Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
16:56:40 (1680765): wrapper (7.7.26015): starting
16:56:40 (1680765): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 16:56:40] Arguments: --nthreads 12
[2025-07-27 16:56:40] Threads: 12
[2025-07-27 16:56:40] Checking for CVMFS
[2025-07-27 16:56:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 16:56:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 16:56:40] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 16:56:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 16:56:40] 2.13.1.0 50093 7900 73948 148818 3 57 3445877 4096000 1002 130560 0 15767031 99.996 288876 285 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-07-27 16:56:40] CVMFS is ok
[2025-07-27 16:56:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 16:56:40] Checking for apptainer binary...
[2025-07-27 16:56:40] apptainer is not installed, using version from CVMFS
[2025-07-27 16:56:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 16:56:41] ryzen7
[2025-07-27 16:56:41] apptainer works
[2025-07-27 16:56:41] Set ATHENA_PROC_NUMBER=12
[2025-07-27 16:56:41] Set ATHENA_CORE_NUMBER=12
[2025-07-27 16:56:41] Starting ATLAS job with PandaID=6745230290
[2025-07-27 16:56:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 18:28:26]  *** The last 200 lines of the pilot log: ***
[2025-07-27 18:28:26]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 18:28:26]  replicas=None
[2025-07-27 18:28:26]  scope=mc23_13p6TeV
[2025-07-27 18:28:26]  status=None
[2025-07-27 18:28:26]  status_code=0
[2025-07-27 18:28:26]  storage_token=
[2025-07-27 18:28:26]  surl=/opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745230290/log.45743349._040187.job.log.tgz.1
[2025-07-27 18:28:26]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/55/26/log.45743349._040187.job.log.tgz.1
[2025-07-27 18:28:26]  workdir=None
[2025-07-27 18:28:26] ]
[2025-07-27 18:28:26] 2025-07-27 18:27:46,929 | INFO     | transferring file log.45743349._040187.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745230290/log.45743349._040187.job.log.tgz.1 t
[2025-07-27 18:28:26] 2025-07-27 18:27:46,929 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745230290/log.45743349._040187.job.log.tgz.1 /opt/boinc/instance_home
[2025-07-27 18:28:26] 2025-07-27 18:27:46,939 | INFO     | adding to output.list: log.45743349._040187.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/55/26/log.45743349._040187.job.log.tg
[2025-07-27 18:28:26] 2025-07-27 18:27:46,939 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 18:28:26] 2025-07-27 18:27:46,939 | INFO     | summary of transferred files:
[2025-07-27 18:28:26] 2025-07-27 18:27:46,939 | INFO     |  -- lfn=log.45743349._040187.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 18:28:26] 2025-07-27 18:27:46,940 | INFO     | stage-out finished correctly
[2025-07-27 18:28:26] 2025-07-27 18:27:46,998 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 18:28:26] 2025-07-27 18:27:47,827 | WARNING  | process 1691214 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 18:28:26] 2025-07-27 18:27:47,827 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745230290/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:28:26] 2025-07-27 18:27:47,889 | INFO     | number of running child processes to parent process 1691214: 1
[2025-07-27 18:28:26] 2025-07-27 18:27:47,889 | INFO     | maximum number of monitored processes: 6
[2025-07-27 18:28:26] 2025-07-27 18:27:49,587 | INFO     | job 6745230290 has state=finished
[2025-07-27 18:28:26] 2025-07-27 18:27:49,587 | INFO     | preparing for final server update for job 6745230290 in state='finished'
[2025-07-27 18:28:26] 2025-07-27 18:27:49,587 | INFO     | this job has now completed (state=finished)
[2025-07-27 18:28:26] 2025-07-27 18:27:49,587 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 18:28:26] 2025-07-27 18:27:49,587 | INFO     | log transfer has been attempted: DONE
[2025-07-27 18:28:26] 2025-07-27 18:27:49,587 | INFO     | job 6745230290 has finished - writing final server update
[2025-07-27 18:28:26] 2025-07-27 18:27:49,588 | INFO     | total number of processed events: 400 (read)
[2025-07-27 18:28:26] 2025-07-27 18:27:49,588 | INFO     | executing command: lscpu
[2025-07-27 18:28:26] 2025-07-27 18:27:49,622 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 18:28:26] 2025-07-27 18:27:50,099 | INFO     | PID=1684509 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:28:26] 2025-07-27 18:27:50,099 | INFO     | .. there are 3 such processes running
[2025-07-27 18:28:26] 2025-07-27 18:27:50,390 | INFO     | monitor loop #403: job 0:6745230290 is in state 'finished'
[2025-07-27 18:28:26] 2025-07-27 18:27:50,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:28:26] 2025-07-27 18:27:52,894 | INFO     | monitor loop #404: job 0:6745230290 is in state 'finished'
[2025-07-27 18:28:26] 2025-07-27 18:27:52,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 18:28:26] 2025-07-27 18:27:53,702 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 18:28:26] 2025-07-27 18:27:53,703 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4141.459500000001
[2025-07-27 18:28:26] 2025-07-27 18:27:53,705 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745230290/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 18:28:26] 2025-07-27 18:27:53,706 | INFO     | extracted standard info from prmon json
[2025-07-27 18:28:26] 2025-07-27 18:27:53,706 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 18:28:26] 2025-07-27 18:27:53,706 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 18:28:26] 2025-07-27 18:27:53,706 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 18:28:26] 2025-07-27 18:27:53,706 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 18:28:26] 2025-07-27 18:27:53,708 | INFO     | fitting pss+swap vs Time
[2025-07-27 18:28:26] 2025-07-27 18:27:53,708 | INFO     | sum of square deviations: 177275882.0
[2025-07-27 18:28:26] 2025-07-27 18:27:53,708 | INFO     | sum of deviations: -2927218163.0
[2025-07-27 18:28:26] 2025-07-27 18:27:53,708 | INFO     | mean x: 1753638227.0
[2025-07-27 18:28:26] 2025-07-27 18:27:53,708 | INFO     | mean y: 2704166.746987952
[2025-07-27 18:28:26] 2025-07-27 18:27:53,708 | INFO     | -- intersect: 28959162380.30994
[2025-07-27 18:28:26] 2025-07-27 18:27:53,708 | INFO     | intersect: 28959162380.30994
[2025-07-27 18:28:26] 2025-07-27 18:27:53,708 | INFO     | chi2: 0.015759283043477453
[2025-07-27 18:28:26] 2025-07-27 18:27:53,708 | INFO     | -- intersect: 28959162380.30994
[2025-07-27 18:28:26] 2025-07-27 18:27:53,709 | INFO     | current memory leak: -16.51 B/s (using 83 data points, chi2=0.02)
[2025-07-27 18:28:26] 2025-07-27 18:27:53,709 | INFO     | could have reported an average CPU frequency of 3808 MHz (6 samples)
[2025-07-27 18:28:26] 2025-07-27 18:27:53,709 | INFO     | ..............................
[2025-07-27 18:28:26] 2025-07-27 18:27:53,709 | INFO     | . Timing measurements:
[2025-07-27 18:28:26] 2025-07-27 18:27:53,709 | INFO     | . get job = 0 s
[2025-07-27 18:28:26] 2025-07-27 18:27:53,709 | INFO     | . initial setup = 1 s
[2025-07-27 18:28:26] 2025-07-27 18:27:53,709 | INFO     | . payload setup = 2 s
[2025-07-27 18:28:26] 2025-07-27 18:27:53,709 | INFO     | . stage-in = 0 s
[2025-07-27 18:28:26] 2025-07-27 18:27:53,709 | INFO     | . payload execution = 5443 s
[2025-07-27 18:28:26] 2025-07-27 18:27:53,709 | INFO     | . stage-out = 0 s
[2025-07-27 18:28:26] 2025-07-27 18:27:53,709 | INFO     | . log creation = 0 s
[2025-07-27 18:28:26] 2025-07-27 18:27:53,709 | INFO     | ..............................
[2025-07-27 18:28:26] 2025-07-27 18:27:53,771 | INFO     | 
[2025-07-27 18:28:26] 2025-07-27 18:27:53,771 | INFO     | job summary report
[2025-07-27 18:28:26] 2025-07-27 18:27:53,771 | INFO     | --------------------------------------------------
[2025-07-27 18:28:26] 2025-07-27 18:27:53,771 | INFO     | PanDA job id: 6745230290
[2025-07-27 18:28:26] 2025-07-27 18:27:53,771 | INFO     | task id: 45743349
[2025-07-27 18:28:26] 2025-07-27 18:27:53,771 | INFO     | errors: (none)
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | pilot state: finished 
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | transexitcode: 0
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | exeerrorcode: 0
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | exeerrordiag: 
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | exitcode: 0
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | exitmsg: OK
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | cpuconsumptiontime: 28503 s
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | nevents: 400
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | neventsw: 0
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | pid: 1691214
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | pgrp: 1691214
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | corecount: 12
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | event service: False
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | sizes: {0: 2397498, 1: 2397760, 10: 2397788, 5449: 2424449, 5450: 2433549, 5456: 2433687}
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | --------------------------------------------------
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | 
[2025-07-27 18:28:26] 2025-07-27 18:27:53,772 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-07-27 18:28:26] 2025-07-27 18:27:53,783 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,783 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,783 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | job 6745230290 has completed (purged errors)
[2025-07-27 18:28:26] 2025-07-27 18:27:53,784 | INFO     | overall cleanup function is called
[2025-07-27 18:28:26] 2025-07-27 18:27:54,790 | INFO     | --- collectZombieJob: --- 10, [1691214]
[2025-07-27 18:28:26] 2025-07-27 18:27:54,790 | INFO     | zombie collector waiting for pid 1691214
[2025-07-27 18:28:26] 2025-07-27 18:27:54,790 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 18:28:26] 2025-07-27 18:27:54,790 | INFO     | collected zombie processes
[2025-07-27 18:28:26] 2025-07-27 18:27:54,790 | INFO     | will attempt to kill all subprocesses of pid=1691214
[2025-07-27 18:28:26] 2025-07-27 18:27:54,860 | INFO     | process IDs to be killed: [1691214] (in reverse order)
[2025-07-27 18:28:26] 2025-07-27 18:27:54,891 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 18:28:26] 2025-07-27 18:27:54,891 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 18:28:26] 2025-07-27 18:27:54,893 | INFO     | did not find any defunct processes belonging to 1691214
[2025-07-27 18:28:26] 2025-07-27 18:27:54,894 | INFO     | did not find any defunct processes belonging to 1691214
[2025-07-27 18:28:26] 2025-07-27 18:27:54,894 | INFO     | ready for new job
[2025-07-27 18:28:26] 2025-07-27 18:27:54,895 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 18:28:26] 2025-07-27 18:27:54,895 | INFO     | ***************************************
[2025-07-27 18:28:26] 2025-07-27 18:27:54,895 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 18:28:26] 2025-07-27 18:27:54,896 | INFO     | ***************************************
[2025-07-27 18:28:26] 2025-07-27 18:27:54,896 | INFO     | 
[2025-07-27 18:28:26] 2025-07-27 18:27:54,914 | INFO     | architecture information:
[2025-07-27 18:28:26] 2025-07-27 18:27:54,915 | INFO     | executing command: cat /etc/os-release
[2025-07-27 18:28:26] 2025-07-27 18:27:54,922 | INFO     | cat /etc/os-release:
[2025-07-27 18:28:26] NAME="CentOS Linux"
[2025-07-27 18:28:26] VERSION="7 (Core)"
[2025-07-27 18:28:26] ID="centos"
[2025-07-27 18:28:26] ID_LIKE="rhel fedora"
[2025-07-27 18:28:26] VERSION_ID="7"
[2025-07-27 18:28:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 18:28:26] ANSI_COLOR="0;31"
[2025-07-27 18:28:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 18:28:26] HOME_URL="https://www.centos.org/"
[2025-07-27 18:28:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 18:28:26] 
[2025-07-27 18:28:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 18:28:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 18:28:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 18:28:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 18:28:26] 
[2025-07-27 18:28:26] 2025-07-27 18:27:54,922 | INFO     | ***************************************
[2025-07-27 18:28:26] 2025-07-27 18:27:55,425 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-07-27 18:28:26] 2025-07-27 18:27:55,436 | INFO     | sufficient remaining disk space (150125674496 B)
[2025-07-27 18:28:26] 2025-07-27 18:27:55,436 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 18:28:26] 2025-07-27 18:27:55,436 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 18:28:26] 2025-07-27 18:27:55,437 | INFO     | update_server=False
[2025-07-27 18:28:26] 2025-07-27 18:27:55,437 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 18:28:26] 2025-07-27 18:27:55,437 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:28:26] 2025-07-27 18:27:55,437 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 18:28:26] 2025-07-27 18:27:55,863 | INFO     | all payload control threads have been joined
[2025-07-27 18:28:26] 2025-07-27 18:27:56,403 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 18:28:26] 2025-07-27 18:27:56,403 | INFO     | aborting loop
[2025-07-27 18:28:26] 2025-07-27 18:27:56,437 | INFO     | [job] retrieve thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:27:56,437 | INFO     | [job] queue monitor thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:27:56,471 | INFO     | all data control threads have been joined
[2025-07-27 18:28:26] 2025-07-27 18:27:56,504 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:27:56,598 | INFO     | [payload] failed_post thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:27:56,694 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:27:56,750 | INFO     | [job] validate thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:27:56,808 | INFO     | all job control threads have been joined
[2025-07-27 18:28:26] 2025-07-27 18:27:56,866 | INFO     | [payload] control thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:27:57,101 | INFO     | [payload] validate_post thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:27:57,106 | INFO     | [data] copytool_in thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:27:57,191 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:27:57,408 | INFO     | [job] job monitor thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:27:57,442 | INFO     | [data] copytool_out thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:27:57,474 | INFO     | [data] control thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:27:57,567 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 18:28:26] 2025-07-27 18:27:57,814 | INFO     | [job] control thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:27:57,942 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:28:01,574 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 18:28:26] 2025-07-27 18:28:01,746 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140392783443776)>', '<ExcThread(monitor, started 140392213247744)>']
[2025-07-27 18:28:26] 2025-07-27 18:28:06,771 | INFO     | all workflow threads have been joined
[2025-07-27 18:28:26] 2025-07-27 18:28:06,771 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 18:28:26] 2025-07-27 18:28:06,771 | INFO     | traces error code: 0
[2025-07-27 18:28:26] 2025-07-27 18:28:06,771 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 18:28:26] 2025-07-27 18:28:26,216 | INFO     | PID=1684509 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 18:28:26] 2025-07-27 18:28:26,216 | INFO     | .. there are 3 such processes running
[2025-07-27 18:28:26] 2025-07-27 18:28:26,217 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 18:28:26] 2025-07-27 18:28:26,217 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 18:28:26] 2025-07-27 18:28:26,217 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 18:28:26] 2025-07-27 18:28:26,217 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 18:28:26] 2025-07-27 18:28:26,217 | INFO     | [monitor] control thread has ended
[2025-07-27 18:28:26] 2025-07-27 18:28:26,272 [wrapper] ==== pilot stdout END ====
[2025-07-27 18:28:26] 2025-07-27 18:28:26,274 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 18:28:26] 2025-07-27 18:28:26,275 [wrapper] pilotpid: 1684509
[2025-07-27 18:28:26] 2025-07-27 18:28:26,277 [wrapper] Pilot exit status: 0
[2025-07-27 18:28:26] 2025-07-27 18:28:26,283 [wrapper] pandaids: 6745230290
[2025-07-27 18:28:26] 2025-07-27 18:28:26,301 [wrapper] cleanup supervisor_pilot 1748896 1684510
[2025-07-27 18:28:26] 2025-07-27 18:28:26,302 [wrapper] Test setup, not cleaning
[2025-07-27 18:28:26] 2025-07-27 18:28:26,304 [wrapper] apfmon messages muted
[2025-07-27 18:28:26] 2025-07-27 18:28:26,305 [wrapper] ==== wrapper stdout END ====
[2025-07-27 18:28:26] 2025-07-27 18:28:26,307 [wrapper] ==== wrapper stderr END ====
[2025-07-27 18:28:26]  *** Error codes and diagnostics ***
[2025-07-27 18:28:26]     "exeErrorCode": 0,
[2025-07-27 18:28:26]     "exeErrorDiag": "",
[2025-07-27 18:28:26]     "pilotErrorCode": 0,
[2025-07-27 18:28:26]     "pilotErrorDiag": "",
[2025-07-27 18:28:26]  *** Listing of results directory ***
[2025-07-27 18:28:26] total 354664
[2025-07-27 18:28:26] -rw-r--r-- 1 boinc boinc    530466 Jul 26 15:29 pilot3.tar.gz
[2025-07-27 18:28:26] -rw-r--r-- 1 boinc boinc      5112 Jul 26 15:31 queuedata.json
[2025-07-27 18:28:26] -rwx------ 1 boinc boinc     36292 Jul 26 15:32 runpilot2-wrapper.sh
[2025-07-27 18:28:26] -rw-rw-r-- 1 boinc boinc       100 Jul 27 16:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 18:28:26] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 16:56 run_atlas
[2025-07-27 18:28:26] -rw-rw-r-- 1 boinc boinc       105 Jul 27 16:56 job.xml
[2025-07-27 18:28:26] -rw-r--r-- 2 boinc boinc     15095 Jul 27 16:56 start_atlas.sh
[2025-07-27 18:28:26] drwxrwx--x 2 boinc boinc      4096 Jul 27 16:56 shared
[2025-07-27 18:28:26] -rw-r--r-- 2 boinc boinc    542896 Jul 27 16:56 input.tar.gz
[2025-07-27 18:28:26] -rw-rw-r-- 1 boinc boinc      9702 Jul 27 16:56 init_data.xml
[2025-07-27 18:28:26] -rw-r--r-- 2 boinc boinc 149112665 Jul 27 16:56 EVNT.45743347._002292.pool.root.1
[2025-07-27 18:28:26] -rw-rw-r-- 1 boinc boinc         0 Jul 27 16:56 boinc_lockfile
[2025-07-27 18:28:26] -rw-rw-r-- 1 boinc boinc      2563 Jul 27 16:56 pandaJob.out
[2025-07-27 18:28:26] -rw------- 1 boinc boinc    980125 Jul 27 16:56 agis_schedconf.cvmfs.json
[2025-07-27 18:28:26] -rw------- 1 boinc boinc   1593052 Jul 27 16:56 agis_ddmendpoints.agis.ALL.json
[2025-07-27 18:28:26] drwx------ 4 boinc boinc      4096 Jul 27 16:56 pilot3
[2025-07-27 18:28:26] -rw------- 1 boinc boinc 208335150 Jul 27 18:27 HITS.45743349._040187.pool.root.1
[2025-07-27 18:28:26] -rw-rw-r-- 1 boinc boinc       529 Jul 27 18:27 boinc_task_state.xml
[2025-07-27 18:28:26] -rw------- 1 boinc boinc      1020 Jul 27 18:27 memory_monitor_summary.json
[2025-07-27 18:28:26] -rw------- 1 boinc boinc    375741 Jul 27 18:27 log.45743349._040187.job.log.tgz.1
[2025-07-27 18:28:26] -rw------- 1 boinc boinc      7729 Jul 27 18:27 heartbeat.json
[2025-07-27 18:28:26] -rw-rw-r-- 1 boinc boinc      8192 Jul 27 18:28 boinc_mmap_file
[2025-07-27 18:28:26] -rw------- 1 boinc boinc       822 Jul 27 18:28 pilotlog.txt
[2025-07-27 18:28:26] -rw------- 1 boinc boinc        95 Jul 27 18:28 pilot_heartbeat.json
[2025-07-27 18:28:26] -rw-rw-r-- 1 boinc boinc        27 Jul 27 18:28 wrapper_checkpoint.txt
[2025-07-27 18:28:26] -rw------- 1 boinc boinc    548826 Jul 27 18:28 log.45743349._040187.job.log.1
[2025-07-27 18:28:26] -rw------- 1 boinc boinc       357 Jul 27 18:28 output.list
[2025-07-27 18:28:26] -rw-rw-r-- 1 boinc boinc       620 Jul 27 18:28 runtime_log
[2025-07-27 18:28:26] -rw------- 1 boinc boinc    942080 Jul 27 18:28 result.tar.gz
[2025-07-27 18:28:26] -rw-rw-r-- 1 boinc boinc      8954 Jul 27 18:28 runtime_log.err
[2025-07-27 18:28:26] -rw------- 1 boinc boinc       649 Jul 27 18:28 9uxKDmm3vz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmA10KDmct1I2m.diag
[2025-07-27 18:28:26] -rw-rw-r-- 1 boinc boinc     21825 Jul 27 18:28 stderr.txt
[2025-07-27 18:28:26] HITS file was successfully produced:
[2025-07-27 18:28:26] -rw------- 1 boinc boinc 208335150 Jul 27 18:27 shared/HITS.pool.root.1
[2025-07-27 18:28:26]  *** Contents of shared directory: ***
[2025-07-27 18:28:26] total 350552
[2025-07-27 18:28:26] -rw-r--r-- 2 boinc boinc     15095 Jul 27 16:56 start_atlas.sh
[2025-07-27 18:28:26] -rw-r--r-- 2 boinc boinc    542896 Jul 27 16:56 input.tar.gz
[2025-07-27 18:28:26] -rw-r--r-- 2 boinc boinc 149112665 Jul 27 16:56 ATLAS.root_0
[2025-07-27 18:28:26] -rw------- 1 boinc boinc 208335150 Jul 27 18:27 HITS.pool.root.1
[2025-07-27 18:28:26] -rw------- 1 boinc boinc    942080 Jul 27 18:28 result.tar.gz
18:28:28 (1680765): run_atlas exited; CPU time 28525.675154
18:28:28 (1680765): called boinc_finish(0)

</stderr_txt>
]]>

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