 2025-07-27 01:24:50,267 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 21:25:27] 2025-07-27 01:24:52,774 | INFO     | monitor loop #392: job 0:6745264034 is in state 'finished'
[2025-07-26 21:25:27] 2025-07-27 01:24:52,774 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 21:25:27] 2025-07-27 01:24:55,155 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 21:25:27] 2025-07-27 01:24:55,167 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2735.9247321428566
[2025-07-26 21:25:27] 2025-07-27 01:24:55,178 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745264034/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 21:25:27] 2025-07-27 01:24:55,179 | INFO     | extracted standard info from prmon json
[2025-07-26 21:25:27] 2025-07-27 01:24:55,179 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 21:25:27] 2025-07-27 01:24:55,179 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 21:25:27] 2025-07-27 01:24:55,180 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 21:25:27] 2025-07-27 01:24:55,180 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 21:25:27] 2025-07-27 01:24:55,182 | INFO     | fitting pss+swap vs Time
[2025-07-26 21:25:27] 2025-07-27 01:24:55,183 | INFO     | sum of square deviations: 226055250.62222216
[2025-07-26 21:25:27] 2025-07-27 01:24:55,183 | INFO     | sum of deviations: -15345040957.044441
[2025-07-26 21:25:27] 2025-07-27 01:24:55,183 | INFO     | mean x: 1753576617.7555556
[2025-07-26 21:25:27] 2025-07-27 01:24:55,184 | INFO     | mean y: 2490269.5888888887
[2025-07-26 21:25:27] 2025-07-27 01:24:55,184 | INFO     | -- intersect: 119038455798.84624
[2025-07-26 21:25:27] 2025-07-27 01:24:55,184 | INFO     | intersect: 119038455798.84624
[2025-07-26 21:25:27] 2025-07-27 01:24:55,184 | INFO     | chi2: 0.19210789025060926
[2025-07-26 21:25:27] 2025-07-27 01:24:55,184 | INFO     | -- intersect: 119038455798.84624
[2025-07-26 21:25:27] 2025-07-27 01:24:55,184 | INFO     | current memory leak: -67.88 B/s (using 90 data points, chi2=0.19)
[2025-07-26 21:25:27] 2025-07-27 01:24:55,185 | INFO     | could have reported an average CPU frequency of 2686 MHz (7 samples)
[2025-07-26 21:25:27] 2025-07-27 01:24:55,185 | INFO     | ..............................
[2025-07-26 21:25:27] 2025-07-27 01:24:55,185 | INFO     | . Timing measurements:
[2025-07-26 21:25:27] 2025-07-27 01:24:55,185 | INFO     | . get job = 0 s
[2025-07-26 21:25:27] 2025-07-27 01:24:55,185 | INFO     | . initial setup = 2 s
[2025-07-26 21:25:27] 2025-07-27 01:24:55,185 | INFO     | . payload setup = 8 s
[2025-07-26 21:25:27] 2025-07-27 01:24:55,185 | INFO     | . stage-in = 0 s
[2025-07-26 21:25:27] 2025-07-27 01:24:55,186 | INFO     | . payload execution = 5887 s
[2025-07-26 21:25:27] 2025-07-27 01:24:55,186 | INFO     | . stage-out = 0 s
[2025-07-26 21:25:27] 2025-07-27 01:24:55,186 | INFO     | . log creation = 0 s
[2025-07-26 21:25:27] 2025-07-27 01:24:55,186 | INFO     | ..............................
[2025-07-26 21:25:27] 2025-07-27 01:24:55,281 | INFO     | 
[2025-07-26 21:25:27] 2025-07-27 01:24:55,281 | INFO     | job summary report
[2025-07-26 21:25:27] 2025-07-27 01:24:55,281 | INFO     | --------------------------------------------------
[2025-07-26 21:25:27] 2025-07-27 01:24:55,281 | INFO     | PanDA job id: 6745264034
[2025-07-26 21:25:27] 2025-07-27 01:24:55,281 | INFO     | task id: 45743349
[2025-07-26 21:25:27] 2025-07-27 01:24:55,281 | INFO     | errors: (none)
[2025-07-26 21:25:27] 2025-07-27 01:24:55,281 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 21:25:27] 2025-07-27 01:24:55,282 | INFO     | pilot state: finished 
[2025-07-26 21:25:27] 2025-07-27 01:24:55,282 | INFO     | transexitcode: 0
[2025-07-26 21:25:27] 2025-07-27 01:24:55,282 | INFO     | exeerrorcode: 0
[2025-07-26 21:25:27] 2025-07-27 01:24:55,282 | INFO     | exeerrordiag: 
[2025-07-26 21:25:27] 2025-07-27 01:24:55,282 | INFO     | exitcode: 0
[2025-07-26 21:25:27] 2025-07-27 01:24:55,282 | INFO     | exitmsg: OK
[2025-07-26 21:25:27] 2025-07-27 01:24:55,282 | INFO     | cpuconsumptiontime: 46672 s
[2025-07-26 21:25:27] 2025-07-27 01:24:55,282 | INFO     | nevents: 400
[2025-07-26 21:25:27] 2025-07-27 01:24:55,282 | INFO     | neventsw: 0
[2025-07-26 21:25:27] 2025-07-27 01:24:55,282 | INFO     | pid: 2832567
[2025-07-26 21:25:27] 2025-07-27 01:24:55,283 | INFO     | pgrp: 2832567
[2025-07-26 21:25:27] 2025-07-27 01:24:55,283 | INFO     | corecount: 12
[2025-07-26 21:25:27] 2025-07-27 01:24:55,283 | INFO     | event service: False
[2025-07-26 21:25:27] 2025-07-27 01:24:55,283 | INFO     | sizes: {0: 2397475, 5: 2397737, 11: 2397793, 5900: 2424466, 5901: 2433464, 5903: 2433520, 5911: 2433842}
[2025-07-26 21:25:27] 2025-07-27 01:24:55,283 | INFO     | --------------------------------------------------
[2025-07-26 21:25:27] 2025-07-27 01:24:55,283 | INFO     | 
[2025-07-26 21:25:27] 2025-07-27 01:24:55,284 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 21:25:27] 2025-07-27 01:24:55,308 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,309 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,309 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,309 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,309 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,309 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,309 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,309 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,309 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,309 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,310 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,310 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,310 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,310 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,310 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,310 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,310 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,310 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 21:25:27] 2025-07-27 01:24:55,310 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,310 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 21:25:27] 2025-07-27 01:24:55,311 | INFO     | job 6745264034 has completed (purged errors)
[2025-07-26 21:25:27] 2025-07-27 01:24:55,311 | INFO     | overall cleanup function is called
[2025-07-26 21:25:27] 2025-07-27 01:24:56,320 | INFO     | --- collectZombieJob: --- 10, [2832567]
[2025-07-26 21:25:27] 2025-07-27 01:24:56,320 | INFO     | zombie collector waiting for pid 2832567
[2025-07-26 21:25:27] 2025-07-27 01:24:56,320 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 21:25:27] 2025-07-27 01:24:56,320 | INFO     | collected zombie processes
[2025-07-26 21:25:27] 2025-07-27 01:24:56,320 | INFO     | will attempt to kill all subprocesses of pid=2832567
[2025-07-26 21:25:27] 2025-07-27 01:24:56,572 | INFO     | process IDs to be killed: [2832567] (in reverse order)
[2025-07-26 21:25:27] 2025-07-27 01:24:56,660 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 21:25:27] 2025-07-27 01:24:56,660 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 21:25:27] 2025-07-27 01:24:56,674 | INFO     | did not find any defunct processes belonging to 2832567
[2025-07-26 21:25:27] 2025-07-27 01:24:56,689 | INFO     | did not find any defunct processes belonging to 2832567
[2025-07-26 21:25:27] 2025-07-27 01:24:56,690 | INFO     | ready for new job
[2025-07-26 21:25:27] 2025-07-27 01:24:56,690 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 21:25:27] 2025-07-27 01:24:56,693 | INFO     | ***************************************
[2025-07-26 21:25:27] 2025-07-27 01:24:56,694 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 21:25:27] 2025-07-27 01:24:56,694 | INFO     | ***************************************
[2025-07-26 21:25:27] 2025-07-27 01:24:56,694 | INFO     | 
[2025-07-26 21:25:27] 2025-07-27 01:24:56,711 | INFO     | architecture information:
[2025-07-26 21:25:27] 2025-07-27 01:24:56,711 | INFO     | executing command: cat /etc/os-release
[2025-07-26 21:25:27] 2025-07-27 01:24:56,741 | INFO     | cat /etc/os-release:
[2025-07-26 21:25:27] NAME="CentOS Linux"
[2025-07-26 21:25:27] VERSION="7 (Core)"
[2025-07-26 21:25:27] ID="centos"
[2025-07-26 21:25:27] ID_LIKE="rhel fedora"
[2025-07-26 21:25:27] VERSION_ID="7"
[2025-07-26 21:25:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 21:25:27] ANSI_COLOR="0;31"
[2025-07-26 21:25:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 21:25:27] HOME_URL="https://www.centos.org/"
[2025-07-26 21:25:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 21:25:27] 
[2025-07-26 21:25:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 21:25:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 21:25:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 21:25:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 21:25:27] 
[2025-07-26 21:25:27] 2025-07-27 01:24:56,741 | INFO     | ***************************************
[2025-07-26 21:25:27] 2025-07-27 01:24:57,245 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 21:25:27] 2025-07-27 01:24:57,284 | INFO     | sufficient remaining disk space (71439482880 B)
[2025-07-26 21:25:27] 2025-07-27 01:24:57,285 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 21:25:27] 2025-07-27 01:24:57,285 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 21:25:27] 2025-07-27 01:24:57,285 | INFO     | update_server=False
[2025-07-26 21:25:27] 2025-07-27 01:24:57,285 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 21:25:27] 2025-07-27 01:24:57,285 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 21:25:27] 2025-07-27 01:24:57,290 | INFO     | aborting loop
[2025-07-26 21:25:27] 2025-07-27 01:24:57,290 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 21:25:27] 2025-07-27 01:24:57,286 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 21:25:27] 2025-07-27 01:24:57,423 | INFO     | all job control threads have been joined
[2025-07-26 21:25:27] 2025-07-27 01:24:58,266 | INFO     | all data control threads have been joined
[2025-07-26 21:25:27] 2025-07-27 01:24:58,291 | INFO     | [job] retrieve thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:24:58,295 | INFO     | [job] job monitor thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:24:58,296 | INFO     | [job] queue monitor thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:24:58,429 | INFO     | [job] control thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:24:58,434 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 21:25:27] 2025-07-27 01:24:58,468 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:24:58,518 | INFO     | all payload control threads have been joined
[2025-07-26 21:25:27] 2025-07-27 01:24:58,533 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:24:58,548 | INFO     | [payload] failed_post thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:24:58,681 | INFO     | [job] validate thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:24:59,181 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:24:59,275 | INFO     | [data] control thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:24:59,326 | INFO     | [data] copytool_in thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:24:59,503 | INFO     | [payload] validate_post thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:24:59,524 | INFO     | [payload] control thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:24:59,698 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:25:00,439 | INFO     | [data] copytool_out thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:25:01,318 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 21:25:27] 2025-07-27 01:25:01,760 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140706388256576)>', '<ExcThread(monitor, started 140705636787968)>']
[2025-07-26 21:25:27] 2025-07-27 01:25:06,786 | INFO     | all workflow threads have been joined
[2025-07-26 21:25:27] 2025-07-27 01:25:06,786 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 21:25:27] 2025-07-27 01:25:06,786 | INFO     | traces error code: 0
[2025-07-26 21:25:27] 2025-07-27 01:25:06,787 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 21:25:27] 2025-07-27 01:25:27,545 | INFO     | PID=2824998 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 21:25:27] 2025-07-27 01:25:27,547 | INFO     | .. there are 19 such processes running
[2025-07-26 21:25:27] 2025-07-27 01:25:27,547 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 21:25:27] 2025-07-27 01:25:27,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 21:25:27] 2025-07-27 01:25:27,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 21:25:27] 2025-07-27 01:25:27,548 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 21:25:27] 2025-07-27 01:25:27,548 | CRITICAL | thread 'MainThread' is not alive
[2025-07-26 21:25:27] 2025-07-27 01:25:27,548 | INFO     | [monitor] control thread has ended
[2025-07-26 21:25:27] 2025-07-27 01:25:27,761 [wrapper] ==== pilot stdout END ====
[2025-07-26 21:25:27] 2025-07-27 01:25:27,766 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 21:25:27] 2025-07-27 01:25:27,771 [wrapper] pilotpid: 2824998
[2025-07-26 21:25:27] 2025-07-27 01:25:27,780 [wrapper] Pilot exit status: 0
[2025-07-26 21:25:27] 2025-07-27 01:25:27,791 [wrapper] pandaids: 6745264034
[2025-07-26 21:25:27] 2025-07-27 01:25:27,857 [wrapper] cleanup supervisor_pilot 3155751 2824999
[2025-07-26 21:25:27] 2025-07-27 01:25:27,862 [wrapper] Test setup, not cleaning
[2025-07-26 21:25:27] 2025-07-27 01:25:27,868 [wrapper] apfmon messages muted
[2025-07-26 21:25:27] 2025-07-27 01:25:27,873 [wrapper] ==== wrapper stdout END ====
[2025-07-26 21:25:27] 2025-07-27 01:25:27,879 [wrapper] ==== wrapper stderr END ====
[2025-07-26 21:25:27]  *** Error codes and diagnostics ***
[2025-07-26 21:25:27]     "exeErrorCode": 0,
[2025-07-26 21:25:27]     "exeErrorDiag": "",
[2025-07-26 21:25:27]     "pilotErrorCode": 0,
[2025-07-26 21:25:27]     "pilotErrorDiag": "",
[2025-07-26 21:25:27]  *** Listing of results directory ***
[2025-07-26 21:25:27] total 356244
[2025-07-26 21:25:27] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 13:01 pilot3.tar.gz
[2025-07-26 21:25:27] -rwx------. 1 boincer umatlas     36292 Jul 26 13:15 runpilot2-wrapper.sh
[2025-07-26 21:25:27] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 13:15 queuedata.json
[2025-07-26 21:25:27] -rw-r--r--. 1 boincer umatlas       100 Jul 26 19:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 21:25:27] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 19:45 run_atlas
[2025-07-26 21:25:27] -rw-r--r--. 1 boincer umatlas       105 Jul 26 19:45 job.xml
[2025-07-26 21:25:27] -rw-r--r--. 2 boincer umatlas 147412020 Jul 26 19:45 EVNT.45743347._002460.pool.root.1
[2025-07-26 21:25:27] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 19:45 start_atlas.sh
[2025-07-26 21:25:27] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 19:45 shared
[2025-07-26 21:25:27] -rw-r--r--. 2 boincer umatlas    542890 Jul 26 19:45 input.tar.gz
[2025-07-26 21:25:27] -rw-r--r--. 1 boincer umatlas         0 Jul 26 19:45 boinc_lockfile
[2025-07-26 21:25:27] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 19:45 pandaJob.out
[2025-07-26 21:25:27] -rw-------. 1 boincer umatlas    980117 Jul 26 19:46 agis_schedconf.cvmfs.json
[2025-07-26 21:25:27] -rw-------. 1 boincer umatlas   1593052 Jul 26 19:46 agis_ddmendpoints.agis.ALL.json
[2025-07-26 21:25:27] drwx------. 4 boincer umatlas      4096 Jul 26 19:46 pilot3
[2025-07-26 21:25:27] -rw-r--r--. 1 boincer umatlas      6839 Jul 26 21:19 init_data.xml
[2025-07-26 21:25:27] -rw-------. 1 boincer umatlas 211677254 Jul 26 21:24 HITS.45743349._041435.pool.root.1
[2025-07-26 21:25:27] -rw-r--r--. 1 boincer umatlas       529 Jul 26 21:24 boinc_task_state.xml
[2025-07-26 21:25:27] -rw-------. 1 boincer umatlas      1035 Jul 26 21:24 memory_monitor_summary.json
[2025-07-26 21:25:27] -rw-------. 1 boincer umatlas    375844 Jul 26 21:24 log.45743349._041435.job.log.tgz.1
[2025-07-26 21:25:27] -rw-------. 1 boincer umatlas        95 Jul 26 21:24 pilot_heartbeat.json
[2025-07-26 21:25:27] -rw-------. 1 boincer umatlas      7817 Jul 26 21:24 heartbeat.json
[2025-07-26 21:25:27] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 21:25 boinc_mmap_file
[2025-07-26 21:25:27] -rw-r--r--. 1 boincer umatlas        27 Jul 26 21:25 wrapper_checkpoint.txt
[2025-07-26 21:25:27] -rw-------. 1 boincer umatlas       893 Jul 26 21:25 pilotlog.txt
[2025-07-26 21:25:27] -rw-------. 1 boincer umatlas    537494 Jul 26 21:25 log.45743349._041435.job.log.1
[2025-07-26 21:25:27] -rw-------. 1 boincer umatlas       357 Jul 26 21:25 output.list
[2025-07-26 21:25:27] -rw-r--r--. 1 boincer umatlas       620 Jul 26 21:25 runtime_log
[2025-07-26 21:25:27] -rw-------. 1 boincer umatlas    931840 Jul 26 21:25 result.tar.gz
[2025-07-26 21:25:27] -rw-r--r--. 1 boincer umatlas      8662 Jul 26 21:25 runtime_log.err
[2025-07-26 21:25:27] -rw-------. 1 boincer umatlas       653 Jul 26 21:25 Gg9KDmmfxz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtgSLDmDJNEIo.diag
[2025-07-26 21:25:27] -rw-r--r--. 1 boincer umatlas     21851 Jul 26 21:25 stderr.txt
[2025-07-26 21:25:28] HITS file was successfully produced:
[2025-07-26 21:25:28] -rw-------. 1 boincer umatlas 211677254 Jul 26 21:24 shared/HITS.pool.root.1
[2025-07-26 21:25:28]  *** Contents of shared directory: ***
[2025-07-26 21:25:28] total 352144
[2025-07-26 21:25:28] -rw-r--r--. 2 boincer umatlas 147412020 Jul 26 19:45 ATLAS.root_0
[2025-07-26 21:25:28] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 19:45 start_atlas.sh
[2025-07-26 21:25:28] -rw-r--r--. 2 boincer umatlas    542890 Jul 26 19:45 input.tar.gz
[2025-07-26 21:25:28] -rw-------. 1 boincer umatlas 211677254 Jul 26 21:24 HITS.pool.root.1
[2025-07-26 21:25:28] -rw-------. 1 boincer umatlas    931840 Jul 26 21:25 result.tar.gz
21:25:49 (2821177): run_atlas exited; CPU time 46780.264850
21:25:49 (2821177): called boinc_finish(0)

</stderr_txt>
]]>

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