Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
15:25:10 (1615488): wrapper (7.7.26015): starting
15:25:10 (1615488): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 15:25:10] Arguments: --nthreads 12
[2025-07-27 15:25:10] Threads: 12
[2025-07-27 15:25:10] Checking for CVMFS
[2025-07-27 15:25:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:25:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:25:10] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:25:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:25:10] 2.13.1.0 50093 7809 73308 148817 3 60 3435289 4096000 207 130560 0 15586432 99.996 287564 285 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-07-27 15:25:10] CVMFS is ok
[2025-07-27 15:25:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:25:10] Checking for apptainer binary...
[2025-07-27 15:25:10] apptainer is not installed, using version from CVMFS
[2025-07-27 15:25:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:25:10] ryzen7
[2025-07-27 15:25:10] apptainer works
[2025-07-27 15:25:10] Set ATHENA_PROC_NUMBER=12
[2025-07-27 15:25:10] Set ATHENA_CORE_NUMBER=12
[2025-07-27 15:25:10] Starting ATLAS job with PandaID=6745230034
[2025-07-27 15:25:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:57:04]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:57:04]  is_tar=False
[2025-07-27 16:57:04]  lfn=log.45743349._039941.job.log.tgz.1
[2025-07-27 16:57:04]  mtime=0
[2025-07-27 16:57:04]  protocol_id=None
[2025-07-27 16:57:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 16:57:04]  replicas=None
[2025-07-27 16:57:04]  scope=mc23_13p6TeV
[2025-07-27 16:57:04]  status=None
[2025-07-27 16:57:04]  status_code=0
[2025-07-27 16:57:04]  storage_token=
[2025-07-27 16:57:04]  surl=/opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6745230034/log.45743349._039941.job.log.tgz.1
[2025-07-27 16:57:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/f6/log.45743349._039941.job.log.tgz.1
[2025-07-27 16:57:04]  workdir=None
[2025-07-27 16:57:04] ]
[2025-07-27 16:57:04] 2025-07-27 16:56:30,439 | INFO     | transferring file log.45743349._039941.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6745230034/log.45743349._039941.job.log.tgz.1 t
[2025-07-27 16:57:04] 2025-07-27 16:56:30,439 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6745230034/log.45743349._039941.job.log.tgz.1 /opt/boinc/instance_home
[2025-07-27 16:57:04] 2025-07-27 16:56:30,447 | INFO     | adding to output.list: log.45743349._039941.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/f6/log.45743349._039941.job.log.tg
[2025-07-27 16:57:04] 2025-07-27 16:56:30,447 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:57:04] 2025-07-27 16:56:30,447 | INFO     | summary of transferred files:
[2025-07-27 16:57:04] 2025-07-27 16:56:30,447 | INFO     |  -- lfn=log.45743349._039941.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:57:04] 2025-07-27 16:56:30,447 | INFO     | stage-out finished correctly
[2025-07-27 16:57:04] 2025-07-27 16:56:30,520 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:57:04] 2025-07-27 16:56:31,295 | WARNING  | process 1637161 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 16:57:04] 2025-07-27 16:56:31,295 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6745230034/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:57:04] 2025-07-27 16:56:31,339 | INFO     | number of running child processes to parent process 1637161: 1
[2025-07-27 16:57:04] 2025-07-27 16:56:31,339 | INFO     | maximum number of monitored processes: 6
[2025-07-27 16:57:04] 2025-07-27 16:56:31,731 | INFO     | 5478s have passed since pilot start - server update state is 'RUNNING'
[2025-07-27 16:57:04] 2025-07-27 16:56:31,967 | INFO     | job 6745230034 has state=finished
[2025-07-27 16:57:04] 2025-07-27 16:56:31,967 | INFO     | preparing for final server update for job 6745230034 in state='finished'
[2025-07-27 16:57:04] 2025-07-27 16:56:31,967 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:57:04] 2025-07-27 16:56:31,967 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:57:04] 2025-07-27 16:56:31,967 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:57:04] 2025-07-27 16:56:31,967 | INFO     | job 6745230034 has finished - writing final server update
[2025-07-27 16:57:04] 2025-07-27 16:56:31,968 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:57:04] 2025-07-27 16:56:31,968 | INFO     | executing command: lscpu
[2025-07-27 16:57:04] 2025-07-27 16:56:31,996 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:57:04] 2025-07-27 16:56:33,383 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 16:57:04] 2025-07-27 16:56:33,385 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3213.0164999999997
[2025-07-27 16:57:04] 2025-07-27 16:56:33,386 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/0/PanDA_Pilot-6745230034/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:57:04] 2025-07-27 16:56:33,386 | INFO     | extracted standard info from prmon json
[2025-07-27 16:57:04] 2025-07-27 16:56:33,386 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:57:04] 2025-07-27 16:56:33,386 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:57:04] 2025-07-27 16:56:33,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:57:04] 2025-07-27 16:56:33,387 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:57:04] 2025-07-27 16:56:33,387 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:57:04] 2025-07-27 16:56:33,387 | INFO     | sum of square deviations: 177275882.0
[2025-07-27 16:57:04] 2025-07-27 16:56:33,387 | INFO     | sum of deviations: -5788654841.000001
[2025-07-27 16:57:04] 2025-07-27 16:56:33,387 | INFO     | mean x: 1753632736.0
[2025-07-27 16:57:04] 2025-07-27 16:56:33,387 | INFO     | mean y: 2758675.4457831327
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | -- intersect: 57264776001.539116
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | intersect: 57264776001.539116
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | chi2: 0.016882696394077672
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | -- intersect: 57264776001.539116
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | current memory leak: -32.65 B/s (using 83 data points, chi2=0.02)
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | could have reported an average CPU frequency of 3638 MHz (6 samples)
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | ..............................
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | . Timing measurements:
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | . get job = 0 s
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | . initial setup = 1 s
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | . payload setup = 2 s
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | . stage-in = 0 s
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | . payload execution = 5458 s
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | . stage-out = 0 s
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | . log creation = 0 s
[2025-07-27 16:57:04] 2025-07-27 16:56:33,388 | INFO     | ..............................
[2025-07-27 16:57:04] 2025-07-27 16:56:33,699 | INFO     | 
[2025-07-27 16:57:04] 2025-07-27 16:56:33,699 | INFO     | job summary report
[2025-07-27 16:57:04] 2025-07-27 16:56:33,699 | INFO     | --------------------------------------------------
[2025-07-27 16:57:04] 2025-07-27 16:56:33,699 | INFO     | PanDA job id: 6745230034
[2025-07-27 16:57:04] 2025-07-27 16:56:33,699 | INFO     | task id: 45743349
[2025-07-27 16:57:04] 2025-07-27 16:56:33,699 | INFO     | errors: (none)
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | pilot state: finished 
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | transexitcode: 0
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | exeerrorcode: 0
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | exeerrordiag: 
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | exitcode: 0
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | exitmsg: OK
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | cpuconsumptiontime: 28253 s
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | nevents: 400
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | neventsw: 0
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | pid: 1637161
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | pgrp: 1637161
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | corecount: 12
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | event service: False
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | sizes: {0: 2397498, 2: 2397760, 11: 2397788, 5464: 2433493, 5467: 2433631}
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | --------------------------------------------------
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | 
[2025-07-27 16:57:04] 2025-07-27 16:56:33,700 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/0
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | job 6745230034 has completed (purged errors)
[2025-07-27 16:57:04] 2025-07-27 16:56:33,709 | INFO     | overall cleanup function is called
[2025-07-27 16:57:04] 2025-07-27 16:56:34,716 | INFO     | --- collectZombieJob: --- 10, [1637161]
[2025-07-27 16:57:04] 2025-07-27 16:56:34,716 | INFO     | zombie collector waiting for pid 1637161
[2025-07-27 16:57:04] 2025-07-27 16:56:34,716 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:57:04] 2025-07-27 16:56:34,716 | INFO     | collected zombie processes
[2025-07-27 16:57:04] 2025-07-27 16:56:34,716 | INFO     | will attempt to kill all subprocesses of pid=1637161
[2025-07-27 16:57:04] 2025-07-27 16:56:34,762 | INFO     | process IDs to be killed: [1637161] (in reverse order)
[2025-07-27 16:57:04] 2025-07-27 16:56:34,782 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:57:04] 2025-07-27 16:56:34,782 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:57:04] 2025-07-27 16:56:34,784 | INFO     | did not find any defunct processes belonging to 1637161
[2025-07-27 16:57:04] 2025-07-27 16:56:34,785 | INFO     | did not find any defunct processes belonging to 1637161
[2025-07-27 16:57:04] 2025-07-27 16:56:34,785 | INFO     | ready for new job
[2025-07-27 16:57:04] 2025-07-27 16:56:34,785 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:57:04] 2025-07-27 16:56:34,786 | INFO     | ***************************************
[2025-07-27 16:57:04] 2025-07-27 16:56:34,786 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:57:04] 2025-07-27 16:56:34,786 | INFO     | ***************************************
[2025-07-27 16:57:04] 2025-07-27 16:56:34,786 | INFO     | 
[2025-07-27 16:57:04] 2025-07-27 16:56:34,802 | INFO     | architecture information:
[2025-07-27 16:57:04] 2025-07-27 16:56:34,802 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:57:04] 2025-07-27 16:56:34,808 | INFO     | cat /etc/os-release:
[2025-07-27 16:57:04] NAME="CentOS Linux"
[2025-07-27 16:57:04] VERSION="7 (Core)"
[2025-07-27 16:57:04] ID="centos"
[2025-07-27 16:57:04] ID_LIKE="rhel fedora"
[2025-07-27 16:57:04] VERSION_ID="7"
[2025-07-27 16:57:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:57:04] ANSI_COLOR="0;31"
[2025-07-27 16:57:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:57:04] HOME_URL="https://www.centos.org/"
[2025-07-27 16:57:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:57:04] 
[2025-07-27 16:57:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:57:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:57:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:57:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:57:04] 
[2025-07-27 16:57:04] 2025-07-27 16:56:34,808 | INFO     | ***************************************
[2025-07-27 16:57:04] 2025-07-27 16:56:35,311 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/0
[2025-07-27 16:57:04] 2025-07-27 16:56:35,317 | INFO     | sufficient remaining disk space (150207463424 B)
[2025-07-27 16:57:04] 2025-07-27 16:56:35,317 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:57:04] 2025-07-27 16:56:35,317 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:57:04] 2025-07-27 16:56:35,317 | INFO     | update_server=False
[2025-07-27 16:57:04] 2025-07-27 16:56:35,317 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:57:04] 2025-07-27 16:56:35,317 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:57:04] 2025-07-27 16:56:35,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:57:04] 2025-07-27 16:56:35,317 | INFO     | aborting loop
[2025-07-27 16:57:04] 2025-07-27 16:56:35,981 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:57:04] 2025-07-27 16:56:36,165 | INFO     | all payload control threads have been joined
[2025-07-27 16:57:04] 2025-07-27 16:56:36,247 | INFO     | job.realtimelogging is not enabled
[2025-07-27 16:57:04] 2025-07-27 16:56:36,267 | INFO     | all job control threads have been joined
[2025-07-27 16:57:04] 2025-07-27 16:56:36,322 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:36,322 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:36,322 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:36,358 | INFO     | all data control threads have been joined
[2025-07-27 16:57:04] 2025-07-27 16:56:36,386 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:36,505 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:36,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:57:04] 2025-07-27 16:56:36,670 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:37,126 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:37,170 | INFO     | [payload] control thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:37,250 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:37,272 | INFO     | [job] control thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:37,363 | INFO     | [data] control thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:37,561 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:37,764 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:37,808 | INFO     | [job] validate thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:37,986 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:40,557 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:57:04] 2025-07-27 16:56:41,674 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139825366124352)>', '<ExcThread(monitor, started 139824933627648)>']
[2025-07-27 16:57:04] 2025-07-27 16:56:46,699 | INFO     | all workflow threads have been joined
[2025-07-27 16:57:04] 2025-07-27 16:56:46,699 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:57:04] 2025-07-27 16:56:46,699 | INFO     | traces error code: 0
[2025-07-27 16:57:04] 2025-07-27 16:56:46,699 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:57:04] 2025-07-27 16:57:04,848 | INFO     | PID=1624191 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 16:57:04] 2025-07-27 16:57:04,848 | INFO     | .. there are 3 such processes running
[2025-07-27 16:57:04] 2025-07-27 16:57:04,848 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:57:04] 2025-07-27 16:57:04,848 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:57:04] 2025-07-27 16:57:04,848 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:57:04] 2025-07-27 16:57:04,848 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:57:04] 2025-07-27 16:57:04,848 | INFO     | [monitor] control thread has ended
[2025-07-27 16:57:04] 2025-07-27 16:57:04,885 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:57:04] 2025-07-27 16:57:04,887 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:57:04] 2025-07-27 16:57:04,888 [wrapper] pilotpid: 1624191
[2025-07-27 16:57:04] 2025-07-27 16:57:04,889 [wrapper] Pilot exit status: 0
[2025-07-27 16:57:04] 2025-07-27 16:57:04,893 [wrapper] pandaids: 6745230034
[2025-07-27 16:57:04] 2025-07-27 16:57:04,906 [wrapper] cleanup supervisor_pilot 1676174 1624193
[2025-07-27 16:57:04] 2025-07-27 16:57:04,907 [wrapper] Test setup, not cleaning
[2025-07-27 16:57:04] 2025-07-27 16:57:04,908 [wrapper] apfmon messages muted
[2025-07-27 16:57:04] 2025-07-27 16:57:04,910 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:57:04] 2025-07-27 16:57:04,911 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:57:04]  *** Error codes and diagnostics ***
[2025-07-27 16:57:04]     "exeErrorCode": 0,
[2025-07-27 16:57:04]     "exeErrorDiag": "",
[2025-07-27 16:57:04]     "pilotErrorCode": 0,
[2025-07-27 16:57:04]     "pilotErrorDiag": "",
[2025-07-27 16:57:04]  *** Listing of results directory ***
[2025-07-27 16:57:04] total 349056
[2025-07-27 16:57:04] -rw-r--r-- 1 boinc boinc    530466 Jul 26 14:40 pilot3.tar.gz
[2025-07-27 16:57:04] -rw-r--r-- 1 boinc boinc      5112 Jul 26 15:07 queuedata.json
[2025-07-27 16:57:04] -rwx------ 1 boinc boinc     36292 Jul 26 15:08 runpilot2-wrapper.sh
[2025-07-27 16:57:04] -rw-rw-r-- 1 boinc boinc       100 Jul 27 15:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:57:04] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 15:25 run_atlas
[2025-07-27 16:57:04] -rw-rw-r-- 1 boinc boinc       105 Jul 27 15:25 job.xml
[2025-07-27 16:57:04] -rw-r--r-- 2 boinc boinc     15095 Jul 27 15:25 start_atlas.sh
[2025-07-27 16:57:04] drwxrwx--x 2 boinc boinc      4096 Jul 27 15:25 shared
[2025-07-27 16:57:04] -rw-r--r-- 2 boinc boinc    542901 Jul 27 15:25 input.tar.gz
[2025-07-27 16:57:04] -rw-rw-r-- 1 boinc boinc      9702 Jul 27 15:25 init_data.xml
[2025-07-27 16:57:04] -rw-r--r-- 2 boinc boinc 143877242 Jul 27 15:25 EVNT.45743347._002276.pool.root.1
[2025-07-27 16:57:04] -rw-rw-r-- 1 boinc boinc         0 Jul 27 15:25 boinc_lockfile
[2025-07-27 16:57:04] -rw-rw-r-- 1 boinc boinc      2563 Jul 27 15:25 pandaJob.out
[2025-07-27 16:57:04] -rw------- 1 boinc boinc    980101 Jul 27 15:25 agis_schedconf.cvmfs.json
[2025-07-27 16:57:04] -rw------- 1 boinc boinc   1593052 Jul 27 15:25 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:57:04] drwx------ 4 boinc boinc      4096 Jul 27 15:25 pilot3
[2025-07-27 16:57:04] -rw------- 1 boinc boinc 207827995 Jul 27 16:56 HITS.45743349._039941.pool.root.1
[2025-07-27 16:57:04] -rw-rw-r-- 1 boinc boinc       530 Jul 27 16:56 boinc_task_state.xml
[2025-07-27 16:57:04] -rw------- 1 boinc boinc      1034 Jul 27 16:56 memory_monitor_summary.json
[2025-07-27 16:57:04] -rw------- 1 boinc boinc        95 Jul 27 16:56 pilot_heartbeat.json
[2025-07-27 16:57:04] -rw------- 1 boinc boinc    370282 Jul 27 16:56 log.45743349._039941.job.log.tgz.1
[2025-07-27 16:57:04] -rw------- 1 boinc boinc      7733 Jul 27 16:56 heartbeat.json
[2025-07-27 16:57:04] -rw-rw-r-- 1 boinc boinc      8192 Jul 27 16:56 boinc_mmap_file
[2025-07-27 16:57:04] -rw-rw-r-- 1 boinc boinc        27 Jul 27 16:56 wrapper_checkpoint.txt
[2025-07-27 16:57:04] -rw------- 1 boinc boinc       822 Jul 27 16:57 pilotlog.txt
[2025-07-27 16:57:04] -rw------- 1 boinc boinc    549837 Jul 27 16:57 log.45743349._039941.job.log.1
[2025-07-27 16:57:04] -rw-rw-r-- 1 boinc boinc       620 Jul 27 16:57 runtime_log
[2025-07-27 16:57:04] -rw------- 1 boinc boinc    942080 Jul 27 16:57 result.tar.gz
[2025-07-27 16:57:04] -rw------- 1 boinc boinc       357 Jul 27 16:57 output.list
[2025-07-27 16:57:04] -rw-rw-r-- 1 boinc boinc      8954 Jul 27 16:57 runtime_log.err
[2025-07-27 16:57:04] -rw------- 1 boinc boinc       648 Jul 27 16:57 hP3KDmTgvz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmYy0KDmqlyZOm.diag
[2025-07-27 16:57:04] -rw-rw-r-- 1 boinc boinc     21378 Jul 27 16:57 stderr.txt
[2025-07-27 16:57:04] HITS file was successfully produced:
[2025-07-27 16:57:04] -rw------- 1 boinc boinc 207827995 Jul 27 16:56 shared/HITS.pool.root.1
[2025-07-27 16:57:04]  *** Contents of shared directory: ***
[2025-07-27 16:57:04] total 344944
[2025-07-27 16:57:04] -rw-r--r-- 2 boinc boinc     15095 Jul 27 15:25 start_atlas.sh
[2025-07-27 16:57:04] -rw-r--r-- 2 boinc boinc    542901 Jul 27 15:25 input.tar.gz
[2025-07-27 16:57:04] -rw-r--r-- 2 boinc boinc 143877242 Jul 27 15:25 ATLAS.root_0
[2025-07-27 16:57:04] -rw------- 1 boinc boinc 207827995 Jul 27 16:56 HITS.pool.root.1
[2025-07-27 16:57:04] -rw------- 1 boinc boinc    942080 Jul 27 16:57 result.tar.gz
16:57:06 (1615488): run_atlas exited; CPU time 28275.129680
16:57:06 (1615488): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN