Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:20:04 (3474839): wrapper (7.7.26015): starting
16:20:04 (3474839): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 16:20:04] Arguments: --nthreads 8
[2025-07-26 16:20:04] Threads: 8
[2025-07-26 16:20:04] Checking for CVMFS
[2025-07-26 16:20:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 16:20:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 16:20:04] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 16:20:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 16:20:04] 2.13.0.0 97728 26265 306700 148788 0 309 22505886 32935936 25710 16776704 2 245796055 99.595 298150483 18380 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 16:20:04] CVMFS is ok
[2025-07-26 16:20:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 16:20:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 16:20:04] Further information can be found at the LHC@home message board.
[2025-07-26 16:20:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 16:20:04] Checking for apptainer binary...
[2025-07-26 16:20:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 16:20:04] Running /usr/bin/apptainer --version
[2025-07-26 16:20:04] apptainer version 1.4.1-1.el9
[2025-07-26 16:20:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 16:20:05] c7-2-37.aglt2.org
[2025-07-26 16:20:05] apptainer works
[2025-07-26 16:20:05] Set ATHENA_PROC_NUMBER=8
[2025-07-26 16:20:05] Set ATHENA_CORE_NUMBER=8
[2025-07-26 16:20:05] Starting ATLAS job with PandaID=6745229818
[2025-07-26 16:20:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 17:58:57]  *** The last 200 lines of the pilot log: ***
[2025-07-26 17:58:57]  workdir=None
[2025-07-26 17:58:57] ]
[2025-07-26 17:58:57] 2025-07-26 21:58:07,143 | INFO     | monitor loop #383: job 0:6745229818 is in state 'stageout'
[2025-07-26 17:58:57] 2025-07-26 21:58:07,143 | WARNING  | aborting job monitor tasks since payload process 3512025 is not running
[2025-07-26 17:58:57] 2025-07-26 21:58:07,163 | INFO     | transferring file log.45743349._039726.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6745229818/log.45743349._039726.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 17:58:57] 2025-07-26 21:58:07,163 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6745229818/log.45743349._039726.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._039726.job
[2025-07-26 17:58:57] 2025-07-26 21:58:07,244 | INFO     | adding to output.list: log.45743349._039726.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ac/55/log.45743349._039726.job.log.tg
[2025-07-26 17:58:57] 2025-07-26 21:58:07,245 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 17:58:57] 2025-07-26 21:58:07,245 | INFO     | summary of transferred files:
[2025-07-26 17:58:57] 2025-07-26 21:58:07,245 | INFO     |  -- lfn=log.45743349._039726.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 17:58:57] 2025-07-26 21:58:07,245 | INFO     | stage-out finished correctly
[2025-07-26 17:58:57] 2025-07-26 21:58:08,055 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 17:58:57] 2025-07-26 21:58:09,650 | INFO     | monitor loop #384: job 0:6745229818 is in state 'finished'
[2025-07-26 17:58:57] 2025-07-26 21:58:09,650 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:58:57] 2025-07-26 21:58:10,896 | INFO     | job 6745229818 has state=finished
[2025-07-26 17:58:57] 2025-07-26 21:58:10,896 | INFO     | preparing for final server update for job 6745229818 in state='finished'
[2025-07-26 17:58:57] 2025-07-26 21:58:11,050 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-26 17:58:57] 2025-07-26 21:58:11,050 | INFO     | this job has now completed (state=finished)
[2025-07-26 17:58:57] 2025-07-26 21:58:11,050 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 17:58:57] 2025-07-26 21:58:11,050 | INFO     | log transfer has been attempted: DONE
[2025-07-26 17:58:57] 2025-07-26 21:58:11,050 | INFO     | job 6745229818 has finished - writing final server update
[2025-07-26 17:58:57] 2025-07-26 21:58:11,050 | INFO     | total number of processed events: 400 (read)
[2025-07-26 17:58:57] 2025-07-26 21:58:11,052 | INFO     | executing command: lscpu
[2025-07-26 17:58:57] 2025-07-26 21:58:11,211 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 17:58:57] 2025-07-26 21:58:11,732 | INFO     | PID=3484549 has CPU usage=13.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-26 17:58:57] 2025-07-26 21:58:11,732 | INFO     | .. there are 39 such processes running
[2025-07-26 17:58:57] 2025-07-26 21:58:12,158 | INFO     | monitor loop #385: job 0:6745229818 is in state 'finished'
[2025-07-26 17:58:57] 2025-07-26 21:58:12,158 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:58:57] 2025-07-26 21:58:14,665 | INFO     | monitor loop #386: job 0:6745229818 is in state 'finished'
[2025-07-26 17:58:57] 2025-07-26 21:58:14,665 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:58:57] 2025-07-26 21:58:17,169 | INFO     | monitor loop #387: job 0:6745229818 is in state 'finished'
[2025-07-26 17:58:57] 2025-07-26 21:58:17,169 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:58:57] 2025-07-26 21:58:19,673 | INFO     | monitor loop #388: job 0:6745229818 is in state 'finished'
[2025-07-26 17:58:57] 2025-07-26 21:58:19,676 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:58:57] 2025-07-26 21:58:22,181 | INFO     | monitor loop #389: job 0:6745229818 is in state 'finished'
[2025-07-26 17:58:57] 2025-07-26 21:58:22,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:58:57] 2025-07-26 21:58:22,932 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 17:58:57] 2025-07-26 21:58:22,968 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3101.065958333334
[2025-07-26 17:58:57] 2025-07-26 21:58:23,001 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745229818/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 17:58:57] 2025-07-26 21:58:23,002 | INFO     | extracted standard info from prmon json
[2025-07-26 17:58:57] 2025-07-26 21:58:23,002 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 17:58:57] 2025-07-26 21:58:23,002 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 17:58:57] 2025-07-26 21:58:23,002 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 17:58:57] 2025-07-26 21:58:23,002 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 17:58:57] 2025-07-26 21:58:23,004 | INFO     | fitting pss+swap vs Time
[2025-07-26 17:58:57] 2025-07-26 21:58:23,004 | INFO     | sum of square deviations: 218566913.280899
[2025-07-26 17:58:57] 2025-07-26 21:58:23,004 | INFO     | sum of deviations: -9354766273.11236
[2025-07-26 17:58:57] 2025-07-26 21:58:23,004 | INFO     | mean x: 1753564245.0898876
[2025-07-26 17:58:57] 2025-07-26 21:58:23,004 | INFO     | mean y: 2272094.7640449437
[2025-07-26 17:58:57] 2025-07-26 21:58:23,004 | INFO     | -- intersect: 75055643217.86812
[2025-07-26 17:58:57] 2025-07-26 21:58:23,004 | INFO     | intersect: 75055643217.86812
[2025-07-26 17:58:57] 2025-07-26 21:58:23,005 | INFO     | chi2: 0.05693151376735682
[2025-07-26 17:58:57] 2025-07-26 21:58:23,005 | INFO     | -- intersect: 75055643217.86812
[2025-07-26 17:58:57] 2025-07-26 21:58:23,005 | INFO     | current memory leak: -42.80 B/s (using 89 data points, chi2=0.06)
[2025-07-26 17:58:57] 2025-07-26 21:58:23,005 | INFO     | could have reported an average CPU frequency of 3198 MHz (7 samples)
[2025-07-26 17:58:57] 2025-07-26 21:58:23,005 | INFO     | ..............................
[2025-07-26 17:58:57] 2025-07-26 21:58:23,005 | INFO     | . Timing measurements:
[2025-07-26 17:58:57] 2025-07-26 21:58:23,005 | INFO     | . get job = 0 s
[2025-07-26 17:58:57] 2025-07-26 21:58:23,005 | INFO     | . initial setup = 2 s
[2025-07-26 17:58:57] 2025-07-26 21:58:23,005 | INFO     | . payload setup = 11 s
[2025-07-26 17:58:57] 2025-07-26 21:58:23,006 | INFO     | . stage-in = 0 s
[2025-07-26 17:58:57] 2025-07-26 21:58:23,006 | INFO     | . payload execution = 5832 s
[2025-07-26 17:58:57] 2025-07-26 21:58:23,006 | INFO     | . stage-out = 0 s
[2025-07-26 17:58:57] 2025-07-26 21:58:23,006 | INFO     | . log creation = 0 s
[2025-07-26 17:58:57] 2025-07-26 21:58:23,006 | INFO     | ..............................
[2025-07-26 17:58:57] 2025-07-26 21:58:23,088 | INFO     | 
[2025-07-26 17:58:57] 2025-07-26 21:58:23,088 | INFO     | job summary report
[2025-07-26 17:58:57] 2025-07-26 21:58:23,088 | INFO     | --------------------------------------------------
[2025-07-26 17:58:57] 2025-07-26 21:58:23,088 | INFO     | PanDA job id: 6745229818
[2025-07-26 17:58:57] 2025-07-26 21:58:23,088 | INFO     | task id: 45743349
[2025-07-26 17:58:57] 2025-07-26 21:58:23,088 | INFO     | errors: (none)
[2025-07-26 17:58:57] 2025-07-26 21:58:23,088 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | pilot state: finished 
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | transexitcode: 0
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | exeerrorcode: 0
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | exeerrordiag: 
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | exitcode: 0
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | exitmsg: OK
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | cpuconsumptiontime: 36386 s
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | nevents: 400
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | neventsw: 0
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | pid: 3512025
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | pgrp: 3512025
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | corecount: 8
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | event service: False
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | sizes: {0: 2397248, 1: 2397503, 9: 2397765, 11: 2397793, 5847: 2424473, 5849: 2433471, 5850: 2433655, 5865: 2433849}
[2025-07-26 17:58:57] 2025-07-26 21:58:23,089 | INFO     | --------------------------------------------------
[2025-07-26 17:58:57] 2025-07-26 21:58:23,090 | INFO     | 
[2025-07-26 17:58:57] 2025-07-26 21:58:23,090 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-26 17:58:57] 2025-07-26 21:58:23,133 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,134 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,134 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,134 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,134 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,134 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,134 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,134 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,134 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,134 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,135 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,135 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,135 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,135 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,135 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,135 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,135 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,135 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 17:58:57] 2025-07-26 21:58:23,135 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,135 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 17:58:57] 2025-07-26 21:58:23,135 | INFO     | job 6745229818 has completed (purged errors)
[2025-07-26 17:58:57] 2025-07-26 21:58:23,135 | INFO     | overall cleanup function is called
[2025-07-26 17:58:57] 2025-07-26 21:58:24,147 | INFO     | --- collectZombieJob: --- 10, [3512025]
[2025-07-26 17:58:57] 2025-07-26 21:58:24,147 | INFO     | zombie collector waiting for pid 3512025
[2025-07-26 17:58:57] 2025-07-26 21:58:24,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 17:58:57] 2025-07-26 21:58:24,148 | INFO     | collected zombie processes
[2025-07-26 17:58:57] 2025-07-26 21:58:24,148 | INFO     | will attempt to kill all subprocesses of pid=3512025
[2025-07-26 17:58:57] 2025-07-26 21:58:24,816 | INFO     | process IDs to be killed: [3512025] (in reverse order)
[2025-07-26 17:58:57] 2025-07-26 21:58:25,032 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 17:58:57] 2025-07-26 21:58:25,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 17:58:57] 2025-07-26 21:58:25,059 | INFO     | did not find any defunct processes belonging to 3512025
[2025-07-26 17:58:57] 2025-07-26 21:58:25,086 | INFO     | did not find any defunct processes belonging to 3512025
[2025-07-26 17:58:57] 2025-07-26 21:58:25,087 | INFO     | ready for new job
[2025-07-26 17:58:57] 2025-07-26 21:58:25,087 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 17:58:57] 2025-07-26 21:58:25,088 | INFO     | ***************************************
[2025-07-26 17:58:57] 2025-07-26 21:58:25,089 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 17:58:57] 2025-07-26 21:58:25,089 | INFO     | ***************************************
[2025-07-26 17:58:57] 2025-07-26 21:58:25,089 | INFO     | 
[2025-07-26 17:58:57] 2025-07-26 21:58:25,095 | INFO     | architecture information:
[2025-07-26 17:58:57] 2025-07-26 21:58:25,096 | INFO     | executing command: cat /etc/os-release
[2025-07-26 17:58:57] 2025-07-26 21:58:25,113 | INFO     | cat /etc/os-release:
[2025-07-26 17:58:57] NAME="CentOS Linux"
[2025-07-26 17:58:57] VERSION="7 (Core)"
[2025-07-26 17:58:57] ID="centos"
[2025-07-26 17:58:57] ID_LIKE="rhel fedora"
[2025-07-26 17:58:57] VERSION_ID="7"
[2025-07-26 17:58:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 17:58:57] ANSI_COLOR="0;31"
[2025-07-26 17:58:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 17:58:57] HOME_URL="https://www.centos.org/"
[2025-07-26 17:58:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 17:58:57] 
[2025-07-26 17:58:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 17:58:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 17:58:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 17:58:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 17:58:57] 
[2025-07-26 17:58:57] 2025-07-26 21:58:25,114 | INFO     | ***************************************
[2025-07-26 17:58:57] 2025-07-26 21:58:25,617 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 17:58:57] 2025-07-26 21:58:25,676 | INFO     | sufficient remaining disk space (75718721536 B)
[2025-07-26 17:58:57] 2025-07-26 21:58:25,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 17:58:57] 2025-07-26 21:58:25,677 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 17:58:57] 2025-07-26 21:58:25,677 | INFO     | update_server=False
[2025-07-26 17:58:57] 2025-07-26 21:58:25,677 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 17:58:57] 2025-07-26 21:58:25,678 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 17:58:57] 2025-07-26 21:58:25,693 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 17:58:57] 2025-07-26 21:58:25,693 | INFO     | aborting loop
[2025-07-26 17:58:57] 2025-07-26 21:58:25,933 | INFO     | all payload control threads have been joined
[2025-07-26 17:58:57] 2025-07-26 21:58:26,659 | INFO     | all data control threads have been joined
[2025-07-26 17:58:57] 2025-07-26 21:58:26,684 | INFO     | [job] retrieve thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:26,699 | INFO     | [job] job monitor thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:26,850 | INFO     | [payload] validate_post thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:26,873 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:26,939 | INFO     | [payload] control thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:27,062 | INFO     | all job control threads have been joined
[2025-07-26 17:58:57] 2025-07-26 21:58:27,362 | INFO     | [payload] failed_post thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:27,402 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:27,665 | INFO     | [data] control thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:27,684 | INFO     | [data] copytool_out thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:27,690 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 17:58:57] 2025-07-26 21:58:27,727 | INFO     | [job] validate thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:28,068 | INFO     | [job] control thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:28,101 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 17:58:57] 2025-07-26 21:58:28,155 | INFO     | [data] copytool_in thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:28,155 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:29,106 | INFO     | [job] queue monitor thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:31,700 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:35,860 | INFO     | job.realtimelogging is not enabled
[2025-07-26 17:58:57] 2025-07-26 21:58:36,866 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 17:58:57] 2025-07-26 21:58:38,442 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140620046755648)>', '<ExcThread(monitor, started 140618940528384)>']
[2025-07-26 17:58:57] 2025-07-26 21:58:43,471 | INFO     | all workflow threads have been joined
[2025-07-26 17:58:57] 2025-07-26 21:58:43,471 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 17:58:57] 2025-07-26 21:58:43,472 | INFO     | traces error code: 0
[2025-07-26 17:58:57] 2025-07-26 21:58:43,472 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 17:58:57] 2025-07-26 21:58:56,636 | INFO     | PID=3484549 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 17:58:57] 2025-07-26 21:58:56,636 | INFO     | .. there are 39 such processes running
[2025-07-26 17:58:57] 2025-07-26 21:58:56,636 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 17:58:57] 2025-07-26 21:58:56,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 17:58:57] 2025-07-26 21:58:56,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 17:58:57] 2025-07-26 21:58:56,637 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 17:58:57] 2025-07-26 21:58:56,637 | INFO     | [monitor] control thread has ended
[2025-07-26 17:58:57] 2025-07-26 21:58:56,838 [wrapper] ==== pilot stdout END ====
[2025-07-26 17:58:57] 2025-07-26 21:58:56,845 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 17:58:57] 2025-07-26 21:58:56,869 [wrapper] pilotpid: 3484549
[2025-07-26 17:58:57] 2025-07-26 21:58:56,874 [wrapper] Pilot exit status: 0
[2025-07-26 17:58:57] 2025-07-26 21:58:56,907 [wrapper] pandaids: 6745229818
[2025-07-26 17:58:57] 2025-07-26 21:58:57,063 [wrapper] cleanup supervisor_pilot 1688011 3484550
[2025-07-26 17:58:57] 2025-07-26 21:58:57,101 [wrapper] Test setup, not cleaning
[2025-07-26 17:58:57] 2025-07-26 21:58:57,117 [wrapper] apfmon messages muted
[2025-07-26 17:58:57] 2025-07-26 21:58:57,133 [wrapper] ==== wrapper stdout END ====
[2025-07-26 17:58:57] 2025-07-26 21:58:57,149 [wrapper] ==== wrapper stderr END ====
[2025-07-26 17:58:57]  *** Error codes and diagnostics ***
[2025-07-26 17:58:57]     "exeErrorCode": 0,
[2025-07-26 17:58:57]     "exeErrorDiag": "",
[2025-07-26 17:58:57]     "pilotErrorCode": 0,
[2025-07-26 17:58:57]     "pilotErrorDiag": "",
[2025-07-26 17:58:57]  *** Listing of results directory ***
[2025-07-26 17:58:57] total 352088
[2025-07-26 17:58:57] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 10:40 pilot3.tar.gz
[2025-07-26 17:58:57] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 11:00 queuedata.json
[2025-07-26 17:58:57] -rwx------. 1 boincer umatlas     36292 Jul 26 11:02 runpilot2-wrapper.sh
[2025-07-26 17:58:57] -rw-r--r--. 1 boincer umatlas       100 Jul 26 16:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 17:58:57] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 16:20 run_atlas
[2025-07-26 17:58:57] -rw-r--r--. 1 boincer umatlas       105 Jul 26 16:20 job.xml
[2025-07-26 17:58:57] -rw-r--r--. 2 boincer umatlas 148455847 Jul 26 16:20 EVNT.45743347._002262.pool.root.1
[2025-07-26 17:58:57] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 16:20 start_atlas.sh
[2025-07-26 17:58:57] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 16:20 shared
[2025-07-26 17:58:57] -rw-r--r--. 2 boincer umatlas    542898 Jul 26 16:20 input.tar.gz
[2025-07-26 17:58:57] -rw-r--r--. 1 boincer umatlas         0 Jul 26 16:20 boinc_lockfile
[2025-07-26 17:58:57] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 16:20 pandaJob.out
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas    980125 Jul 26 16:20 agis_schedconf.cvmfs.json
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas   1593052 Jul 26 16:20 agis_ddmendpoints.agis.ALL.json
[2025-07-26 17:58:57] drwx------. 4 boincer umatlas      4096 Jul 26 16:20 pilot3
[2025-07-26 17:58:57] -rw-r--r--. 1 boincer umatlas      6932 Jul 26 17:55 init_data.xml
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas 206493689 Jul 26 17:57 HITS.45743349._039726.pool.root.1
[2025-07-26 17:58:57] -rw-r--r--. 1 boincer umatlas       530 Jul 26 17:57 boinc_task_state.xml
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas      1037 Jul 26 17:58 memory_monitor_summary.json
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas    317154 Jul 26 17:58 log.45743349._039726.job.log.tgz.1
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas        95 Jul 26 17:58 pilot_heartbeat.json
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas      7774 Jul 26 17:58 heartbeat.json
[2025-07-26 17:58:57] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 17:58 boinc_mmap_file
[2025-07-26 17:58:57] -rw-r--r--. 1 boincer umatlas        27 Jul 26 17:58 wrapper_checkpoint.txt
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas       823 Jul 26 17:58 pilotlog.txt
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas    537399 Jul 26 17:58 log.45743349._039726.job.log.1
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas       357 Jul 26 17:58 output.list
[2025-07-26 17:58:57] -rw-r--r--. 1 boincer umatlas       620 Jul 26 17:58 runtime_log
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas    870400 Jul 26 17:58 result.tar.gz
[2025-07-26 17:58:57] -rw-r--r--. 1 boincer umatlas      8655 Jul 26 17:58 runtime_log.err
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas       652 Jul 26 17:58 Q1VLDmvavz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3OSLDmCv0zTn.diag
[2025-07-26 17:58:57] -rw-r--r--. 1 boincer umatlas     22424 Jul 26 17:58 stderr.txt
[2025-07-26 17:58:57] HITS file was successfully produced:
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas 206493689 Jul 26 17:57 shared/HITS.pool.root.1
[2025-07-26 17:58:57]  *** Contents of shared directory: ***
[2025-07-26 17:58:57] total 348044
[2025-07-26 17:58:57] -rw-r--r--. 2 boincer umatlas 148455847 Jul 26 16:20 ATLAS.root_0
[2025-07-26 17:58:57] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 16:20 start_atlas.sh
[2025-07-26 17:58:57] -rw-r--r--. 2 boincer umatlas    542898 Jul 26 16:20 input.tar.gz
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas 206493689 Jul 26 17:57 HITS.pool.root.1
[2025-07-26 17:58:57] -rw-------. 1 boincer umatlas    870400 Jul 26 17:58 result.tar.gz
17:58:58 (3474839): run_atlas exited; CPU time 36661.628155
17:58:58 (3474839): called boinc_finish(0)

</stderr_txt>
]]>

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