Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-07-26 22:28:29 (47748): Detected: vboxwrapper 26206
2025-07-26 22:28:29 (47748): Detected: BOINC client v8.2.5
2025-07-26 22:28:30 (47748): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-07-26 22:28:30 (47748): Successfully copied 'init_data.xml' to the shared directory.
2025-07-26 22:28:31 (47748): Create VM. (boinc_d86b27212a65a202, slot#36)
2025-07-26 22:28:31 (47748): Setting Memory Size for VM. (4096MB)
2025-07-26 22:28:31 (47748): Setting CPU Count for VM. (1)
2025-07-26 22:28:32 (47748): Setting Chipset Options for VM.
2025-07-26 22:28:32 (47748): Setting Graphics Controller Options for VM.
2025-07-26 22:28:32 (47748): Setting Boot Options for VM.
2025-07-26 22:28:32 (47748): Setting Network Configuration for NAT.
2025-07-26 22:28:33 (47748): Enabling VM Network Access.
2025-07-26 22:28:33 (47748): Disabling USB Support for VM.
2025-07-26 22:28:33 (47748): Disabling COM Port Support for VM.
2025-07-26 22:28:33 (47748): Disabling LPT Port Support for VM.
2025-07-26 22:28:34 (47748): Disabling Audio Support for VM.
2025-07-26 22:28:34 (47748): Disabling Clipboard Support for VM.
2025-07-26 22:28:34 (47748): Disabling Drag and Drop Support for VM.
2025-07-26 22:28:34 (47748): Adding storage controller(s) to VM.
2025-07-26 22:28:35 (47748): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-07-26 22:28:35 (47748): Adding VirtualBox Guest Additions to VM.
2025-07-26 22:28:35 (47748): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-07-26 22:28:36 (47748): forwarding host port 61382 to guest port 80
2025-07-26 22:28:36 (47748): Enabling remote desktop for VM.
2025-07-26 22:28:36 (47748): Required extension pack not installed, remote desktop not enabled.
2025-07-26 22:28:36 (47748): Enabling shared directory for VM.
2025-07-26 22:28:37 (47748): Starting VM using VBoxManage interface. (boinc_d86b27212a65a202, slot#36)
2025-07-26 22:28:42 (47748): Successfully started VM. (PID = '61792')
2025-07-26 22:28:42 (47748): Reporting VM Process ID to BOINC.
2025-07-26 22:28:42 (47748): Guest Log: BIOS: VirtualBox 7.1.8
2025-07-26 22:28:42 (47748): Guest Log: CPUID EDX: 0x178bfbff
2025-07-26 22:28:42 (47748): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-07-26 22:28:42 (47748): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-07-26 22:28:42 (47748): VM state change detected. (old = 'poweredoff', new = 'running')
2025-07-26 22:28:42 (47748): Detected: Web Application Enabled (http://localhost:61382)
2025-07-26 22:28:42 (47748): Preference change detected
2025-07-26 22:28:42 (47748): Setting CPU throttle for VM. (100%)
2025-07-26 22:28:42 (47748): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-07-26 22:28:44 (47748): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-07-26 22:28:44 (47748): Guest Log: BIOS: Booting from Hard Disk...
2025-07-26 22:28:46 (47748): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-07-26 22:28:46 (47748): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-07-26 22:28:46 (47748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-07-26 22:28:49 (47748): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-07-26 22:28:49 (47748): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-07-26 22:28:55 (47748): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-07-26 22:28:55 (47748): Guest Log: 00:00:00.000151 main     Log opened 2025-07-26T22:28:53.139624000Z
2025-07-26 22:28:55 (47748): Guest Log: 00:00:00.000263 main     OS Product: Linux
2025-07-26 22:28:55 (47748): Guest Log: 00:00:00.000287 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-07-26 22:28:55 (47748): Guest Log: 00:00:00.000308 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-07-26 22:28:55 (47748): Guest Log: 00:00:00.000327 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-07-26 22:28:55 (47748): Guest Log: 00:00:00.000327 main     Process ID: 1246
2025-07-26 22:28:55 (47748): Guest Log: 00:00:00.000328 main     Package type: LINUX_64BITS_GENERIC
2025-07-26 22:28:55 (47748): Guest Log: 00:00:00.001377 main     5.2.32 r132073 started. Verbose level = 0
2025-07-26 22:28:55 (47748): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-07-26 22:28:55 (47748): Guest Log: [INFO] Mounting shared directory
2025-07-26 22:28:55 (47748): Guest Log: [INFO] Checking for init_data.xml
2025-07-26 22:28:57 (47748): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-07-26 22:28:57 (47748): Guest Log: [INFO] Detected branch: prod
2025-07-26 22:28:57 (47748): Guest Log: This is the prod version of the ATLAS job wrapper
2025-07-26 22:28:57 (47748): Guest Log: Copying input files
2025-07-26 22:28:58 (47748): Guest Log: Copied input files into RunAtlas.
2025-07-26 22:28:58 (47748): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-07-26 22:29:04 (47748): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-07-26 22:29:04 (47748): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-07-26 22:29:04 (47748): Guest Log: 2.6.3.0 1515 0 29532 148788 4 1 3117619 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-07-26 22:29:05 (47748): Guest Log: 00:00:10.014072 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 982 184 000ns (GuestNow=1 753 561 744 170 171 000 ns GuestLast=1 753 568 933 152 355 000 ns fSetTimeLastLoop=true )
2025-07-26 22:29:05 (47748): Guest Log: copied the webapp to /var/www
2025-07-26 22:29:05 (47748): Guest Log: core_number=1
2025-07-26 22:29:05 (47748): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-07-26 22:29:05 (47748): Guest Log:  *** Starting ATLAS job. (PandaID=6745135631 taskID=45743349) ***
2025-07-27 00:08:44 (47748): Status Report: Elapsed Time: '6000.000000'
2025-07-27 00:08:44 (47748): Status Report: CPU Time: '5778.687500'
2025-07-27 01:48:47 (47748): Status Report: Elapsed Time: '12000.000000'
2025-07-27 01:48:47 (47748): Status Report: CPU Time: '11752.250000'
2025-07-27 03:28:50 (47748): Status Report: Elapsed Time: '18000.000000'
2025-07-27 03:28:50 (47748): Status Report: CPU Time: '17727.343750'
2025-07-27 05:08:53 (47748): Status Report: Elapsed Time: '24000.000000'
2025-07-27 05:08:53 (47748): Status Report: CPU Time: '23702.265625'
2025-07-27 06:32:06 (47748): Guest Log:  *** Job finished ***
2025-07-27 06:32:06 (47748): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:42,529 | INFO     | all workflow threads have been joined
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:42,530 | INFO     | end of generic workflow (traces error code: 0)
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:42,530 | INFO     | traces error code: 0
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:42,530 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,735 | INFO     | PID=5774 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,736 | INFO     | found 0 job(s) in 20 queues
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,736 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,736 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,736 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,736 | INFO     | [monitor] control thread has ended
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,838 [wrapper] ==== pilot stdout END ====
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,840 [wrapper] ==== wrapper stdout RESUME ====
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,841 [wrapper] pilotpid: 5774
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,844 [wrapper] Pilot exit status: 0
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,879 [wrapper] pandaids: 6745135631
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,891 [wrapper] cleanup supervisor_pilot  5392 5775
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,893 [wrapper] Test setup, not cleaning
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,895 [wrapper] apfmon messages muted
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,896 [wrapper] ==== wrapper stdout END ====
2025-07-27 06:32:06 (47748): Guest Log: 2025-07-27 04:31:54,897 [wrapper] ==== wrapper stderr END ====
2025-07-27 06:32:06 (47748): Guest Log:  *** Error codes and diagnostics ***
2025-07-27 06:32:06 (47748): Guest Log:     "exeErrorCode": 0,
2025-07-27 06:32:06 (47748): Guest Log:     "exeErrorDiag": "",
2025-07-27 06:32:06 (47748): Guest Log:     "pilotErrorCode": 0,
2025-07-27 06:32:06 (47748): Guest Log:     "pilotErrorDiag": "",
2025-07-27 06:32:06 (47748): Guest Log:  *** Listing of results directory ***
2025-07-27 06:32:06 (47748): Guest Log: total 211752
2025-07-27 06:32:06 (47748): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jul 26 11:38 queuedata.json
2025-07-27 06:32:06 (47748): Guest Log: -rwx------. 1 atlas atlas     36292 Jul 26 11:39 runpilot2-wrapper.sh
2025-07-27 06:32:06 (47748): Guest Log: -rw-r--r--. 1 atlas atlas    530466 Jul 26 11:39 pilot3.tar.gz
2025-07-27 06:32:06 (47748): Guest Log: -rwxr-xr-x. 1 atlas atlas      9452 Jul 26 20:28 init_data.xml
2025-07-27 06:32:06 (47748): Guest Log: -rwxr-xr-x. 1 atlas atlas    542891 Jul 26 20:28 input.tar.gz
2025-07-27 06:32:06 (47748): Guest Log: -rwxr-xr-x. 1 atlas atlas     15095 Jul 26 20:28 start_atlas.sh
2025-07-27 06:32:06 (47748): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jul 26 20:28 EVNT.45743347._002126.pool.root.1 -> /data/./ATLAS.root_0
2025-07-27 06:32:06 (47748): Guest Log: -rw-r--r--. 1 atlas atlas      2563 Jul 26 20:29 pandaJob.out
2025-07-27 06:32:06 (47748): Guest Log: -rw-------. 1 atlas atlas    980125 Jul 26 20:29 agis_schedconf.cvmfs.json
2025-07-27 06:32:06 (47748): Guest Log: drwx------. 4 atlas atlas      4096 Jul 26 20:29 pilot3
2025-07-27 06:32:06 (47748): Guest Log: -rw-------. 1 atlas atlas 206725769 Jul 27 04:30 HITS.45743349._037216.pool.root.1
2025-07-27 06:32:06 (47748): Guest Log: -rw-------. 1 atlas atlas      1023 Jul 27 04:31 memory_monitor_summary.json
2025-07-27 06:32:06 (47748): Guest Log: -rw-------. 1 atlas atlas   1593052 Jul 27 04:31 agis_ddmendpoints.agis.ALL.json
2025-07-27 06:32:06 (47748): Guest Log: -rw-------. 1 atlas atlas    438729 Jul 27 04:31 log.45743349._037216.job.log.tgz.1
2025-07-27 06:32:06 (47748): Guest Log: -rw-------. 1 atlas atlas      7774 Jul 27 04:31 heartbeat.json
2025-07-27 06:32:06 (47748): Guest Log: -rw-------. 1 atlas atlas        95 Jul 27 04:31 pilot_heartbeat.json
2025-07-27 06:32:06 (47748): Guest Log: -rw-------. 1 atlas atlas       744 Jul 27 04:31 pilotlog.txt
2025-07-27 06:32:06 (47748): Guest Log: -rw-------. 1 atlas atlas   2709636 Jul 27 04:31 log.45743349._037216.job.log.1
2025-07-27 06:32:06 (47748): Guest Log: -rw-------. 1 atlas atlas       357 Jul 27 04:31 output.list
2025-07-27 06:32:06 (47748): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jul 27 04:31 runtime_log
2025-07-27 06:32:06 (47748): Guest Log: -rw-------. 1 atlas atlas   3164160 Jul 27 04:31 result.tar.gz
2025-07-27 06:32:06 (47748): Guest Log: -rw-r--r--. 1 atlas atlas      8466 Jul 27 04:31 runtime_log.err
2025-07-27 06:32:06 (47748): Guest Log: -rw-------. 1 atlas atlas       657 Jul 27 04:31 dxVMDmnQsz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmy0RLDmFDSAWn.diag
2025-07-27 06:32:06 (47748): Guest Log: Looking for outputfile HITS.45743349._037216.pool.root.1
2025-07-27 06:32:06 (47748): Guest Log: HITS file was successfully produced
2025-07-27 06:32:06 (47748): Guest Log: -rw-------. 1 atlas atlas 206725769 Jul 27 04:30 /home/atlas/RunAtlas/HITS.45743349._037216.pool.root.1
2025-07-27 06:32:07 (47748): Guest Log: Successfully finished the ATLAS job!
2025-07-27 06:32:07 (47748): Guest Log: Copying the results back to the shared directory!
2025-07-27 06:32:07 (47748): Guest Log:  *** Contents of shared directory: ***
2025-07-27 06:32:07 (47748): Guest Log: total 430456
2025-07-27 06:32:07 (47748): Guest Log: -rwxrwxrwx. 1 root root 230314321 Jul 26 20:28 ATLAS.root_0
2025-07-27 06:32:07 (47748): Guest Log: -rwxrwxrwx. 1 root root 206725769 Jul 27  2025 HITS.pool.root.1
2025-07-27 06:32:07 (47748): Guest Log: -rwxrwxrwx. 1 root root      9452 Jul 26 20:28 init_data.xml
2025-07-27 06:32:07 (47748): Guest Log: -rwxrwxrwx. 1 root root    542891 Jul 26 20:27 input.tar.gz
2025-07-27 06:32:07 (47748): Guest Log: -rwxrwxrwx. 1 root root   3164160 Jul 27  2025 result.tar.gz
2025-07-27 06:32:07 (47748): Guest Log: -rwxrwxrwx. 1 root root     15095 Jul 26 20:27 start_atlas.sh
2025-07-27 06:32:07 (47748): Guest Log:  *** Success! Shutting down the machine. ***
2025-07-27 06:32:07 (47748): VM Completion File Detected.
2025-07-27 06:32:07 (47748): Powering off VM.
2025-07-27 06:32:07 (47748): Successfully stopped VM.
2025-07-27 06:32:07 (47748): Deregistering VM. (boinc_d86b27212a65a202, slot#36)
2025-07-27 06:32:07 (47748): Removing network bandwidth throttle group from VM.
2025-07-27 06:32:08 (47748): Removing VM from VirtualBox.
06:32:13 (47748): called boinc_finish(0)

</stderr_txt>
]]>

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