Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
00:42:22 (248380): wrapper (7.7.26015): starting
00:42:22 (248380): wrapper: running run_atlas (--nthreads 4)
[2025-07-27 00:42:22] Arguments: --nthreads 4
[2025-07-27 00:42:22] Threads: 4
[2025-07-27 00:42:22] Checking for CVMFS
[2025-07-27 00:42:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 00:42:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 00:42:22] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 00:42:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 00:42:22] 2.13.0.0 3104146 1388 86892 148792 1 188 2605898 4096001 2766 130560 0 3668614 99.997 47655 880 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-07-27 00:42:22] CVMFS is ok
[2025-07-27 00:42:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 00:42:22] Small home clusters do not require a local http proxy but it is suggested if
[2025-07-27 00:42:22] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-07-27 00:42:22] Further information can be found at the LHC@home message board.
[2025-07-27 00:42:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 00:42:22] Checking for apptainer binary...
[2025-07-27 00:42:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 00:42:22] Running /usr/bin/apptainer --version
[2025-07-27 00:42:22] apptainer version 1.2.3
[2025-07-27 00:42:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 00:42:22] Ryzen-7-7700-Zen4-Deb12
[2025-07-27 00:42:22] apptainer works
[2025-07-27 00:42:22] Set ATHENA_PROC_NUMBER=4
[2025-07-27 00:42:22] Set ATHENA_CORE_NUMBER=4
[2025-07-27 00:42:22] Starting ATLAS job with PandaID=6745185932
[2025-07-27 00:42:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 02:06:06]  *** The last 200 lines of the pilot log: ***
[2025-07-27 02:06:06]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-6745185932/log.45743349._037858.job.log.tgz.1
[2025-07-27 02:06:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/cc/log.45743349._037858.job.log.tgz.1
[2025-07-27 02:06:06]  workdir=None
[2025-07-27 02:06:06] ]
[2025-07-27 02:06:06] 2025-07-27 00:05:28,036 | INFO     | transferring file log.45743349._037858.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6745185932/log.45743349._037858.job.log.tgz.1 to /var/lib/boinc
[2025-07-27 02:06:06] 2025-07-27 00:05:28,037 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6745185932/log.45743349._037858.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.457433
[2025-07-27 02:06:06] 2025-07-27 00:05:28,069 | INFO     | adding to output.list: log.45743349._037858.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/cc/log.45743349._037858.job.log.tg
[2025-07-27 02:06:06] 2025-07-27 00:05:28,069 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 02:06:06] 2025-07-27 00:05:28,069 | INFO     | summary of transferred files:
[2025-07-27 02:06:06] 2025-07-27 00:05:28,069 | INFO     |  -- lfn=log.45743349._037858.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 02:06:06] 2025-07-27 00:05:28,069 | INFO     | stage-out finished correctly
[2025-07-27 02:06:06] 2025-07-27 00:05:30,154 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 02:06:06] 2025-07-27 00:05:32,715 | INFO     | job 6745185932 has state=finished
[2025-07-27 02:06:06] 2025-07-27 00:05:32,715 | INFO     | preparing for final server update for job 6745185932 in state='finished'
[2025-07-27 02:06:06] 2025-07-27 00:05:32,716 | INFO     | this job has now completed (state=finished)
[2025-07-27 02:06:06] 2025-07-27 00:05:32,716 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 02:06:06] 2025-07-27 00:05:32,716 | INFO     | log transfer has been attempted: DONE
[2025-07-27 02:06:06] 2025-07-27 00:05:32,716 | INFO     | job 6745185932 has finished - writing final server update
[2025-07-27 02:06:06] 2025-07-27 00:05:32,716 | INFO     | total number of processed events: 400 (read)
[2025-07-27 02:06:06] 2025-07-27 00:05:32,716 | INFO     | executing command: lscpu
[2025-07-27 02:06:06] 2025-07-27 00:05:32,730 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 02:06:06] 2025-07-27 00:05:34,033 | WARNING  | process 258568 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 02:06:06] 2025-07-27 00:05:34,034 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6745185932/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 02:06:06] 2025-07-27 00:05:34,034 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6745185932/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 02:06:06] 2025-07-27 00:05:34,035 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2038219 B
[2025-07-27 02:06:06] 2025-07-27 00:05:34,035 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15797 B
[2025-07-27 02:06:06] 2025-07-27 00:05:34,035 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-07-27 02:06:06] 2025-07-27 00:05:34,241 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-27 02:06:06] 2025-07-27 00:05:34,245 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4940.987625
[2025-07-27 02:06:06] 2025-07-27 00:05:34,247 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6745185932/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 02:06:06] 2025-07-27 00:05:34,247 | INFO     | extracted standard info from prmon json
[2025-07-27 02:06:06] 2025-07-27 00:05:34,247 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 02:06:06] 2025-07-27 00:05:34,247 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 02:06:06] 2025-07-27 00:05:34,247 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 02:06:06] 2025-07-27 00:05:34,247 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 02:06:06] 2025-07-27 00:05:34,248 | INFO     | fitting pss+swap vs Time
[2025-07-27 02:06:06] 2025-07-27 00:05:34,248 | INFO     | sum of square deviations: 130793150.0
[2025-07-27 02:06:06] 2025-07-27 00:05:34,248 | INFO     | sum of deviations: -4756113940.999999
[2025-07-27 02:06:06] 2025-07-27 00:05:34,249 | INFO     | sufficient remaining disk space (884818837504 B)
[2025-07-27 02:06:06] 2025-07-27 00:05:34,249 | INFO     | mean x: 1753572326.0
[2025-07-27 02:06:06] 2025-07-27 00:05:34,249 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-27 02:06:06] 2025-07-27 00:05:34,249 | INFO     | mean y: 2388001.933333333
[2025-07-27 02:06:06] 2025-07-27 00:05:34,249 | INFO     | -- intersect: 63768646297.87922
[2025-07-27 02:06:06] 2025-07-27 00:05:34,249 | INFO     | intersect: 63768646297.87922
[2025-07-27 02:06:06] 2025-07-27 00:05:34,249 | INFO     | chi2: 0.018250572400307738
[2025-07-27 02:06:06] 2025-07-27 00:05:34,249 | INFO     | -- intersect: 63768646297.87922
[2025-07-27 02:06:06] 2025-07-27 00:05:34,249 | INFO     | current memory leak: -36.36 B/s (using 75 data points, chi2=0.02)
[2025-07-27 02:06:06] 2025-07-27 00:05:34,249 | INFO     | could have reported an average CPU frequency of 4843 MHz (6 samples)
[2025-07-27 02:06:06] 2025-07-27 00:05:34,249 | INFO     | ..............................
[2025-07-27 02:06:06] 2025-07-27 00:05:34,250 | INFO     | . Timing measurements:
[2025-07-27 02:06:06] 2025-07-27 00:05:34,250 | INFO     | . get job = 0 s
[2025-07-27 02:06:06] 2025-07-27 00:05:34,250 | INFO     | . initial setup = 1 s
[2025-07-27 02:06:06] 2025-07-27 00:05:34,250 | INFO     | . payload setup = 2 s
[2025-07-27 02:06:06] 2025-07-27 00:05:34,250 | INFO     | . stage-in = 0 s
[2025-07-27 02:06:06] 2025-07-27 00:05:34,250 | INFO     | . payload execution = 4962 s
[2025-07-27 02:06:06] 2025-07-27 00:05:34,250 | INFO     | . stage-out = 0 s
[2025-07-27 02:06:06] 2025-07-27 00:05:34,250 | INFO     | . log creation = 0 s
[2025-07-27 02:06:06] 2025-07-27 00:05:34,250 | INFO     | ..............................
[2025-07-27 02:06:06] 2025-07-27 00:05:34,250 | INFO     | size of work directory /var/lib/boinc-client/slots/3/PanDA_Pilot-6745185932: 2336419 B (within 2537553920 B limit)
[2025-07-27 02:06:06] 2025-07-27 00:05:34,250 | INFO     | pfn file=/var/lib/boinc-client/slots/3/PanDA_Pilot-6745185932/HITS.45743349._037858.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-27 02:06:06] 2025-07-27 00:05:34,250 | INFO     | total size of present files: 0 B (workdir size: 2336419 B)
[2025-07-27 02:06:06] 2025-07-27 00:05:34,250 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/3/PanDA_Pilot-6745185932/HITS.45743349._037858.pool.root.1 since it does not exist
[2025-07-27 02:06:06] 2025-07-27 00:05:34,331 | INFO     | number of running child processes to parent process 258568: 1
[2025-07-27 02:06:06] 2025-07-27 00:05:34,331 | INFO     | maximum number of monitored processes: 6
[2025-07-27 02:06:06] 2025-07-27 00:05:34,331 | INFO     | aborting job monitoring since job object (job id=6745185932) has expired
[2025-07-27 02:06:06] 2025-07-27 00:05:34,519 | INFO     | 
[2025-07-27 02:06:06] 2025-07-27 00:05:34,519 | INFO     | job summary report
[2025-07-27 02:06:06] 2025-07-27 00:05:34,519 | INFO     | --------------------------------------------------
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | PanDA job id: 6745185932
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | task id: 45743349
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | errors: (none)
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | pilot state: finished 
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | transexitcode: 0
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | exeerrorcode: 0
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | exeerrordiag: 
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | exitcode: 0
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | exitmsg: OK
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | cpuconsumptiontime: 19154 s
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | nevents: 400
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | neventsw: 0
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | pid: 258568
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | pgrp: 258568
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | corecount: 4
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | event service: False
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | sizes: {0: 2397482, 2: 2397744, 11: 2397772, 4967: 2424158, 4968: 2433225, 4970: 2433225, 4974: 2433575}
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | --------------------------------------------------
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | 
[2025-07-27 02:06:06] 2025-07-27 00:05:34,520 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-07-27 02:06:06] 2025-07-27 00:05:34,530 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,530 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,530 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,530 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,530 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,530 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,530 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,530 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,531 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,531 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,531 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,531 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,531 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,531 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,531 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,531 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,531 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,531 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 02:06:06] 2025-07-27 00:05:34,531 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,531 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 02:06:06] 2025-07-27 00:05:34,531 | INFO     | job 6745185932 has completed (purged errors)
[2025-07-27 02:06:06] 2025-07-27 00:05:34,531 | INFO     | overall cleanup function is called
[2025-07-27 02:06:06] 2025-07-27 00:05:35,537 | INFO     | --- collectZombieJob: --- 10, [258568]
[2025-07-27 02:06:06] 2025-07-27 00:05:35,537 | INFO     | zombie collector waiting for pid 258568
[2025-07-27 02:06:06] 2025-07-27 00:05:35,537 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 02:06:06] 2025-07-27 00:05:35,538 | INFO     | collected zombie processes
[2025-07-27 02:06:06] 2025-07-27 00:05:35,538 | INFO     | will attempt to kill all subprocesses of pid=258568
[2025-07-27 02:06:06] 2025-07-27 00:05:35,579 | INFO     | process IDs to be killed: [258568] (in reverse order)
[2025-07-27 02:06:06] 2025-07-27 00:05:35,605 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 02:06:06] 2025-07-27 00:05:35,605 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 02:06:06] 2025-07-27 00:05:35,606 | INFO     | did not find any defunct processes belonging to 258568
[2025-07-27 02:06:06] 2025-07-27 00:05:35,608 | INFO     | did not find any defunct processes belonging to 258568
[2025-07-27 02:06:06] 2025-07-27 00:05:35,608 | INFO     | ready for new job
[2025-07-27 02:06:06] 2025-07-27 00:05:35,608 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 02:06:06] 2025-07-27 00:05:35,608 | INFO     | ***************************************
[2025-07-27 02:06:06] 2025-07-27 00:05:35,609 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 02:06:06] 2025-07-27 00:05:35,609 | INFO     | ***************************************
[2025-07-27 02:06:06] 2025-07-27 00:05:35,609 | INFO     | 
[2025-07-27 02:06:06] 2025-07-27 00:05:35,609 | INFO     | architecture information:
[2025-07-27 02:06:06] 2025-07-27 00:05:35,609 | INFO     | executing command: cat /etc/os-release
[2025-07-27 02:06:06] 2025-07-27 00:05:35,617 | INFO     | cat /etc/os-release:
[2025-07-27 02:06:06] NAME="CentOS Linux"
[2025-07-27 02:06:06] VERSION="7 (Core)"
[2025-07-27 02:06:06] ID="centos"
[2025-07-27 02:06:06] ID_LIKE="rhel fedora"
[2025-07-27 02:06:06] VERSION_ID="7"
[2025-07-27 02:06:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 02:06:06] ANSI_COLOR="0;31"
[2025-07-27 02:06:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 02:06:06] HOME_URL="https://www.centos.org/"
[2025-07-27 02:06:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 02:06:06] 
[2025-07-27 02:06:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 02:06:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 02:06:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 02:06:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 02:06:06] 
[2025-07-27 02:06:06] 2025-07-27 00:05:35,617 | INFO     | ***************************************
[2025-07-27 02:06:06] 2025-07-27 00:05:36,119 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-07-27 02:06:06] 2025-07-27 00:05:36,127 | INFO     | sufficient remaining disk space (884821983232 B)
[2025-07-27 02:06:06] 2025-07-27 00:05:36,128 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 02:06:06] 2025-07-27 00:05:36,128 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 02:06:06] 2025-07-27 00:05:36,128 | INFO     | update_server=False
[2025-07-27 02:06:06] 2025-07-27 00:05:36,128 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 02:06:06] 2025-07-27 00:05:36,128 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 02:06:06] 2025-07-27 00:05:36,128 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 02:06:06] 2025-07-27 00:05:36,128 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 02:06:06] 2025-07-27 00:05:36,128 | INFO     | aborting loop
[2025-07-27 02:06:06] 2025-07-27 00:05:36,198 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 02:06:06] 2025-07-27 00:05:37,055 | INFO     | all payload control threads have been joined
[2025-07-27 02:06:06] 2025-07-27 00:05:37,131 | INFO     | [job] job monitor thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:37,132 | INFO     | [job] retrieve thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:37,132 | INFO     | [job] queue monitor thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:37,147 | INFO     | all data control threads have been joined
[2025-07-27 02:06:06] 2025-07-27 00:05:37,239 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:37,327 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:37,461 | INFO     | all job control threads have been joined
[2025-07-27 02:06:06] 2025-07-27 00:05:37,655 | INFO     | [data] copytool_in thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:38,031 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:38,057 | INFO     | [payload] failed_post thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:38,059 | INFO     | [payload] control thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:38,133 | INFO     | [data] copytool_out thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:38,151 | INFO     | [data] control thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:38,331 | INFO     | [payload] validate_post thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:38,463 | INFO     | [job] control thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:38,501 | INFO     | [job] validate thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:38,548 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:40,204 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 02:06:06] 2025-07-27 00:05:41,808 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139850175883072)>', '<ExcThread(monitor, started 139849671620352)>']
[2025-07-27 02:06:06] 2025-07-27 00:05:46,831 | INFO     | all workflow threads have been joined
[2025-07-27 02:06:06] 2025-07-27 00:05:46,831 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 02:06:06] 2025-07-27 00:05:46,832 | INFO     | traces error code: 0
[2025-07-27 02:06:06] 2025-07-27 00:05:46,832 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 02:06:06] 2025-07-27 00:06:06,703 | INFO     | PID=252060 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 02:06:06] 2025-07-27 00:06:06,703 | INFO     | .. there are 4 such processes running
[2025-07-27 02:06:06] 2025-07-27 00:06:06,703 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 02:06:06] 2025-07-27 00:06:06,703 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 02:06:06] 2025-07-27 00:06:06,703 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 02:06:06] 2025-07-27 00:06:06,703 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 02:06:06] 2025-07-27 00:06:06,703 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 02:06:06] 2025-07-27 00:06:06,703 | INFO     | [monitor] control thread has ended
[2025-07-27 02:06:06] 2025-07-27 00:06:06,774 [wrapper] ==== pilot stdout END ====
[2025-07-27 02:06:06] 2025-07-27 00:06:06,775 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 02:06:06] 2025-07-27 00:06:06,777 [wrapper] pilotpid: 252060
[2025-07-27 02:06:06] 2025-07-27 00:06:06,778 [wrapper] Pilot exit status: 0
[2025-07-27 02:06:06] 2025-07-27 00:06:06,782 [wrapper] pandaids: 6745185932
[2025-07-27 02:06:06] 2025-07-27 00:06:06,795 [wrapper] cleanup supervisor_pilot  303597 252061
[2025-07-27 02:06:06] 2025-07-27 00:06:06,796 [wrapper] Test setup, not cleaning
[2025-07-27 02:06:06] 2025-07-27 00:06:06,797 [wrapper] apfmon messages muted
[2025-07-27 02:06:06] 2025-07-27 00:06:06,798 [wrapper] ==== wrapper stdout END ====
[2025-07-27 02:06:06] 2025-07-27 00:06:06,799 [wrapper] ==== wrapper stderr END ====
[2025-07-27 02:06:06]  *** Error codes and diagnostics ***
[2025-07-27 02:06:06]     "exeErrorCode": 0,
[2025-07-27 02:06:06]     "exeErrorDiag": "",
[2025-07-27 02:06:06]     "pilotErrorCode": 0,
[2025-07-27 02:06:06]     "pilotErrorDiag": "",
[2025-07-27 02:06:06]  *** Listing of results directory ***
[2025-07-27 02:06:06] total 348160
[2025-07-27 02:06:06] -rw-r--r-- 1 boinc boinc    530466 Jul 26 14:28 pilot3.tar.gz
[2025-07-27 02:06:06] -rwx------ 1 boinc boinc     36292 Jul 26 14:33 runpilot2-wrapper.sh
[2025-07-27 02:06:06] -rw-r--r-- 1 boinc boinc      5112 Jul 26 14:33 queuedata.json
[2025-07-27 02:06:06] -rw-r--r-- 1 boinc boinc       100 Jul 27 00:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 02:06:06] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 00:42 run_atlas
[2025-07-27 02:06:06] -rw-r--r-- 1 boinc boinc       105 Jul 27 00:42 job.xml
[2025-07-27 02:06:06] -rw-r--r-- 1 boinc boinc      9223 Jul 27 00:42 init_data.xml
[2025-07-27 02:06:06] -rw-r--r-- 2 boinc boinc 145738846 Jul 27 00:42 EVNT.45743347._002166.pool.root.1
[2025-07-27 02:06:06] -rw-r--r-- 2 boinc boinc     15095 Jul 27 00:42 start_atlas.sh
[2025-07-27 02:06:06] drwxrwx--x 2 boinc boinc      4096 Jul 27 00:42 shared
[2025-07-27 02:06:06] -rw-r--r-- 2 boinc boinc    542898 Jul 27 00:42 input.tar.gz
[2025-07-27 02:06:06] -rw-r--r-- 1 boinc boinc         0 Jul 27 00:42 boinc_lockfile
[2025-07-27 02:06:06] -rw-r--r-- 1 boinc boinc      2563 Jul 27 00:42 pandaJob.out
[2025-07-27 02:06:06] -rw------- 1 boinc boinc    980125 Jul 27 00:42 agis_schedconf.cvmfs.json
[2025-07-27 02:06:06] -rw------- 1 boinc boinc   1593052 Jul 27 00:42 agis_ddmendpoints.agis.ALL.json
[2025-07-27 02:06:06] drwx------ 4 boinc boinc      4096 Jul 27 00:42 pilot3
[2025-07-27 02:06:06] -rw------- 1 boinc boinc 205425948 Jul 27 02:05 HITS.45743349._037858.pool.root.1
[2025-07-27 02:06:06] -rw------- 1 boinc boinc        95 Jul 27 02:05 pilot_heartbeat.json
[2025-07-27 02:06:06] -rw-r--r-- 1 boinc boinc       530 Jul 27 02:05 boinc_task_state.xml
[2025-07-27 02:06:06] -rw------- 1 boinc boinc      1018 Jul 27 02:05 memory_monitor_summary.json
[2025-07-27 02:06:06] -rw------- 1 boinc boinc    235101 Jul 27 02:05 log.45743349._037858.job.log.tgz.1
[2025-07-27 02:06:06] -rw------- 1 boinc boinc      7754 Jul 27 02:05 heartbeat.json
[2025-07-27 02:06:06] -rw-r--r-- 1 boinc boinc        27 Jul 27 02:05 wrapper_checkpoint.txt
[2025-07-27 02:06:06] -rw-r--r-- 1 boinc boinc      8192 Jul 27 02:05 boinc_mmap_file
[2025-07-27 02:06:06] -rw------- 1 boinc boinc       891 Jul 27 02:06 pilotlog.txt
[2025-07-27 02:06:06] -rw------- 1 boinc boinc    498892 Jul 27 02:06 log.45743349._037858.job.log.1
[2025-07-27 02:06:06] -rw------- 1 boinc boinc       357 Jul 27 02:06 output.list
[2025-07-27 02:06:06] -rw-r--r-- 1 boinc boinc       620 Jul 27 02:06 runtime_log
[2025-07-27 02:06:06] -rw------- 1 boinc boinc    757760 Jul 27 02:06 result.tar.gz
[2025-07-27 02:06:06] -rw-r--r-- 1 boinc boinc      8783 Jul 27 02:06 runtime_log.err
[2025-07-27 02:06:06] -rw------- 1 boinc boinc       655 Jul 27 02:06 C5jNDmdGtz7n9Rq4apOajLDm4fhM0noT9bVof3QYDm2k0KDmRywQym.diag
[2025-07-27 02:06:06] -rw-r--r-- 1 boinc boinc     22668 Jul 27 02:06 stderr.txt
[2025-07-27 02:06:06] HITS file was successfully produced:
[2025-07-27 02:06:06] -rw------- 1 boinc boinc 205425948 Jul 27 02:05 shared/HITS.pool.root.1
[2025-07-27 02:06:06]  *** Contents of shared directory: ***
[2025-07-27 02:06:06] total 344232
[2025-07-27 02:06:06] -rw-r--r-- 2 boinc boinc 145738846 Jul 27 00:42 ATLAS.root_0
[2025-07-27 02:06:06] -rw-r--r-- 2 boinc boinc     15095 Jul 27 00:42 start_atlas.sh
[2025-07-27 02:06:06] -rw-r--r-- 2 boinc boinc    542898 Jul 27 00:42 input.tar.gz
[2025-07-27 02:06:06] -rw------- 1 boinc boinc 205425948 Jul 27 02:05 HITS.pool.root.1
[2025-07-27 02:06:06] -rw------- 1 boinc boinc    757760 Jul 27 02:06 result.tar.gz
02:06:08 (248380): run_atlas exited; CPU time 19173.906188
02:06:08 (248380): called boinc_finish(0)

</stderr_txt>
]]>

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