Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:53:10 (3836627): wrapper (7.7.26015): starting
17:53:10 (3836627): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 17:53:10] Arguments: --nthreads 8
[2025-07-26 17:53:10] Threads: 8
[2025-07-26 17:53:10] Checking for CVMFS
[2025-07-26 17:53:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 17:53:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 17:53:10] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 17:53:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 17:53:10] 2.12.6.0 557484 17505 252380 148790 3 196 31838499 32935936 15890 16776704 1 81172654 99.579 124223397 19526 http://cvmfs-s1.hpc.swin.edu.au:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 17:53:10] CVMFS is ok
[2025-07-26 17:53:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 17:53:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 17:53:10] Further information can be found at the LHC@home message board.
[2025-07-26 17:53:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 17:53:10] Checking for apptainer binary...
[2025-07-26 17:53:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 17:53:10] Running /usr/bin/apptainer --version
[2025-07-26 17:53:10] apptainer version 1.4.1-1.el9
[2025-07-26 17:53:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 17:53:11] c7-3-34.aglt2.org
[2025-07-26 17:53:11] apptainer works
[2025-07-26 17:53:11] Set ATHENA_PROC_NUMBER=8
[2025-07-26 17:53:11] Set ATHENA_CORE_NUMBER=8
[2025-07-26 17:53:11] Starting ATLAS job with PandaID=6745228865
[2025-07-26 17:53:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 19:24:47]  *** The last 200 lines of the pilot log: ***
[2025-07-26 19:24:47]  mtime=0
[2025-07-26 19:24:47]  protocol_id=None
[2025-07-26 19:24:47]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 19:24:47]  replicas=None
[2025-07-26 19:24:47]  scope=mc23_13p6TeV
[2025-07-26 19:24:47]  status=None
[2025-07-26 19:24:47]  status_code=0
[2025-07-26 19:24:47]  storage_token=
[2025-07-26 19:24:47]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6745228865/log.45743349._038951.job.log.tgz.1
[2025-07-26 19:24:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/f0/log.45743349._038951.job.log.tgz.1
[2025-07-26 19:24:47]  workdir=None
[2025-07-26 19:24:47] ]
[2025-07-26 19:24:47] 2025-07-26 23:24:06,247 | INFO     | transferring file log.45743349._038951.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6745228865/log.45743349._038951.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 19:24:47] 2025-07-26 23:24:06,247 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6745228865/log.45743349._038951.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._038951.job
[2025-07-26 19:24:47] 2025-07-26 23:24:06,269 | INFO     | adding to output.list: log.45743349._038951.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/f0/log.45743349._038951.job.log.tg
[2025-07-26 19:24:47] 2025-07-26 23:24:06,270 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 19:24:47] 2025-07-26 23:24:06,270 | INFO     | summary of transferred files:
[2025-07-26 19:24:47] 2025-07-26 23:24:06,270 | INFO     |  -- lfn=log.45743349._038951.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 19:24:47] 2025-07-26 23:24:06,270 | INFO     | stage-out finished correctly
[2025-07-26 19:24:47] 2025-07-26 23:24:07,832 | INFO     | 5446s have passed since pilot start - server update state is 'RUNNING'
[2025-07-26 19:24:47] 2025-07-26 23:24:07,964 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 19:24:47] 2025-07-26 23:24:08,044 | INFO     | job 6745228865 has state=finished
[2025-07-26 19:24:47] 2025-07-26 23:24:08,044 | INFO     | preparing for final server update for job 6745228865 in state='finished'
[2025-07-26 19:24:47] 2025-07-26 23:24:08,044 | INFO     | this job has now completed (state=finished)
[2025-07-26 19:24:47] 2025-07-26 23:24:08,044 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 19:24:47] 2025-07-26 23:24:08,045 | INFO     | log transfer has been attempted: DONE
[2025-07-26 19:24:47] 2025-07-26 23:24:08,045 | INFO     | job 6745228865 has finished - writing final server update
[2025-07-26 19:24:47] 2025-07-26 23:24:08,045 | INFO     | total number of processed events: 400 (read)
[2025-07-26 19:24:47] 2025-07-26 23:24:08,045 | INFO     | executing command: lscpu
[2025-07-26 19:24:47] 2025-07-26 23:24:08,069 | INFO     | monitor loop #394: job 0:6745228865 is in state 'finished'
[2025-07-26 19:24:47] 2025-07-26 23:24:08,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:24:47] 2025-07-26 23:24:08,126 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 19:24:47] 2025-07-26 23:24:10,573 | INFO     | monitor loop #395: job 0:6745228865 is in state 'finished'
[2025-07-26 19:24:47] 2025-07-26 23:24:10,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:24:47] 2025-07-26 23:24:13,077 | INFO     | monitor loop #396: job 0:6745228865 is in state 'finished'
[2025-07-26 19:24:47] 2025-07-26 23:24:13,078 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:24:47] 2025-07-26 23:24:14,381 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 19:24:47] 2025-07-26 23:24:14,387 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2992.832864583335
[2025-07-26 19:24:47] 2025-07-26 23:24:14,403 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745228865/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 19:24:47] 2025-07-26 23:24:14,404 | INFO     | extracted standard info from prmon json
[2025-07-26 19:24:47] 2025-07-26 23:24:14,404 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 19:24:47] 2025-07-26 23:24:14,404 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 19:24:47] 2025-07-26 23:24:14,405 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 19:24:47] 2025-07-26 23:24:14,405 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 19:24:47] 2025-07-26 23:24:14,407 | INFO     | fitting pss+swap vs Time
[2025-07-26 19:24:47] 2025-07-26 23:24:14,407 | INFO     | sum of square deviations: 170944600.5
[2025-07-26 19:24:47] 2025-07-26 23:24:14,407 | INFO     | sum of deviations: -3051388390.5
[2025-07-26 19:24:47] 2025-07-26 23:24:14,407 | INFO     | mean x: 1753569611.5
[2025-07-26 19:24:47] 2025-07-26 23:24:14,407 | INFO     | mean y: 2222295.3292682925
[2025-07-26 19:24:47] 2025-07-26 23:24:14,408 | INFO     | -- intersect: 31303719615.595287
[2025-07-26 19:24:47] 2025-07-26 23:24:14,408 | INFO     | intersect: 31303719615.595287
[2025-07-26 19:24:47] 2025-07-26 23:24:14,408 | INFO     | chi2: 0.06007925468837642
[2025-07-26 19:24:47] 2025-07-26 23:24:14,408 | INFO     | -- intersect: 31303719615.595287
[2025-07-26 19:24:47] 2025-07-26 23:24:14,408 | INFO     | current memory leak: -17.85 B/s (using 82 data points, chi2=0.06)
[2025-07-26 19:24:47] 2025-07-26 23:24:14,408 | INFO     | could have reported an average CPU frequency of 2975 MHz (7 samples)
[2025-07-26 19:24:47] 2025-07-26 23:24:14,409 | INFO     | ..............................
[2025-07-26 19:24:47] 2025-07-26 23:24:14,409 | INFO     | . Timing measurements:
[2025-07-26 19:24:47] 2025-07-26 23:24:14,409 | INFO     | . get job = 0 s
[2025-07-26 19:24:47] 2025-07-26 23:24:14,409 | INFO     | . initial setup = 2 s
[2025-07-26 19:24:47] 2025-07-26 23:24:14,409 | INFO     | . payload setup = 8 s
[2025-07-26 19:24:47] 2025-07-26 23:24:14,409 | INFO     | . stage-in = 0 s
[2025-07-26 19:24:47] 2025-07-26 23:24:14,409 | INFO     | . payload execution = 5412 s
[2025-07-26 19:24:47] 2025-07-26 23:24:14,409 | INFO     | . stage-out = 0 s
[2025-07-26 19:24:47] 2025-07-26 23:24:14,409 | INFO     | . log creation = 0 s
[2025-07-26 19:24:47] 2025-07-26 23:24:14,409 | INFO     | ..............................
[2025-07-26 19:24:47] 2025-07-26 23:24:14,494 | INFO     | 
[2025-07-26 19:24:47] 2025-07-26 23:24:14,495 | INFO     | job summary report
[2025-07-26 19:24:47] 2025-07-26 23:24:14,495 | INFO     | --------------------------------------------------
[2025-07-26 19:24:47] 2025-07-26 23:24:14,495 | INFO     | PanDA job id: 6745228865
[2025-07-26 19:24:47] 2025-07-26 23:24:14,495 | INFO     | task id: 45743349
[2025-07-26 19:24:47] 2025-07-26 23:24:14,495 | INFO     | errors: (none)
[2025-07-26 19:24:47] 2025-07-26 23:24:14,495 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 19:24:47] 2025-07-26 23:24:14,495 | INFO     | pilot state: finished 
[2025-07-26 19:24:47] 2025-07-26 23:24:14,496 | INFO     | transexitcode: 0
[2025-07-26 19:24:47] 2025-07-26 23:24:14,496 | INFO     | exeerrorcode: 0
[2025-07-26 19:24:47] 2025-07-26 23:24:14,496 | INFO     | exeerrordiag: 
[2025-07-26 19:24:47] 2025-07-26 23:24:14,496 | INFO     | exitcode: 0
[2025-07-26 19:24:47] 2025-07-26 23:24:14,496 | INFO     | exitmsg: OK
[2025-07-26 19:24:47] 2025-07-26 23:24:14,496 | INFO     | cpuconsumptiontime: 40342 s
[2025-07-26 19:24:47] 2025-07-26 23:24:14,496 | INFO     | nevents: 400
[2025-07-26 19:24:47] 2025-07-26 23:24:14,496 | INFO     | neventsw: 0
[2025-07-26 19:24:47] 2025-07-26 23:24:14,496 | INFO     | pid: 3847301
[2025-07-26 19:24:47] 2025-07-26 23:24:14,496 | INFO     | pgrp: 3847301
[2025-07-26 19:24:47] 2025-07-26 23:24:14,496 | INFO     | corecount: 8
[2025-07-26 19:24:47] 2025-07-26 23:24:14,496 | INFO     | event service: False
[2025-07-26 19:24:47] 2025-07-26 23:24:14,496 | INFO     | sizes: {0: 2397304, 1: 2397503, 7: 2397765, 11: 2397793, 5424: 2424221, 5425: 2433389, 5427: 2433573, 5433: 2433597}
[2025-07-26 19:24:47] 2025-07-26 23:24:14,497 | INFO     | --------------------------------------------------
[2025-07-26 19:24:47] 2025-07-26 23:24:14,497 | INFO     | 
[2025-07-26 19:24:47] 2025-07-26 23:24:14,497 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-26 19:24:47] 2025-07-26 23:24:14,524 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,524 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,524 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,525 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,525 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,525 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,525 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,525 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,525 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,525 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,525 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,525 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,525 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,525 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,525 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,525 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,525 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,526 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 19:24:47] 2025-07-26 23:24:14,526 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,526 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 19:24:47] 2025-07-26 23:24:14,526 | INFO     | job 6745228865 has completed (purged errors)
[2025-07-26 19:24:47] 2025-07-26 23:24:14,526 | INFO     | overall cleanup function is called
[2025-07-26 19:24:47] 2025-07-26 23:24:15,533 | INFO     | --- collectZombieJob: --- 10, [3847301]
[2025-07-26 19:24:47] 2025-07-26 23:24:15,534 | INFO     | zombie collector waiting for pid 3847301
[2025-07-26 19:24:47] 2025-07-26 23:24:15,534 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 19:24:47] 2025-07-26 23:24:15,534 | INFO     | collected zombie processes
[2025-07-26 19:24:47] 2025-07-26 23:24:15,534 | INFO     | will attempt to kill all subprocesses of pid=3847301
[2025-07-26 19:24:47] 2025-07-26 23:24:15,969 | INFO     | process IDs to be killed: [3847301] (in reverse order)
[2025-07-26 19:24:47] 2025-07-26 23:24:16,127 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 19:24:47] 2025-07-26 23:24:16,128 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 19:24:47] 2025-07-26 23:24:16,145 | INFO     | did not find any defunct processes belonging to 3847301
[2025-07-26 19:24:47] 2025-07-26 23:24:16,164 | INFO     | did not find any defunct processes belonging to 3847301
[2025-07-26 19:24:47] 2025-07-26 23:24:16,164 | INFO     | ready for new job
[2025-07-26 19:24:47] 2025-07-26 23:24:16,164 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 19:24:47] 2025-07-26 23:24:16,166 | INFO     | ***************************************
[2025-07-26 19:24:47] 2025-07-26 23:24:16,166 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 19:24:47] 2025-07-26 23:24:16,166 | INFO     | ***************************************
[2025-07-26 19:24:47] 2025-07-26 23:24:16,166 | INFO     | 
[2025-07-26 19:24:47] 2025-07-26 23:24:16,172 | INFO     | architecture information:
[2025-07-26 19:24:47] 2025-07-26 23:24:16,172 | INFO     | executing command: cat /etc/os-release
[2025-07-26 19:24:47] 2025-07-26 23:24:16,191 | INFO     | cat /etc/os-release:
[2025-07-26 19:24:47] NAME="CentOS Linux"
[2025-07-26 19:24:47] VERSION="7 (Core)"
[2025-07-26 19:24:47] ID="centos"
[2025-07-26 19:24:47] ID_LIKE="rhel fedora"
[2025-07-26 19:24:47] VERSION_ID="7"
[2025-07-26 19:24:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 19:24:47] ANSI_COLOR="0;31"
[2025-07-26 19:24:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 19:24:47] HOME_URL="https://www.centos.org/"
[2025-07-26 19:24:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 19:24:47] 
[2025-07-26 19:24:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 19:24:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 19:24:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 19:24:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 19:24:47] 
[2025-07-26 19:24:47] 2025-07-26 23:24:16,192 | INFO     | ***************************************
[2025-07-26 19:24:47] 2025-07-26 23:24:16,694 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-26 19:24:47] 2025-07-26 23:24:16,715 | INFO     | sufficient remaining disk space (75611766784 B)
[2025-07-26 19:24:47] 2025-07-26 23:24:16,715 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 19:24:47] 2025-07-26 23:24:16,716 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 19:24:47] 2025-07-26 23:24:16,716 | INFO     | update_server=False
[2025-07-26 19:24:47] 2025-07-26 23:24:16,716 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 19:24:47] 2025-07-26 23:24:16,716 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 19:24:47] 2025-07-26 23:24:16,716 | INFO     | aborting loop
[2025-07-26 19:24:47] 2025-07-26 23:24:16,860 | INFO     | all payload control threads have been joined
[2025-07-26 19:24:47] 2025-07-26 23:24:16,868 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 19:24:47] 2025-07-26 23:24:17,194 | INFO     | all data control threads have been joined
[2025-07-26 19:24:47] 2025-07-26 23:24:17,721 | INFO     | [job] retrieve thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:17,722 | INFO     | [job] job monitor thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:17,791 | INFO     | [payload] validate_post thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:17,866 | INFO     | [payload] control thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:18,200 | INFO     | [data] control thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:18,224 | INFO     | [payload] failed_post thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:18,268 | INFO     | all job control threads have been joined
[2025-07-26 19:24:47] 2025-07-26 23:24:18,506 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:18,554 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 19:24:47] 2025-07-26 23:24:18,580 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:18,671 | INFO     | [job] validate thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:18,807 | INFO     | [data] copytool_in thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:18,874 | INFO     | [data] copytool_out thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:18,935 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:19,274 | INFO     | [job] control thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:19,504 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 19:24:47] 2025-07-26 23:24:20,509 | INFO     | [job] queue monitor thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:22,562 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:27,586 | INFO     | job.realtimelogging is not enabled
[2025-07-26 19:24:47] 2025-07-26 23:24:28,592 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 19:24:47] 2025-07-26 23:24:29,520 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140438112208704)>', '<ExcThread(monitor, started 140437620770560)>']
[2025-07-26 19:24:47] 2025-07-26 23:24:34,546 | INFO     | all workflow threads have been joined
[2025-07-26 19:24:47] 2025-07-26 23:24:34,546 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 19:24:47] 2025-07-26 23:24:34,546 | INFO     | traces error code: 0
[2025-07-26 19:24:47] 2025-07-26 23:24:34,546 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 19:24:47] 2025-07-26 23:24:47,423 | INFO     | PID=3840201 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 19:24:47] 2025-07-26 23:24:47,424 | INFO     | .. there are 17 such processes running
[2025-07-26 19:24:47] 2025-07-26 23:24:47,424 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 19:24:47] 2025-07-26 23:24:47,424 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 19:24:47] 2025-07-26 23:24:47,424 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 19:24:47] 2025-07-26 23:24:47,424 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 19:24:47] 2025-07-26 23:24:47,424 | INFO     | [monitor] control thread has ended
[2025-07-26 19:24:47] 2025-07-26 23:24:47,563 [wrapper] ==== pilot stdout END ====
[2025-07-26 19:24:47] 2025-07-26 23:24:47,566 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 19:24:47] 2025-07-26 23:24:47,570 [wrapper] pilotpid: 3840201
[2025-07-26 19:24:47] 2025-07-26 23:24:47,572 [wrapper] Pilot exit status: 0
[2025-07-26 19:24:47] 2025-07-26 23:24:47,589 [wrapper] pandaids: 6745228865
[2025-07-26 19:24:47] 2025-07-26 23:24:47,708 [wrapper] cleanup supervisor_pilot   46817 3840202
[2025-07-26 19:24:47] 2025-07-26 23:24:47,712 [wrapper] Test setup, not cleaning
[2025-07-26 19:24:47] 2025-07-26 23:24:47,719 [wrapper] apfmon messages muted
[2025-07-26 19:24:47] 2025-07-26 23:24:47,723 [wrapper] ==== wrapper stdout END ====
[2025-07-26 19:24:47] 2025-07-26 23:24:47,726 [wrapper] ==== wrapper stderr END ====
[2025-07-26 19:24:47]  *** Error codes and diagnostics ***
[2025-07-26 19:24:47]     "exeErrorCode": 0,
[2025-07-26 19:24:47]     "exeErrorDiag": "",
[2025-07-26 19:24:47]     "pilotErrorCode": 0,
[2025-07-26 19:24:47]     "pilotErrorDiag": "",
[2025-07-26 19:24:47]  *** Listing of results directory ***
[2025-07-26 19:24:47] total 361080
[2025-07-26 19:24:47] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 09:41 pilot3.tar.gz
[2025-07-26 19:24:47] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 09:57 queuedata.json
[2025-07-26 19:24:47] -rwx------. 1 boincer umatlas     36292 Jul 26 09:58 runpilot2-wrapper.sh
[2025-07-26 19:24:47] -rw-r--r--. 1 boincer umatlas       100 Jul 26 17:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 19:24:47] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 17:53 run_atlas
[2025-07-26 19:24:47] -rw-r--r--. 1 boincer umatlas       105 Jul 26 17:53 job.xml
[2025-07-26 19:24:47] -rw-r--r--. 2 boincer umatlas 146301859 Jul 26 17:53 EVNT.45743347._002222.pool.root.1
[2025-07-26 19:24:47] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 17:53 shared
[2025-07-26 19:24:47] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 17:53 input.tar.gz
[2025-07-26 19:24:47] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 17:53 start_atlas.sh
[2025-07-26 19:24:47] -rw-r--r--. 1 boincer umatlas         0 Jul 26 17:53 boinc_lockfile
[2025-07-26 19:24:47] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 17:53 pandaJob.out
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas    980125 Jul 26 17:53 agis_schedconf.cvmfs.json
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas   1593052 Jul 26 17:53 agis_ddmendpoints.agis.ALL.json
[2025-07-26 19:24:47] drwx------. 4 boincer umatlas      4096 Jul 26 17:53 pilot3
[2025-07-26 19:24:47] -rw-r--r--. 1 boincer umatlas      6933 Jul 26 19:18 init_data.xml
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas 217901135 Jul 26 19:23 HITS.45743349._038951.pool.root.1
[2025-07-26 19:24:47] -rw-r--r--. 1 boincer umatlas       529 Jul 26 19:23 boinc_task_state.xml
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas      1030 Jul 26 19:24 memory_monitor_summary.json
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas    307029 Jul 26 19:24 log.45743349._038951.job.log.tgz.1
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas        95 Jul 26 19:24 pilot_heartbeat.json
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas      7769 Jul 26 19:24 heartbeat.json
[2025-07-26 19:24:47] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 19:24 boinc_mmap_file
[2025-07-26 19:24:47] -rw-r--r--. 1 boincer umatlas        27 Jul 26 19:24 wrapper_checkpoint.txt
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas       823 Jul 26 19:24 pilotlog.txt
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas    528262 Jul 26 19:24 log.45743349._038951.job.log.1
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas       357 Jul 26 19:24 output.list
[2025-07-26 19:24:47] -rw-r--r--. 1 boincer umatlas       620 Jul 26 19:24 runtime_log
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas    849920 Jul 26 19:24 result.tar.gz
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas       651 Jul 26 19:24 xlzLDmoauz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbISLDmsi1NWn.diag
[2025-07-26 19:24:47] -rw-r--r--. 1 boincer umatlas      8655 Jul 26 19:24 runtime_log.err
[2025-07-26 19:24:47] -rw-r--r--. 1 boincer umatlas     21728 Jul 26 19:24 stderr.txt
[2025-07-26 19:24:47] HITS file was successfully produced:
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas 217901135 Jul 26 19:23 shared/HITS.pool.root.1
[2025-07-26 19:24:47]  *** Contents of shared directory: ***
[2025-07-26 19:24:47] total 357060
[2025-07-26 19:24:47] -rw-r--r--. 2 boincer umatlas 146301859 Jul 26 17:53 ATLAS.root_0
[2025-07-26 19:24:47] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 17:53 input.tar.gz
[2025-07-26 19:24:47] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 17:53 start_atlas.sh
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas 217901135 Jul 26 19:23 HITS.pool.root.1
[2025-07-26 19:24:47] -rw-------. 1 boincer umatlas    849920 Jul 26 19:24 result.tar.gz
19:24:48 (3836627): run_atlas exited; CPU time 40505.032909
19:24:48 (3836627): called boinc_finish(0)

</stderr_txt>
]]>

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