Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:49:11 (7463): wrapper (7.7.26015): starting
16:49:11 (7463): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 16:49:11] Arguments: --nthreads 8
[2025-07-26 16:49:11] Threads: 8
[2025-07-26 16:49:11] Checking for CVMFS
[2025-07-26 16:49:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 16:49:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 16:49:11] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 16:49:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 16:49:11] 2.11.2.0 3213 515999 243320 148788 2 59 19903884 20275201 917 130560 0 178346938 99.988 22503472 19699 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 16:49:11] CVMFS is ok
[2025-07-26 16:49:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 16:49:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 16:49:11] Further information can be found at the LHC@home message board.
[2025-07-26 16:49:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 16:49:11] Checking for apptainer binary...
[2025-07-26 16:49:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 16:49:11] Running /usr/bin/apptainer --version
[2025-07-26 16:49:12] apptainer version 1.3.2-1.el7
[2025-07-26 16:49:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 16:49:12] c-205-38.aglt2.org
[2025-07-26 16:49:12] apptainer works
[2025-07-26 16:49:12] Set ATHENA_PROC_NUMBER=8
[2025-07-26 16:49:12] Set ATHENA_CORE_NUMBER=8
[2025-07-26 16:49:12] Starting ATLAS job with PandaID=6745229957
[2025-07-26 16:49:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 17:51:17]  *** The last 200 lines of the pilot log: ***
[2025-07-26 17:51:17]  mtime=0
[2025-07-26 17:51:17]  protocol_id=None
[2025-07-26 17:51:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 17:51:17]  replicas=None
[2025-07-26 17:51:17]  scope=mc23_13p6TeV
[2025-07-26 17:51:17]  status=None
[2025-07-26 17:51:17]  status_code=0
[2025-07-26 17:51:17]  storage_token=
[2025-07-26 17:51:17]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745229957/log.45743349._039865.job.log.tgz.1
[2025-07-26 17:51:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/41/log.45743349._039865.job.log.tgz.1
[2025-07-26 17:51:17]  workdir=None
[2025-07-26 17:51:17] ]
[2025-07-26 17:51:17] 2025-07-26 21:50:38,680 | INFO     | transferring file log.45743349._039865.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745229957/log.45743349._039865.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 17:51:17] 2025-07-26 21:50:38,680 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745229957/log.45743349._039865.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._039865.job
[2025-07-26 17:51:17] 2025-07-26 21:50:38,699 | INFO     | adding to output.list: log.45743349._039865.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/41/log.45743349._039865.job.log.tg
[2025-07-26 17:51:17] 2025-07-26 21:50:38,700 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 17:51:17] 2025-07-26 21:50:38,700 | INFO     | summary of transferred files:
[2025-07-26 17:51:17] 2025-07-26 21:50:38,700 | INFO     |  -- lfn=log.45743349._039865.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 17:51:17] 2025-07-26 21:50:38,701 | INFO     | stage-out finished correctly
[2025-07-26 17:51:17] 2025-07-26 21:50:38,798 | INFO     | number of running child processes to parent process 17517: 1
[2025-07-26 17:51:17] 2025-07-26 21:50:38,798 | INFO     | maximum number of monitored processes: 6
[2025-07-26 17:51:17] 2025-07-26 21:50:39,363 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 17:51:17] 2025-07-26 21:50:41,301 | INFO     | monitor loop #279: job 0:6745229957 is in state 'finished'
[2025-07-26 17:51:17] 2025-07-26 21:50:41,302 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:51:17] 2025-07-26 21:50:42,322 | INFO     | job 6745229957 has state=finished
[2025-07-26 17:51:17] 2025-07-26 21:50:42,323 | INFO     | preparing for final server update for job 6745229957 in state='finished'
[2025-07-26 17:51:17] 2025-07-26 21:50:42,323 | INFO     | this job has now completed (state=finished)
[2025-07-26 17:51:17] 2025-07-26 21:50:42,324 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 17:51:17] 2025-07-26 21:50:42,324 | INFO     | log transfer has been attempted: DONE
[2025-07-26 17:51:17] 2025-07-26 21:50:42,324 | INFO     | job 6745229957 has finished - writing final server update
[2025-07-26 17:51:17] 2025-07-26 21:50:42,324 | INFO     | total number of processed events: 400 (read)
[2025-07-26 17:51:17] 2025-07-26 21:50:42,325 | INFO     | executing command: lscpu
[2025-07-26 17:51:17] 2025-07-26 21:50:42,355 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 17:51:17] 2025-07-26 21:50:42,755 | INFO     | PID=11082 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 17:51:17] 2025-07-26 21:50:42,755 | INFO     | .. there are 2 such processes running
[2025-07-26 17:51:17] 2025-07-26 21:50:43,804 | INFO     | monitor loop #280: job 0:6745229957 is in state 'finished'
[2025-07-26 17:51:17] 2025-07-26 21:50:43,804 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:51:17] 2025-07-26 21:50:44,618 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 17:51:17] 2025-07-26 21:50:44,620 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2784.9849375
[2025-07-26 17:51:17] 2025-07-26 21:50:44,621 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745229957/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 17:51:17] 2025-07-26 21:50:44,622 | INFO     | extracted standard info from prmon json
[2025-07-26 17:51:17] 2025-07-26 21:50:44,622 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 17:51:17] 2025-07-26 21:50:44,622 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 17:51:17] 2025-07-26 21:50:44,622 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 17:51:17] 2025-07-26 21:50:44,622 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 17:51:17] 2025-07-26 21:50:44,623 | INFO     | fitting pss+swap vs Time
[2025-07-26 17:51:17] 2025-07-26 21:50:44,623 | INFO     | sum of square deviations: 46147842.0
[2025-07-26 17:51:17] 2025-07-26 21:50:44,623 | INFO     | sum of deviations: -5065986865.0
[2025-07-26 17:51:17] 2025-07-26 21:50:44,623 | INFO     | mean x: 1753564871.0
[2025-07-26 17:51:17] 2025-07-26 21:50:44,623 | INFO     | mean y: 2617245.6415094337
[2025-07-26 17:51:17] 2025-07-26 21:50:44,623 | INFO     | -- intersect: 192504286195.00256
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | intersect: 192504286195.00256
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | chi2: 0.031846765683823365
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | -- intersect: 192504286195.00256
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | current memory leak: -109.78 B/s (using 53 data points, chi2=0.03)
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | could have reported an average CPU frequency of 2956 MHz (6 samples)
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | ..............................
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | . Timing measurements:
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | . get job = 0 s
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | . initial setup = 2 s
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | . payload setup = 4 s
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | . stage-in = 0 s
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | . payload execution = 3656 s
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | . stage-out = 0 s
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | . log creation = 0 s
[2025-07-26 17:51:17] 2025-07-26 21:50:44,624 | INFO     | ..............................
[2025-07-26 17:51:17] 2025-07-26 21:50:44,669 | INFO     | 
[2025-07-26 17:51:17] 2025-07-26 21:50:44,669 | INFO     | job summary report
[2025-07-26 17:51:17] 2025-07-26 21:50:44,669 | INFO     | --------------------------------------------------
[2025-07-26 17:51:17] 2025-07-26 21:50:44,669 | INFO     | PanDA job id: 6745229957
[2025-07-26 17:51:17] 2025-07-26 21:50:44,669 | INFO     | task id: 45743349
[2025-07-26 17:51:17] 2025-07-26 21:50:44,669 | INFO     | errors: (none)
[2025-07-26 17:51:17] 2025-07-26 21:50:44,669 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 17:51:17] 2025-07-26 21:50:44,669 | INFO     | pilot state: finished 
[2025-07-26 17:51:17] 2025-07-26 21:50:44,669 | INFO     | transexitcode: 0
[2025-07-26 17:51:17] 2025-07-26 21:50:44,670 | INFO     | exeerrorcode: 0
[2025-07-26 17:51:17] 2025-07-26 21:50:44,670 | INFO     | exeerrordiag: 
[2025-07-26 17:51:17] 2025-07-26 21:50:44,670 | INFO     | exitcode: 0
[2025-07-26 17:51:17] 2025-07-26 21:50:44,670 | INFO     | exitmsg: OK
[2025-07-26 17:51:17] 2025-07-26 21:50:44,670 | INFO     | cpuconsumptiontime: 27344 s
[2025-07-26 17:51:17] 2025-07-26 21:50:44,670 | INFO     | nevents: 400
[2025-07-26 17:51:17] 2025-07-26 21:50:44,670 | INFO     | neventsw: 0
[2025-07-26 17:51:17] 2025-07-26 21:50:44,670 | INFO     | pid: 17517
[2025-07-26 17:51:17] 2025-07-26 21:50:44,670 | INFO     | pgrp: 17517
[2025-07-26 17:51:17] 2025-07-26 21:50:44,670 | INFO     | corecount: 8
[2025-07-26 17:51:17] 2025-07-26 21:50:44,670 | INFO     | event service: False
[2025-07-26 17:51:17] 2025-07-26 21:50:44,670 | INFO     | sizes: {0: 2397304, 1: 2397503, 3: 2397765, 11: 2397793, 3664: 2423632, 3665: 2432630, 3666: 2432814, 3671: 2433008}
[2025-07-26 17:51:17] 2025-07-26 21:50:44,670 | INFO     | --------------------------------------------------
[2025-07-26 17:51:17] 2025-07-26 21:50:44,671 | INFO     | 
[2025-07-26 17:51:17] 2025-07-26 21:50:44,671 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 17:51:17] 2025-07-26 21:50:44,691 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,691 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,691 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,692 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,692 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,692 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,692 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,692 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,692 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,692 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,692 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,692 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,692 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,692 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,692 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,693 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,693 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,693 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 17:51:17] 2025-07-26 21:50:44,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,693 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 17:51:17] 2025-07-26 21:50:44,693 | INFO     | job 6745229957 has completed (purged errors)
[2025-07-26 17:51:17] 2025-07-26 21:50:44,693 | INFO     | overall cleanup function is called
[2025-07-26 17:51:17] 2025-07-26 21:50:45,700 | INFO     | --- collectZombieJob: --- 10, [17517]
[2025-07-26 17:51:17] 2025-07-26 21:50:45,701 | INFO     | zombie collector waiting for pid 17517
[2025-07-26 17:51:17] 2025-07-26 21:50:45,701 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 17:51:17] 2025-07-26 21:50:45,701 | INFO     | collected zombie processes
[2025-07-26 17:51:17] 2025-07-26 21:50:45,701 | INFO     | will attempt to kill all subprocesses of pid=17517
[2025-07-26 17:51:17] 2025-07-26 21:50:45,820 | INFO     | process IDs to be killed: [17517] (in reverse order)
[2025-07-26 17:51:17] 2025-07-26 21:50:45,870 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 17:51:17] 2025-07-26 21:50:45,870 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 17:51:17] 2025-07-26 21:50:45,872 | INFO     | did not find any defunct processes belonging to 17517
[2025-07-26 17:51:17] 2025-07-26 21:50:45,874 | INFO     | did not find any defunct processes belonging to 17517
[2025-07-26 17:51:17] 2025-07-26 21:50:45,874 | INFO     | ready for new job
[2025-07-26 17:51:17] 2025-07-26 21:50:45,874 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 17:51:17] 2025-07-26 21:50:45,876 | INFO     | ***************************************
[2025-07-26 17:51:17] 2025-07-26 21:50:45,876 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 17:51:17] 2025-07-26 21:50:45,876 | INFO     | ***************************************
[2025-07-26 17:51:17] 2025-07-26 21:50:45,876 | INFO     | 
[2025-07-26 17:51:17] 2025-07-26 21:50:45,877 | INFO     | architecture information:
[2025-07-26 17:51:17] 2025-07-26 21:50:45,878 | INFO     | executing command: cat /etc/os-release
[2025-07-26 17:51:17] 2025-07-26 21:50:45,891 | INFO     | cat /etc/os-release:
[2025-07-26 17:51:17] NAME="CentOS Linux"
[2025-07-26 17:51:17] VERSION="7 (Core)"
[2025-07-26 17:51:17] ID="centos"
[2025-07-26 17:51:17] ID_LIKE="rhel fedora"
[2025-07-26 17:51:17] VERSION_ID="7"
[2025-07-26 17:51:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 17:51:17] ANSI_COLOR="0;31"
[2025-07-26 17:51:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 17:51:17] HOME_URL="https://www.centos.org/"
[2025-07-26 17:51:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 17:51:17] 
[2025-07-26 17:51:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 17:51:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 17:51:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 17:51:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 17:51:17] 
[2025-07-26 17:51:17] 2025-07-26 21:50:45,891 | INFO     | ***************************************
[2025-07-26 17:51:17] 2025-07-26 21:50:46,394 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 17:51:17] 2025-07-26 21:50:46,412 | INFO     | sufficient remaining disk space (32815185920 B)
[2025-07-26 17:51:17] 2025-07-26 21:50:46,412 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 17:51:17] 2025-07-26 21:50:46,413 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 17:51:17] 2025-07-26 21:50:46,413 | INFO     | update_server=False
[2025-07-26 17:51:17] 2025-07-26 21:50:46,413 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 17:51:17] 2025-07-26 21:50:46,413 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 17:51:17] 2025-07-26 21:50:46,414 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 17:51:17] 2025-07-26 21:50:46,420 | INFO     | all job control threads have been joined
[2025-07-26 17:51:17] 2025-07-26 21:50:46,799 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 17:51:17] 2025-07-26 21:50:47,022 | INFO     | all data control threads have been joined
[2025-07-26 17:51:17] 2025-07-26 21:50:47,312 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 17:51:17] 2025-07-26 21:50:47,313 | INFO     | aborting loop
[2025-07-26 17:51:17] 2025-07-26 21:50:47,415 | INFO     | [job] queue monitor thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:47,417 | INFO     | [job] retrieve thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:47,424 | INFO     | all payload control threads have been joined
[2025-07-26 17:51:17] 2025-07-26 21:50:47,426 | INFO     | [job] control thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:47,481 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:47,482 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:47,482 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:48,028 | INFO     | [data] control thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:48,045 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:48,167 | INFO     | [payload] validate_post thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:48,318 | INFO     | [job] job monitor thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:48,429 | INFO     | [payload] control thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:48,490 | INFO     | [data] copytool_in thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:48,598 | INFO     | [job] validate thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:48,697 | INFO     | [payload] failed_post thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:48,805 | INFO     | [data] copytool_out thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:50,420 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 17:51:17] 2025-07-26 21:50:50,585 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140498945939264)>', '<ExcThread(monitor, started 140498354292480)>']
[2025-07-26 17:51:17] 2025-07-26 21:50:55,610 | INFO     | all workflow threads have been joined
[2025-07-26 17:51:17] 2025-07-26 21:50:55,611 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 17:51:17] 2025-07-26 21:50:55,611 | INFO     | traces error code: 0
[2025-07-26 17:51:17] 2025-07-26 21:50:55,611 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 17:51:17] 2025-07-26 21:51:16,955 | INFO     | PID=11082 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 17:51:17] 2025-07-26 21:51:16,955 | INFO     | .. there are 2 such processes running
[2025-07-26 17:51:17] 2025-07-26 21:51:16,956 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 17:51:17] 2025-07-26 21:51:16,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 17:51:17] 2025-07-26 21:51:16,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 17:51:17] 2025-07-26 21:51:16,956 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 17:51:17] 2025-07-26 21:51:16,956 | INFO     | [monitor] control thread has ended
[2025-07-26 17:51:17] 2025-07-26 21:51:17,068 [wrapper] ==== pilot stdout END ====
[2025-07-26 17:51:17] 2025-07-26 21:51:17,071 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 17:51:17] 2025-07-26 21:51:17,074 [wrapper] pilotpid: 11082
[2025-07-26 17:51:17] 2025-07-26 21:51:17,078 [wrapper] Pilot exit status: 0
[2025-07-26 17:51:17] 2025-07-26 21:51:17,087 [wrapper] pandaids: 6745229957
[2025-07-26 17:51:17] 2025-07-26 21:51:17,119 [wrapper] cleanup supervisor_pilot 28710 11083
[2025-07-26 17:51:17] 2025-07-26 21:51:17,123 [wrapper] Test setup, not cleaning
[2025-07-26 17:51:17] 2025-07-26 21:51:17,125 [wrapper] apfmon messages muted
[2025-07-26 17:51:17] 2025-07-26 21:51:17,128 [wrapper] ==== wrapper stdout END ====
[2025-07-26 17:51:17] 2025-07-26 21:51:17,131 [wrapper] ==== wrapper stderr END ====
[2025-07-26 17:51:17]  *** Error codes and diagnostics ***
[2025-07-26 17:51:17]     "exeErrorCode": 0,
[2025-07-26 17:51:17]     "exeErrorDiag": "",
[2025-07-26 17:51:17]     "pilotErrorCode": 0,
[2025-07-26 17:51:17]     "pilotErrorDiag": "",
[2025-07-26 17:51:17]  *** Listing of results directory ***
[2025-07-26 17:51:17] total 350696
[2025-07-26 17:51:17] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 10:40 pilot3.tar.gz
[2025-07-26 17:51:17] -rwx------ 1 boincer umatlas     36292 Jul 26 11:06 runpilot2-wrapper.sh
[2025-07-26 17:51:17] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 11:06 queuedata.json
[2025-07-26 17:51:17] -rw-r--r-- 1 boincer umatlas       100 Jul 26 16:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 17:51:17] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 16:49 run_atlas
[2025-07-26 17:51:17] -rw-r--r-- 1 boincer umatlas       105 Jul 26 16:49 job.xml
[2025-07-26 17:51:17] -rw-r--r-- 2 boincer umatlas 143279161 Jul 26 16:49 EVNT.45743347._002271.pool.root.1
[2025-07-26 17:51:17] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 16:49 start_atlas.sh
[2025-07-26 17:51:17] drwxrwx--x 2 boincer umatlas      4096 Jul 26 16:49 shared
[2025-07-26 17:51:17] -rw-r--r-- 2 boincer umatlas    542888 Jul 26 16:49 input.tar.gz
[2025-07-26 17:51:17] -rw-r--r-- 1 boincer umatlas         0 Jul 26 16:49 boinc_lockfile
[2025-07-26 17:51:17] -rw-r--r-- 1 boincer umatlas      2563 Jul 26 16:49 pandaJob.out
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas    980125 Jul 26 16:49 agis_schedconf.cvmfs.json
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas   1593052 Jul 26 16:49 agis_ddmendpoints.agis.ALL.json
[2025-07-26 17:51:17] drwx------ 4 boincer umatlas      4096 Jul 26 16:49 pilot3
[2025-07-26 17:51:17] -rw-r--r-- 1 boincer umatlas      6050 Jul 26 17:46 init_data.xml
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas 210607393 Jul 26 17:50 HITS.45743349._039865.pool.root.1
[2025-07-26 17:51:17] -rw-r--r-- 1 boincer umatlas       529 Jul 26 17:50 boinc_task_state.xml
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas      1047 Jul 26 17:50 memory_monitor_summary.json
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas    295669 Jul 26 17:50 log.45743349._039865.job.log.tgz.1
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas      7852 Jul 26 17:50 heartbeat.json
[2025-07-26 17:51:17] -rw-r--r-- 1 boincer umatlas      8192 Jul 26 17:50 boinc_mmap_file
[2025-07-26 17:51:17] -rw-r--r-- 1 boincer umatlas        27 Jul 26 17:50 wrapper_checkpoint.txt
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas       820 Jul 26 17:51 pilotlog.txt
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas        95 Jul 26 17:51 pilot_heartbeat.json
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas    380044 Jul 26 17:51 log.45743349._039865.job.log.1
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas       357 Jul 26 17:51 output.list
[2025-07-26 17:51:17] -rw-r--r-- 1 boincer umatlas       620 Jul 26 17:51 runtime_log
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas    696320 Jul 26 17:51 result.tar.gz
[2025-07-26 17:51:17] -rw-r--r-- 1 boincer umatlas      8660 Jul 26 17:51 runtime_log.err
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas       657 Jul 26 17:51 8DmNDmzevz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmAy0KDmB7kpGn.diag
[2025-07-26 17:51:17] -rw-r--r-- 1 boincer umatlas     21754 Jul 26 17:51 stderr.txt
[2025-07-26 17:51:17] HITS file was successfully produced:
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas 210607393 Jul 26 17:50 shared/HITS.pool.root.1
[2025-07-26 17:51:17]  *** Contents of shared directory: ***
[2025-07-26 17:51:17] total 346828
[2025-07-26 17:51:17] -rw-r--r-- 2 boincer umatlas 143279161 Jul 26 16:49 ATLAS.root_0
[2025-07-26 17:51:17] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 16:49 start_atlas.sh
[2025-07-26 17:51:17] -rw-r--r-- 2 boincer umatlas    542888 Jul 26 16:49 input.tar.gz
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas 210607393 Jul 26 17:50 HITS.pool.root.1
[2025-07-26 17:51:17] -rw------- 1 boincer umatlas    696320 Jul 26 17:51 result.tar.gz
17:51:18 (7463): run_atlas exited; CPU time 27316.501370
17:51:18 (7463): called boinc_finish(0)

</stderr_txt>
]]>

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