Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:36:48 (38561): wrapper (7.7.26015): starting
16:36:48 (38561): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 16:36:48] Arguments: --nthreads 8
[2025-07-26 16:36:48] Threads: 8
[2025-07-26 16:36:48] Checking for CVMFS
[2025-07-26 16:36:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 16:36:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 16:36:48] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 16:36:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 16:36:49] 2.11.2.0 39542 212567 374692 148788 3 59 13943578 18432000 3665 130560 0 175707188 99.344 268800372 40342 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 16:36:49] CVMFS is ok
[2025-07-26 16:36:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 16:36:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 16:36:49] Further information can be found at the LHC@home message board.
[2025-07-26 16:36:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 16:36:49] Checking for apptainer binary...
[2025-07-26 16:36:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 16:36:49] Running /usr/bin/apptainer --version
[2025-07-26 16:36:49] apptainer version 1.3.2-1.el7
[2025-07-26 16:36:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 16:36:49] c-211-25.aglt2.org
[2025-07-26 16:36:49] apptainer works
[2025-07-26 16:36:49] Set ATHENA_PROC_NUMBER=8
[2025-07-26 16:36:49] Set ATHENA_CORE_NUMBER=8
[2025-07-26 16:36:49] Starting ATLAS job with PandaID=6744980208
[2025-07-26 16:36:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 19:49:17]  *** The last 200 lines of the pilot log: ***
[2025-07-26 19:49:17] 2025-07-26 23:48:41,345 | INFO     | executing command: lscpu
[2025-07-26 19:49:17] 2025-07-26 23:48:41,381 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 19:49:17] 2025-07-26 23:48:42,717 | INFO     | monitor loop #822: job 0:6744980208 is in state 'finished'
[2025-07-26 19:49:17] 2025-07-26 23:48:42,717 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 19:49:17] 2025-07-26 23:48:44,966 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-26 19:49:17] 2025-07-26 23:48:44,972 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.9435000000003
[2025-07-26 19:49:17] 2025-07-26 23:48:44,976 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6744980208/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 19:49:17] 2025-07-26 23:48:44,977 | INFO     | extracted standard info from prmon json
[2025-07-26 19:49:17] 2025-07-26 23:48:44,977 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 19:49:17] 2025-07-26 23:48:44,977 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 19:49:17] 2025-07-26 23:48:44,977 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 19:49:17] 2025-07-26 23:48:44,977 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 19:49:17] 2025-07-26 23:48:44,980 | INFO     | fitting pss+swap vs Time
[2025-07-26 19:49:17] 2025-07-26 23:48:44,980 | INFO     | sum of square deviations: 2060343747.0
[2025-07-26 19:49:17] 2025-07-26 23:48:44,981 | INFO     | sum of deviations: 16042617377.499996
[2025-07-26 19:49:17] 2025-07-26 23:48:44,981 | INFO     | mean x: 1753567948.5
[2025-07-26 19:49:17] 2025-07-26 23:48:44,981 | INFO     | mean y: 2498016.409574468
[2025-07-26 19:49:17] 2025-07-26 23:48:44,981 | INFO     | -- intersect: -13651446712.082916
[2025-07-26 19:49:17] 2025-07-26 23:48:44,981 | INFO     | intersect: -13651446712.082916
[2025-07-26 19:49:17] 2025-07-26 23:48:44,982 | INFO     | chi2: 1.335833028088792
[2025-07-26 19:49:17] 2025-07-26 23:48:44,982 | INFO     | sum of square deviations: 1900284932.0
[2025-07-26 19:49:17] 2025-07-26 23:48:44,983 | INFO     | sum of deviations: 15526959031.999987
[2025-07-26 19:49:17] 2025-07-26 23:48:44,983 | INFO     | mean x: 1753567796.0
[2025-07-26 19:49:17] 2025-07-26 23:48:44,983 | INFO     | mean y: 2497524.989071038
[2025-07-26 19:49:17] 2025-07-26 23:48:44,983 | INFO     | -- intersect: -14325656569.076286
[2025-07-26 19:49:17] 2025-07-26 23:48:44,983 | INFO     | intersect: -14325656569.076286
[2025-07-26 19:49:17] 2025-07-26 23:48:44,983 | INFO     | chi2: 1.3367232977362782
[2025-07-26 19:49:17] 2025-07-26 23:48:44,984 | INFO     | current chi2=1.3367232977362782 (change=-0.06664527892081727 %)
[2025-07-26 19:49:17] 2025-07-26 23:48:44,984 | INFO     | right removable region: 182
[2025-07-26 19:49:17] 2025-07-26 23:48:44,984 | INFO     | sum of square deviations: 1900284932.0
[2025-07-26 19:49:17] 2025-07-26 23:48:44,985 | INFO     | sum of deviations: -9445762648.000008
[2025-07-26 19:49:17] 2025-07-26 23:48:44,985 | INFO     | mean x: 1753568101.0
[2025-07-26 19:49:17] 2025-07-26 23:48:44,985 | INFO     | mean y: 2521990.4098360655
[2025-07-26 19:49:17] 2025-07-26 23:48:44,985 | INFO     | -- intersect: 8718998025.252228
[2025-07-26 19:49:17] 2025-07-26 23:48:44,985 | INFO     | intersect: 8718998025.252228
[2025-07-26 19:49:17] 2025-07-26 23:48:44,985 | INFO     | chi2: 0.05608258419899277
[2025-07-26 19:49:17] 2025-07-26 23:48:44,985 | INFO     | current chi2=0.05608258419899277 (change=95.80167707941528 %)
[2025-07-26 19:49:17] 2025-07-26 23:48:44,986 | INFO     | sum of square deviations: 1748737904.5
[2025-07-26 19:49:17] 2025-07-26 23:48:44,986 | INFO     | sum of deviations: -10141918986.999998
[2025-07-26 19:49:17] 2025-07-26 23:48:44,987 | INFO     | mean x: 1753568253.5
[2025-07-26 19:49:17] 2025-07-26 23:48:44,987 | INFO     | mean y: 2522651.5056179776
[2025-07-26 19:49:17] 2025-07-26 23:48:44,987 | INFO     | -- intersect: 10172455561.067066
[2025-07-26 19:49:17] 2025-07-26 23:48:44,987 | INFO     | intersect: 10172455561.067066
[2025-07-26 19:49:17] 2025-07-26 23:48:44,987 | INFO     | chi2: 0.04315123512016463
[2025-07-26 19:49:17] 2025-07-26 23:48:44,987 | INFO     | current chi2=0.04315123512016463 (change=23.05769119508652 %)
[2025-07-26 19:49:17] 2025-07-26 23:48:44,987 | INFO     | left removable region: 20
[2025-07-26 19:49:17] 2025-07-26 23:48:44,987 | INFO     | sum of square deviations: 1318277740.5
[2025-07-26 19:49:17] 2025-07-26 23:48:44,988 | INFO     | sum of deviations: -5766488264.5
[2025-07-26 19:49:17] 2025-07-26 23:48:44,988 | INFO     | mean x: 1753568375.5
[2025-07-26 19:49:17] 2025-07-26 23:48:44,988 | INFO     | mean y: 2517965.9814814813
[2025-07-26 19:49:17] 2025-07-26 23:48:44,988 | INFO     | -- intersect: 7673080206.138702
[2025-07-26 19:49:17] 2025-07-26 23:48:44,989 | INFO     | intersect: 7673080206.138702
[2025-07-26 19:49:17] 2025-07-26 23:48:44,989 | INFO     | chi2: 0.037858038859080206
[2025-07-26 19:49:17] 2025-07-26 23:48:44,989 | INFO     | -- intersect: 7673080206.138702
[2025-07-26 19:49:17] 2025-07-26 23:48:44,989 | INFO     | current memory leak: -4.37 B/s (using 162 data points, chi2=0.04)
[2025-07-26 19:49:17] 2025-07-26 23:48:44,989 | INFO     | could have reported an average CPU frequency of 2899 MHz (10 samples)
[2025-07-26 19:49:17] 2025-07-26 23:48:44,989 | INFO     | ..............................
[2025-07-26 19:49:17] 2025-07-26 23:48:44,990 | INFO     | . Timing measurements:
[2025-07-26 19:49:17] 2025-07-26 23:48:44,990 | INFO     | . get job = 0 s
[2025-07-26 19:49:17] 2025-07-26 23:48:44,990 | INFO     | . initial setup = 2 s
[2025-07-26 19:49:17] 2025-07-26 23:48:44,990 | INFO     | . payload setup = 5 s
[2025-07-26 19:49:17] 2025-07-26 23:48:44,990 | INFO     | . stage-in = 0 s
[2025-07-26 19:49:17] 2025-07-26 23:48:44,990 | INFO     | . payload execution = 11470 s
[2025-07-26 19:49:17] 2025-07-26 23:48:44,990 | INFO     | . stage-out = 2 s
[2025-07-26 19:49:17] 2025-07-26 23:48:44,990 | INFO     | . log creation = 0 s
[2025-07-26 19:49:17] 2025-07-26 23:48:44,990 | INFO     | ..............................
[2025-07-26 19:49:17] 2025-07-26 23:48:45,080 | INFO     | 
[2025-07-26 19:49:17] 2025-07-26 23:48:45,080 | INFO     | job summary report
[2025-07-26 19:49:17] 2025-07-26 23:48:45,080 | INFO     | --------------------------------------------------
[2025-07-26 19:49:17] 2025-07-26 23:48:45,080 | INFO     | PanDA job id: 6744980208
[2025-07-26 19:49:17] 2025-07-26 23:48:45,081 | INFO     | task id: 45743349
[2025-07-26 19:49:17] 2025-07-26 23:48:45,081 | INFO     | errors: (none)
[2025-07-26 19:49:17] 2025-07-26 23:48:45,081 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 19:49:17] 2025-07-26 23:48:45,081 | INFO     | pilot state: finished 
[2025-07-26 19:49:17] 2025-07-26 23:48:45,081 | INFO     | transexitcode: 0
[2025-07-26 19:49:17] 2025-07-26 23:48:45,081 | INFO     | exeerrorcode: 0
[2025-07-26 19:49:17] 2025-07-26 23:48:45,081 | INFO     | exeerrordiag: 
[2025-07-26 19:49:17] 2025-07-26 23:48:45,081 | INFO     | exitcode: 0
[2025-07-26 19:49:17] 2025-07-26 23:48:45,081 | INFO     | exitmsg: OK
[2025-07-26 19:49:17] 2025-07-26 23:48:45,081 | INFO     | cpuconsumptiontime: 87314 s
[2025-07-26 19:49:17] 2025-07-26 23:48:45,081 | INFO     | nevents: 400
[2025-07-26 19:49:17] 2025-07-26 23:48:45,081 | INFO     | neventsw: 0
[2025-07-26 19:49:17] 2025-07-26 23:48:45,082 | INFO     | pid: 48691
[2025-07-26 19:49:17] 2025-07-26 23:48:45,082 | INFO     | pgrp: 48691
[2025-07-26 19:49:17] 2025-07-26 23:48:45,082 | INFO     | corecount: 8
[2025-07-26 19:49:17] 2025-07-26 23:48:45,082 | INFO     | event service: False
[2025-07-26 19:49:17] 2025-07-26 23:48:45,082 | INFO     | sizes: {0: 2396645, 1: 2397501, 5: 2397763, 12: 2397819, 11480: 2427021, 11484: 2436019, 11485: 2436203, 11490: 2436397}
[2025-07-26 19:49:17] 2025-07-26 23:48:45,082 | INFO     | --------------------------------------------------
[2025-07-26 19:49:17] 2025-07-26 23:48:45,082 | INFO     | 
[2025-07-26 19:49:17] 2025-07-26 23:48:45,082 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-07-26 19:49:17] 2025-07-26 23:48:45,103 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,103 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,103 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,103 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,103 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,103 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,104 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,104 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,104 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,104 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,104 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,104 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,104 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,104 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,104 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,104 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,105 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,105 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 19:49:17] 2025-07-26 23:48:45,105 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,105 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 19:49:17] 2025-07-26 23:48:45,105 | INFO     | job 6744980208 has completed (purged errors)
[2025-07-26 19:49:17] 2025-07-26 23:48:45,105 | INFO     | overall cleanup function is called
[2025-07-26 19:49:17] 2025-07-26 23:48:46,113 | INFO     | --- collectZombieJob: --- 10, [48691]
[2025-07-26 19:49:17] 2025-07-26 23:48:46,114 | INFO     | zombie collector waiting for pid 48691
[2025-07-26 19:49:17] 2025-07-26 23:48:46,114 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 19:49:17] 2025-07-26 23:48:46,114 | INFO     | collected zombie processes
[2025-07-26 19:49:17] 2025-07-26 23:48:46,114 | INFO     | will attempt to kill all subprocesses of pid=48691
[2025-07-26 19:49:17] 2025-07-26 23:48:46,355 | INFO     | process IDs to be killed: [48691] (in reverse order)
[2025-07-26 19:49:17] 2025-07-26 23:48:46,431 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 19:49:17] 2025-07-26 23:48:46,431 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 19:49:17] 2025-07-26 23:48:46,440 | INFO     | did not find any defunct processes belonging to 48691
[2025-07-26 19:49:17] 2025-07-26 23:48:46,447 | INFO     | did not find any defunct processes belonging to 48691
[2025-07-26 19:49:17] 2025-07-26 23:48:46,447 | INFO     | ready for new job
[2025-07-26 19:49:17] 2025-07-26 23:48:46,447 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 19:49:17] 2025-07-26 23:48:46,449 | INFO     | ***************************************
[2025-07-26 19:49:17] 2025-07-26 23:48:46,449 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 19:49:17] 2025-07-26 23:48:46,450 | INFO     | ***************************************
[2025-07-26 19:49:17] 2025-07-26 23:48:46,450 | INFO     | 
[2025-07-26 19:49:17] 2025-07-26 23:48:46,452 | INFO     | architecture information:
[2025-07-26 19:49:17] 2025-07-26 23:48:46,452 | INFO     | executing command: cat /etc/os-release
[2025-07-26 19:49:17] 2025-07-26 23:48:46,477 | INFO     | cat /etc/os-release:
[2025-07-26 19:49:17] NAME="CentOS Linux"
[2025-07-26 19:49:17] VERSION="7 (Core)"
[2025-07-26 19:49:17] ID="centos"
[2025-07-26 19:49:17] ID_LIKE="rhel fedora"
[2025-07-26 19:49:17] VERSION_ID="7"
[2025-07-26 19:49:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 19:49:17] ANSI_COLOR="0;31"
[2025-07-26 19:49:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 19:49:17] HOME_URL="https://www.centos.org/"
[2025-07-26 19:49:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 19:49:17] 
[2025-07-26 19:49:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 19:49:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 19:49:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 19:49:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 19:49:17] 
[2025-07-26 19:49:17] 2025-07-26 23:48:46,478 | INFO     | ***************************************
[2025-07-26 19:49:17] 2025-07-26 23:48:46,982 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-07-26 19:49:17] 2025-07-26 23:48:47,009 | INFO     | sufficient remaining disk space (55731814400 B)
[2025-07-26 19:49:17] 2025-07-26 23:48:47,010 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 19:49:17] 2025-07-26 23:48:47,010 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 19:49:17] 2025-07-26 23:48:47,010 | INFO     | update_server=False
[2025-07-26 19:49:17] 2025-07-26 23:48:47,010 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 19:49:17] 2025-07-26 23:48:47,011 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 19:49:17] 2025-07-26 23:48:47,011 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 19:49:17] 2025-07-26 23:48:47,011 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 19:49:17] 2025-07-26 23:48:47,012 | INFO     | aborting loop
[2025-07-26 19:49:17] 2025-07-26 23:48:47,012 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 19:49:17] 2025-07-26 23:48:47,367 | INFO     | all payload control threads have been joined
[2025-07-26 19:49:17] 2025-07-26 23:48:47,471 | INFO     | all job control threads have been joined
[2025-07-26 19:49:17] 2025-07-26 23:48:47,565 | INFO     | all data control threads have been joined
[2025-07-26 19:49:17] 2025-07-26 23:48:48,016 | INFO     | [job] retrieve thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:48,017 | INFO     | [job] queue monitor thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:48,017 | INFO     | [job] job monitor thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:48,295 | INFO     | [job] validate thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:48,313 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:48,317 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:48,374 | INFO     | [payload] control thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:48,478 | INFO     | [job] control thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:48,556 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:48,571 | INFO     | [data] control thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:48,581 | INFO     | [payload] validate_post thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:48,822 | INFO     | [payload] failed_post thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:48,966 | INFO     | [data] copytool_in thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:49,021 | INFO     | [data] copytool_out thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:49,149 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:51,017 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 19:49:17] 2025-07-26 23:48:53,064 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140618618419008)>', '<ExcThread(monitor, started 140617950680832)>']
[2025-07-26 19:49:17] 2025-07-26 23:48:58,089 | INFO     | all workflow threads have been joined
[2025-07-26 19:49:17] 2025-07-26 23:48:58,090 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 19:49:17] 2025-07-26 23:48:58,090 | INFO     | traces error code: 0
[2025-07-26 19:49:17] 2025-07-26 23:48:58,090 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 19:49:17] 2025-07-26 23:49:17,400 | INFO     | PID=42186 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 19:49:17] 2025-07-26 23:49:17,401 | INFO     | .. there are 5 such processes running
[2025-07-26 19:49:17] 2025-07-26 23:49:17,401 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 19:49:17] 2025-07-26 23:49:17,401 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 19:49:17] 2025-07-26 23:49:17,401 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 19:49:17] 2025-07-26 23:49:17,401 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 19:49:17] 2025-07-26 23:49:17,401 | INFO     | [monitor] control thread has ended
[2025-07-26 19:49:17] 2025-07-26 23:49:17,480 [wrapper] ==== pilot stdout END ====
[2025-07-26 19:49:17] 2025-07-26 23:49:17,483 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 19:49:17] 2025-07-26 23:49:17,485 [wrapper] pilotpid: 42186
[2025-07-26 19:49:17] 2025-07-26 23:49:17,488 [wrapper] Pilot exit status: 0
[2025-07-26 19:49:17] 2025-07-26 23:49:17,503 [wrapper] pandaids: 6744980208
[2025-07-26 19:49:17] 2025-07-26 23:49:17,537 [wrapper] cleanup supervisor_pilot 15913 42187
[2025-07-26 19:49:17] 2025-07-26 23:49:17,540 [wrapper] Test setup, not cleaning
[2025-07-26 19:49:17] 2025-07-26 23:49:17,543 [wrapper] apfmon messages muted
[2025-07-26 19:49:17] 2025-07-26 23:49:17,545 [wrapper] ==== wrapper stdout END ====
[2025-07-26 19:49:17] 2025-07-26 23:49:17,547 [wrapper] ==== wrapper stderr END ====
[2025-07-26 19:49:17]  *** Error codes and diagnostics ***
[2025-07-26 19:49:17]     "exeErrorCode": 0,
[2025-07-26 19:49:17]     "exeErrorDiag": "",
[2025-07-26 19:49:17]     "pilotErrorCode": 0,
[2025-07-26 19:49:17]     "pilotErrorDiag": "",
[2025-07-26 19:49:17]  *** Listing of results directory ***
[2025-07-26 19:49:17] total 351288
[2025-07-26 19:49:17] -rw-r--r-- 1 boincer umatlas    550332 Jun 18 11:33 pilot3.tar.gz
[2025-07-26 19:49:17] -rw-r--r-- 1 boincer umatlas      5112 Jul 25 06:09 queuedata.json
[2025-07-26 19:49:17] -rwx------ 1 boincer umatlas     36292 Jul 25 06:11 runpilot2-wrapper.sh
[2025-07-26 19:49:17] -rw-r--r-- 1 boincer umatlas       100 Jul 26 16:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 19:49:17] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 16:36 run_atlas
[2025-07-26 19:49:17] -rw-r--r-- 1 boincer umatlas       105 Jul 26 16:36 job.xml
[2025-07-26 19:49:17] -rw-r--r-- 2 boincer umatlas 142693477 Jul 26 16:36 EVNT.45743347._001027.pool.root.1
[2025-07-26 19:49:17] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 16:36 start_atlas.sh
[2025-07-26 19:49:17] drwxrwx--x 2 boincer umatlas      4096 Jul 26 16:36 shared
[2025-07-26 19:49:17] -rw-r--r-- 2 boincer umatlas    564561 Jul 26 16:36 input.tar.gz
[2025-07-26 19:49:17] -rw-r--r-- 1 boincer umatlas         0 Jul 26 16:36 boinc_lockfile
[2025-07-26 19:49:17] -rw-r--r-- 1 boincer umatlas      2562 Jul 26 16:36 pandaJob.out
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas    980125 Jul 26 16:36 agis_schedconf.cvmfs.json
[2025-07-26 19:49:17] drwx------ 6 boincer umatlas      4096 Jul 26 16:37 pilot3
[2025-07-26 19:49:17] -rw-r--r-- 1 boincer umatlas      6035 Jul 26 19:36 init_data.xml
[2025-07-26 19:49:17] -rw-r--r-- 1 boincer umatlas       530 Jul 26 19:47 boinc_task_state.xml
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas 210255334 Jul 26 19:47 HITS.45743349._019645.pool.root.1
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas      1052 Jul 26 19:48 memory_monitor_summary.json
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas   1593052 Jul 26 19:48 agis_ddmendpoints.agis.ALL.json
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas    376355 Jul 26 19:48 log.45743349._019645.job.log.tgz.1
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas        95 Jul 26 19:48 pilot_heartbeat.json
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas      7837 Jul 26 19:48 heartbeat.json
[2025-07-26 19:49:17] -rw-r--r-- 1 boincer umatlas      8192 Jul 26 19:49 boinc_mmap_file
[2025-07-26 19:49:17] -rw-r--r-- 1 boincer umatlas        28 Jul 26 19:49 wrapper_checkpoint.txt
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas       820 Jul 26 19:49 pilotlog.txt
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas   1049826 Jul 26 19:49 log.45743349._019645.job.log.1
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas       357 Jul 26 19:49 output.list
[2025-07-26 19:49:17] -rw-r--r-- 1 boincer umatlas       620 Jul 26 19:49 runtime_log
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas   1443840 Jul 26 19:49 result.tar.gz
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas       661 Jul 26 19:49 RZ1KDmMaUz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmyGPLDmh7cstn.diag
[2025-07-26 19:49:17] -rw-r--r-- 1 boincer umatlas      8661 Jul 26 19:49 runtime_log.err
[2025-07-26 19:49:17] -rw-r--r-- 1 boincer umatlas     21221 Jul 26 19:49 stderr.txt
[2025-07-26 19:49:17] HITS file was successfully produced:
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas 210255334 Jul 26 19:47 shared/HITS.pool.root.1
[2025-07-26 19:49:17]  *** Contents of shared directory: ***
[2025-07-26 19:49:17] total 346668
[2025-07-26 19:49:17] -rw-r--r-- 2 boincer umatlas 142693477 Jul 26 16:36 ATLAS.root_0
[2025-07-26 19:49:17] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 16:36 start_atlas.sh
[2025-07-26 19:49:17] -rw-r--r-- 2 boincer umatlas    564561 Jul 26 16:36 input.tar.gz
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas 210255334 Jul 26 19:47 HITS.pool.root.1
[2025-07-26 19:49:17] -rw------- 1 boincer umatlas   1443840 Jul 26 19:49 result.tar.gz
19:49:19 (38561): run_atlas exited; CPU time 87542.061370
19:49:19 (38561): called boinc_finish(0)

</stderr_txt>
]]>

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