Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
21:05:03 (2475948): wrapper (7.7.26015): starting
21:05:03 (2475948): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 21:05:03] Arguments: --nthreads 12
[2025-07-28 21:05:03] Threads: 12
[2025-07-28 21:05:03] Checking for CVMFS
[2025-07-28 21:05:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 21:05:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 21:05:06] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 21:05:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 21:05:08] 2.13.1.0 48702 9307 61936 148863 1 57 3164529 4096000 912 130560 0 5996567 99.903 710411 615 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-07-28 21:05:08] CVMFS is ok
[2025-07-28 21:05:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 21:05:08] Checking for apptainer binary...
[2025-07-28 21:05:08] apptainer is not installed, using version from CVMFS
[2025-07-28 21:05:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 21:05:09] g6400
[2025-07-28 21:05:09] apptainer works
[2025-07-28 21:05:09] Set ATHENA_PROC_NUMBER=12
[2025-07-28 21:05:09] Set ATHENA_CORE_NUMBER=12
[2025-07-28 21:05:09] Starting ATLAS job with PandaID=6745262146
[2025-07-28 21:05:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-29 03:08:08]  *** The last 200 lines of the pilot log: ***
[2025-07-29 03:08:08] 2025-07-29 03:07:35,379 | INFO     | chi2: 2.523491442902068
[2025-07-29 03:08:08] 2025-07-29 03:07:35,380 | INFO     | sum of square deviations: 12843730969.135733
[2025-07-29 03:08:08] 2025-07-29 03:07:35,386 | INFO     | sum of deviations: 131562504829.13869
[2025-07-29 03:08:08] 2025-07-29 03:07:35,386 | INFO     | mean x: 1753747519.3034682
[2025-07-29 03:08:08] 2025-07-29 03:07:35,386 | INFO     | mean y: 2648368.8843930634
[2025-07-29 03:08:08] 2025-07-29 03:07:35,386 | INFO     | -- intersect: -17961556660.939465
[2025-07-29 03:08:08] 2025-07-29 03:07:35,386 | INFO     | intersect: -17961556660.939465
[2025-07-29 03:08:08] 2025-07-29 03:07:35,386 | INFO     | chi2: 1.810935428963475
[2025-07-29 03:08:08] 2025-07-29 03:07:35,386 | INFO     | current chi2=1.810935428963475 (change=28.23691025158138 %)
[2025-07-29 03:08:08] 2025-07-29 03:07:35,387 | INFO     | sum of square deviations: 12294932603.225815
[2025-07-29 03:08:08] 2025-07-29 03:07:35,388 | INFO     | sum of deviations: 129033487399.80647
[2025-07-29 03:08:08] 2025-07-29 03:07:35,388 | INFO     | mean x: 1753747366.8064516
[2025-07-29 03:08:08] 2025-07-29 03:07:35,388 | INFO     | mean y: 2647666.0879765395
[2025-07-29 03:08:08] 2025-07-29 03:07:35,393 | INFO     | -- intersect: -18402669878.95427
[2025-07-29 03:08:08] 2025-07-29 03:07:35,393 | INFO     | intersect: -18402669878.95427
[2025-07-29 03:08:08] 2025-07-29 03:07:35,393 | INFO     | chi2: 1.810493010307173
[2025-07-29 03:08:08] 2025-07-29 03:07:35,393 | INFO     | current chi2=1.810493010307173 (change=0.024430393774731596 %)
[2025-07-29 03:08:08] 2025-07-29 03:07:35,393 | INFO     | right removable region: 340
[2025-07-29 03:08:08] 2025-07-29 03:07:35,393 | INFO     | sum of square deviations: 12843561389.13573
[2025-07-29 03:08:08] 2025-07-29 03:07:35,395 | INFO     | sum of deviations: 37779996229.34107
[2025-07-29 03:08:08] 2025-07-29 03:07:35,395 | INFO     | mean x: 1753747824.3034682
[2025-07-29 03:08:08] 2025-07-29 03:07:35,395 | INFO     | mean y: 2661889.549132948
[2025-07-29 03:08:08] 2025-07-29 03:07:35,395 | INFO     | -- intersect: -5156077511.614634
[2025-07-29 03:08:08] 2025-07-29 03:07:35,396 | INFO     | intersect: -5156077511.614634
[2025-07-29 03:08:08] 2025-07-29 03:07:35,396 | INFO     | chi2: 0.7814135454570623
[2025-07-29 03:08:08] 2025-07-29 03:07:35,396 | INFO     | current chi2=0.7814135454570623 (change=69.03442856305388 %)
[2025-07-29 03:08:08] 2025-07-29 03:07:35,396 | INFO     | sum of square deviations: 12294657003.360664
[2025-07-29 03:08:08] 2025-07-29 03:07:35,402 | INFO     | sum of deviations: 30136399312.082123
[2025-07-29 03:08:08] 2025-07-29 03:07:35,402 | INFO     | mean x: 1753747976.8152492
[2025-07-29 03:08:08] 2025-07-29 03:07:35,402 | INFO     | mean y: 2664006.4457478006
[2025-07-29 03:08:08] 2025-07-29 03:07:35,402 | INFO     | -- intersect: -4296085385.880841
[2025-07-29 03:08:08] 2025-07-29 03:07:35,402 | INFO     | intersect: -4296085385.880841
[2025-07-29 03:08:08] 2025-07-29 03:07:35,403 | INFO     | chi2: 0.768418779825707
[2025-07-29 03:08:08] 2025-07-29 03:07:35,403 | INFO     | current chi2=0.768418779825707 (change=1.6629818752059642 %)
[2025-07-29 03:08:08] 2025-07-29 03:07:35,403 | INFO     | left removable region: 20
[2025-07-29 03:08:08] 2025-07-29 03:07:35,403 | INFO     | sum of square deviations: 10160735107.496855
[2025-07-29 03:08:08] 2025-07-29 03:07:35,409 | INFO     | sum of deviations: 37057378014.61562
[2025-07-29 03:08:08] 2025-07-29 03:07:35,409 | INFO     | mean x: 1753747946.246875
[2025-07-29 03:08:08] 2025-07-29 03:07:35,409 | INFO     | mean y: 2674142.865625
[2025-07-29 03:08:08] 2025-07-29 03:07:35,409 | INFO     | -- intersect: -6393447781.273058
[2025-07-29 03:08:08] 2025-07-29 03:07:35,409 | INFO     | intersect: -6393447781.273058
[2025-07-29 03:08:08] 2025-07-29 03:07:35,409 | INFO     | chi2: 0.007551659955598107
[2025-07-29 03:08:08] 2025-07-29 03:07:35,409 | INFO     | -- intersect: -6393447781.273058
[2025-07-29 03:08:08] 2025-07-29 03:07:35,409 | INFO     | current memory leak: 3.65 B/s (using 320 data points, chi2=0.01)
[2025-07-29 03:08:08] 2025-07-29 03:07:35,410 | INFO     | could have reported an average CPU frequency of 3999 MHz (15 samples)
[2025-07-29 03:08:08] 2025-07-29 03:07:35,410 | INFO     | ..............................
[2025-07-29 03:08:08] 2025-07-29 03:07:35,410 | INFO     | . Timing measurements:
[2025-07-29 03:08:08] 2025-07-29 03:07:35,410 | INFO     | . get job = 0 s
[2025-07-29 03:08:08] 2025-07-29 03:07:35,410 | INFO     | . initial setup = 6 s
[2025-07-29 03:08:08] 2025-07-29 03:07:35,410 | INFO     | . payload setup = 62 s
[2025-07-29 03:08:08] 2025-07-29 03:07:35,410 | INFO     | . stage-in = 0 s
[2025-07-29 03:08:08] 2025-07-29 03:07:35,410 | INFO     | . payload execution = 21444 s
[2025-07-29 03:08:08] 2025-07-29 03:07:35,410 | INFO     | . stage-out = 2 s
[2025-07-29 03:08:08] 2025-07-29 03:07:35,410 | INFO     | . log creation = 0 s
[2025-07-29 03:08:08] 2025-07-29 03:07:35,410 | INFO     | ..............................
[2025-07-29 03:08:08] 2025-07-29 03:07:35,489 | INFO     | sufficient remaining disk space (200355610624 B)
[2025-07-29 03:08:08] 2025-07-29 03:07:35,489 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-29 03:08:08] 2025-07-29 03:07:35,490 | INFO     | size of work directory /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745262146: 4632897 B (within 2537553920 B limit)
[2025-07-29 03:08:08] 2025-07-29 03:07:35,490 | INFO     | pfn file=/opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745262146/HITS.45743349._040652.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-29 03:08:08] 2025-07-29 03:07:35,490 | INFO     | total size of present files: 0 B (workdir size: 4632897 B)
[2025-07-29 03:08:08] 2025-07-29 03:07:35,490 | INFO     | output file size check: skipping output file /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6745262146/HITS.45743349._040652.pool.root.1 since it does n
[2025-07-29 03:08:08] 2025-07-29 03:07:35,725 | INFO     | 
[2025-07-29 03:08:08] 2025-07-29 03:07:35,725 | INFO     | job summary report
[2025-07-29 03:08:08] 2025-07-29 03:07:35,725 | INFO     | --------------------------------------------------
[2025-07-29 03:08:08] 2025-07-29 03:07:35,725 | INFO     | PanDA job id: 6745262146
[2025-07-29 03:08:08] 2025-07-29 03:07:35,725 | INFO     | task id: 45743349
[2025-07-29 03:08:08] 2025-07-29 03:07:35,725 | INFO     | errors: (none)
[2025-07-29 03:08:08] 2025-07-29 03:07:35,725 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-29 03:08:08] 2025-07-29 03:07:35,725 | INFO     | pilot state: finished 
[2025-07-29 03:08:08] 2025-07-29 03:07:35,725 | INFO     | transexitcode: 0
[2025-07-29 03:08:08] 2025-07-29 03:07:35,725 | INFO     | exeerrorcode: 0
[2025-07-29 03:08:08] 2025-07-29 03:07:35,725 | INFO     | exeerrordiag: 
[2025-07-29 03:08:08] 2025-07-29 03:07:35,725 | INFO     | exitcode: 0
[2025-07-29 03:08:08] 2025-07-29 03:07:35,725 | INFO     | exitmsg: OK
[2025-07-29 03:08:08] 2025-07-29 03:07:35,726 | INFO     | cpuconsumptiontime: 32956 s
[2025-07-29 03:08:08] 2025-07-29 03:07:35,726 | INFO     | nevents: 400
[2025-07-29 03:08:08] 2025-07-29 03:07:35,726 | INFO     | neventsw: 0
[2025-07-29 03:08:08] 2025-07-29 03:07:35,726 | INFO     | pid: 2486043
[2025-07-29 03:08:08] 2025-07-29 03:07:35,726 | INFO     | pgrp: 2486043
[2025-07-29 03:08:08] 2025-07-29 03:07:35,726 | INFO     | corecount: 12
[2025-07-29 03:08:08] 2025-07-29 03:07:35,726 | INFO     | event service: False
[2025-07-29 03:08:08] 2025-07-29 03:07:35,726 | INFO     | sizes: {0: 2391932, 1: 2391932, 11: 2391960, 22: 2391988, 33: 2392016, 44: 2392072, 49: 2392490, 54: 2392518, 21510: 2426305, 21511: 2426304, 21513: 2435740, 21561
[2025-07-29 03:08:08] 2025-07-29 03:07:35,726 | INFO     | --------------------------------------------------
[2025-07-29 03:08:08] 2025-07-29 03:07:35,726 | INFO     | 
[2025-07-29 03:08:08] 2025-07-29 03:07:35,726 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-07-29 03:08:08] 2025-07-29 03:07:35,769 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,769 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,769 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,769 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,769 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,769 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-29 03:08:08] 2025-07-29 03:07:35,770 | INFO     | job 6745262146 has completed (purged errors)
[2025-07-29 03:08:08] 2025-07-29 03:07:35,771 | INFO     | overall cleanup function is called
[2025-07-29 03:08:08] 2025-07-29 03:07:35,844 | INFO     | number of running child processes to parent process 2486043: 1
[2025-07-29 03:08:08] 2025-07-29 03:07:35,844 | INFO     | maximum number of monitored processes: 6
[2025-07-29 03:08:08] 2025-07-29 03:07:35,865 | INFO     | aborting job monitoring since job object (job id=6745262146) has expired
[2025-07-29 03:08:08] 2025-07-29 03:07:36,777 | INFO     | --- collectZombieJob: --- 10, [2486043]
[2025-07-29 03:08:08] 2025-07-29 03:07:36,781 | INFO     | zombie collector waiting for pid 2486043
[2025-07-29 03:08:08] 2025-07-29 03:07:36,781 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-29 03:08:08] 2025-07-29 03:07:36,781 | INFO     | collected zombie processes
[2025-07-29 03:08:08] 2025-07-29 03:07:36,781 | INFO     | will attempt to kill all subprocesses of pid=2486043
[2025-07-29 03:08:08] 2025-07-29 03:07:36,915 | INFO     | process IDs to be killed: [2486043] (in reverse order)
[2025-07-29 03:08:08] 2025-07-29 03:07:37,373 | WARNING  | found no corresponding commands to process id(s)
[2025-07-29 03:08:08] 2025-07-29 03:07:37,373 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-29 03:08:08] 2025-07-29 03:07:37,374 | INFO     | did not find any defunct processes belonging to 2486043
[2025-07-29 03:08:08] 2025-07-29 03:07:37,375 | INFO     | did not find any defunct processes belonging to 2486043
[2025-07-29 03:08:08] 2025-07-29 03:07:37,376 | INFO     | ready for new job
[2025-07-29 03:08:08] 2025-07-29 03:07:37,376 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-29 03:08:08] 2025-07-29 03:07:37,393 | INFO     | ***************************************
[2025-07-29 03:08:08] 2025-07-29 03:07:37,393 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-29 03:08:08] 2025-07-29 03:07:37,393 | INFO     | ***************************************
[2025-07-29 03:08:08] 2025-07-29 03:07:37,393 | INFO     | 
[2025-07-29 03:08:08] 2025-07-29 03:07:37,417 | INFO     | architecture information:
[2025-07-29 03:08:08] 2025-07-29 03:07:37,417 | INFO     | executing command: cat /etc/os-release
[2025-07-29 03:08:08] 2025-07-29 03:07:37,445 | INFO     | cat /etc/os-release:
[2025-07-29 03:08:08] NAME="CentOS Linux"
[2025-07-29 03:08:08] VERSION="7 (Core)"
[2025-07-29 03:08:08] ID="centos"
[2025-07-29 03:08:08] ID_LIKE="rhel fedora"
[2025-07-29 03:08:08] VERSION_ID="7"
[2025-07-29 03:08:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-29 03:08:08] ANSI_COLOR="0;31"
[2025-07-29 03:08:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-29 03:08:08] HOME_URL="https://www.centos.org/"
[2025-07-29 03:08:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-29 03:08:08] 
[2025-07-29 03:08:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-29 03:08:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-29 03:08:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-29 03:08:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-29 03:08:08] 
[2025-07-29 03:08:08] 2025-07-29 03:07:37,445 | INFO     | ***************************************
[2025-07-29 03:08:08] 2025-07-29 03:07:37,949 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-07-29 03:08:08] 2025-07-29 03:07:38,001 | INFO     | sufficient remaining disk space (200360853504 B)
[2025-07-29 03:08:08] 2025-07-29 03:07:38,001 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-29 03:08:08] 2025-07-29 03:07:38,001 | INFO     | current server update state: UPDATING_FINAL
[2025-07-29 03:08:08] 2025-07-29 03:07:38,001 | INFO     | update_server=False
[2025-07-29 03:08:08] 2025-07-29 03:07:38,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-29 03:08:08] 2025-07-29 03:07:38,325 | INFO     | all data control threads have been joined
[2025-07-29 03:08:08] 2025-07-29 03:07:38,373 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-29 03:08:08] 2025-07-29 03:07:38,373 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-29 03:08:08] 2025-07-29 03:07:38,373 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-29 03:08:08] 2025-07-29 03:07:38,373 | INFO     | will abort loop
[2025-07-29 03:08:08] 2025-07-29 03:07:38,382 | INFO     | all payload control threads have been joined
[2025-07-29 03:08:08] 2025-07-29 03:07:38,621 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-29 03:08:08] 2025-07-29 03:07:38,797 | INFO     | all job control threads have been joined
[2025-07-29 03:08:08] 2025-07-29 03:07:39,005 | INFO     | [job] retrieve thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:39,125 | INFO     | [payload] validate_pre thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:39,217 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-29 03:08:08] 2025-07-29 03:07:39,285 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:39,329 | INFO     | [data] control thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:39,377 | INFO     | [job] job monitor thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:39,385 | INFO     | [payload] control thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:39,565 | INFO     | [payload] validate_post thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:39,804 | INFO     | [job] control thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:40,021 | INFO     | [data] copytool_in thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:40,137 | INFO     | [payload] failed_post thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:40,289 | INFO     | [job] create_data_payload thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:40,293 | INFO     | [job] validate thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:40,357 | INFO     | [payload] execute_payloads thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:40,629 | INFO     | [data] copytool_out thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:40,749 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-29 03:08:08] 2025-07-29 03:07:41,753 | INFO     | [job] queue monitor thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:43,237 | INFO     | [data] queue_monitor thread has finished
[2025-07-29 03:08:08] 2025-07-29 03:07:43,725 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139827611481920)>', '<ExcThread(monitor, started 139826938500864)>']
[2025-07-29 03:08:08] 2025-07-29 03:07:48,749 | INFO     | all workflow threads have been joined
[2025-07-29 03:08:08] 2025-07-29 03:07:48,749 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-29 03:08:08] 2025-07-29 03:07:48,749 | INFO     | traces error code: 0
[2025-07-29 03:08:08] 2025-07-29 03:07:48,749 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-29 03:08:08] 2025-07-29 03:08:07,705 | INFO     | PID=2479616 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-29 03:08:08] 2025-07-29 03:08:07,706 | INFO     | .. there are 2 such processes running
[2025-07-29 03:08:08] 2025-07-29 03:08:07,706 | INFO     | found 0 job(s) in 20 queues
[2025-07-29 03:08:08] 2025-07-29 03:08:07,706 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-29 03:08:08] 2025-07-29 03:08:07,706 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-29 03:08:08] 2025-07-29 03:08:07,706 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-29 03:08:08] 2025-07-29 03:08:07,706 | INFO     | [monitor] control thread has ended
[2025-07-29 03:08:08] 2025-07-29 03:08:07,814 [wrapper] ==== pilot stdout END ====
[2025-07-29 03:08:08] 2025-07-29 03:08:07,826 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-29 03:08:08] 2025-07-29 03:08:07,853 [wrapper] pilotpid: 2479616
[2025-07-29 03:08:08] 2025-07-29 03:08:07,861 [wrapper] Pilot exit status: 0
[2025-07-29 03:08:08] 2025-07-29 03:08:07,989 [wrapper] pandaids: 6745262146
[2025-07-29 03:08:08] 2025-07-29 03:08:08,085 [wrapper] cleanup supervisor_pilot 2571914 2479617
[2025-07-29 03:08:08] 2025-07-29 03:08:08,113 [wrapper] Test setup, not cleaning
[2025-07-29 03:08:08] 2025-07-29 03:08:08,149 [wrapper] apfmon messages muted
[2025-07-29 03:08:08] 2025-07-29 03:08:08,193 [wrapper] ==== wrapper stdout END ====
[2025-07-29 03:08:08] 2025-07-29 03:08:08,233 [wrapper] ==== wrapper stderr END ====
[2025-07-29 03:08:08]  *** Error codes and diagnostics ***
[2025-07-29 03:08:08]     "exeErrorCode": 0,
[2025-07-29 03:08:08]     "exeErrorDiag": "",
[2025-07-29 03:08:08]     "pilotErrorCode": 0,
[2025-07-29 03:08:08]     "pilotErrorDiag": "",
[2025-07-29 03:08:08]  *** Listing of results directory ***
[2025-07-29 03:08:08] total 346056
[2025-07-29 03:08:08] -rw-r--r-- 1 boinc boinc    530466 Jul 26 15:50 pilot3.tar.gz
[2025-07-29 03:08:08] -rw-r--r-- 1 boinc boinc      5112 Jul 26 16:15 queuedata.json
[2025-07-29 03:08:08] -rwx------ 1 boinc boinc     36292 Jul 26 16:15 runpilot2-wrapper.sh
[2025-07-29 03:08:08] -rw-rw-r-- 1 boinc boinc       100 Jul 28 21:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-29 03:08:08] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 21:05 run_atlas
[2025-07-29 03:08:08] -rw-rw-r-- 1 boinc boinc       105 Jul 28 21:05 job.xml
[2025-07-29 03:08:08] -rw-r--r-- 2 boinc boinc     15095 Jul 28 21:05 start_atlas.sh
[2025-07-29 03:08:08] drwxrwx--x 2 boinc boinc      4096 Jul 28 21:05 shared
[2025-07-29 03:08:08] -rw-r--r-- 2 boinc boinc    542896 Jul 28 21:05 input.tar.gz
[2025-07-29 03:08:08] -rw-rw-r-- 1 boinc boinc      9441 Jul 28 21:05 init_data.xml
[2025-07-29 03:08:08] -rw-rw-r-- 1 boinc boinc         0 Jul 28 21:05 boinc_lockfile
[2025-07-29 03:08:08] -rw-r--r-- 2 boinc boinc 142146650 Jul 28 21:05 EVNT.45743347._002322.pool.root.1
[2025-07-29 03:08:08] -rw-rw-r-- 1 boinc boinc      2563 Jul 28 21:05 pandaJob.out
[2025-07-29 03:08:08] -rw------- 1 boinc boinc    977348 Jul 28 21:06 agis_schedconf.cvmfs.json
[2025-07-29 03:08:08] drwx------ 4 boinc boinc      4096 Jul 28 21:06 pilot3
[2025-07-29 03:08:08] -rw------- 1 boinc boinc 203250045 Jul 29 03:05 HITS.45743349._040652.pool.root.1
[2025-07-29 03:08:08] -rw-rw-r-- 1 boinc boinc       530 Jul 29 03:05 boinc_task_state.xml
[2025-07-29 03:08:08] -rw------- 1 boinc boinc      1022 Jul 29 03:06 memory_monitor_summary.json
[2025-07-29 03:08:08] -rw------- 1 boinc boinc   1589827 Jul 29 03:06 agis_ddmendpoints.agis.ALL.json
[2025-07-29 03:08:08] -rw------- 1 boinc boinc    517093 Jul 29 03:06 log.45743349._040652.job.log.tgz.1
[2025-07-29 03:08:08] -rw------- 1 boinc boinc        96 Jul 29 03:07 pilot_heartbeat.json
[2025-07-29 03:08:08] -rw------- 1 boinc boinc      7769 Jul 29 03:07 heartbeat.json
[2025-07-29 03:08:08] -rw------- 1 boinc boinc       822 Jul 29 03:08 pilotlog.txt
[2025-07-29 03:08:08] -rw------- 1 boinc boinc   2028960 Jul 29 03:08 log.45743349._040652.job.log.1
[2025-07-29 03:08:08] -rw-rw-r-- 1 boinc boinc        28 Jul 29 03:08 wrapper_checkpoint.txt
[2025-07-29 03:08:08] -rw------- 1 boinc boinc       357 Jul 29 03:08 output.list
[2025-07-29 03:08:08] -rw-rw-r-- 1 boinc boinc       620 Jul 29 03:08 runtime_log
[2025-07-29 03:08:08] -rw------- 1 boinc boinc   2560000 Jul 29 03:08 result.tar.gz
[2025-07-29 03:08:08] -rw-rw-r-- 1 boinc boinc      8958 Jul 29 03:08 runtime_log.err
[2025-07-29 03:08:08] -rw------- 1 boinc boinc       652 Jul 29 03:08 6vSKDm2jwz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYXSLDmbpWrJn.diag
[2025-07-29 03:08:08] -rw-rw-r-- 1 boinc boinc      8192 Jul 29 03:08 boinc_mmap_file
[2025-07-29 03:08:08] -rw-rw-r-- 1 boinc boinc     21350 Jul 29 03:08 stderr.txt
[2025-07-29 03:08:09] HITS file was successfully produced:
[2025-07-29 03:08:09] -rw------- 1 boinc boinc 203250045 Jul 29 03:05 shared/HITS.pool.root.1
[2025-07-29 03:08:09]  *** Contents of shared directory: ***
[2025-07-29 03:08:09] total 340360
[2025-07-29 03:08:09] -rw-r--r-- 2 boinc boinc     15095 Jul 28 21:05 start_atlas.sh
[2025-07-29 03:08:09] -rw-r--r-- 2 boinc boinc    542896 Jul 28 21:05 input.tar.gz
[2025-07-29 03:08:09] -rw-r--r-- 2 boinc boinc 142146650 Jul 28 21:05 ATLAS.root_0
[2025-07-29 03:08:09] -rw------- 1 boinc boinc 203250045 Jul 29 03:05 HITS.pool.root.1
[2025-07-29 03:08:09] -rw------- 1 boinc boinc   2560000 Jul 29 03:08 result.tar.gz
03:08:10 (2475948): run_atlas exited; CPU time 33021.729524
03:08:10 (2475948): called boinc_finish(0)

</stderr_txt>
]]>

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