Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:22:16 (816093): wrapper (7.7.26015): starting
16:22:16 (816093): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 16:22:16] Arguments: --nthreads 8
[2025-07-26 16:22:16] Threads: 8
[2025-07-26 16:22:16] Checking for CVMFS
[2025-07-26 16:22:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 16:22:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 16:22:17] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 16:22:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 16:22:17] 2.13.0.0 1923533 18698 298456 148788 0 413 29754427 32935937 21247 16776704 0 87877296 99.555 140548857 19494 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 16:22:17] CVMFS is ok
[2025-07-26 16:22:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 16:22:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 16:22:17] Further information can be found at the LHC@home message board.
[2025-07-26 16:22:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 16:22:17] Checking for apptainer binary...
[2025-07-26 16:22:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 16:22:17] Running /usr/bin/apptainer --version
[2025-07-26 16:22:17] apptainer version 1.4.1-1.el9
[2025-07-26 16:22:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 16:22:18] c7-3-17.aglt2.org
[2025-07-26 16:22:18] apptainer works
[2025-07-26 16:22:18] Set ATHENA_PROC_NUMBER=8
[2025-07-26 16:22:18] Set ATHENA_CORE_NUMBER=8
[2025-07-26 16:22:18] Starting ATLAS job with PandaID=6745229626
[2025-07-26 16:22:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 17:59:22]  *** The last 200 lines of the pilot log: ***
[2025-07-26 17:59:22]  protocol_id=None
[2025-07-26 17:59:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 17:59:22]  replicas=None
[2025-07-26 17:59:22]  scope=mc23_13p6TeV
[2025-07-26 17:59:22]  status=None
[2025-07-26 17:59:22]  status_code=0
[2025-07-26 17:59:22]  storage_token=
[2025-07-26 17:59:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745229626/log.45743349._039591.job.log.tgz.1
[2025-07-26 17:59:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/25/8f/log.45743349._039591.job.log.tgz.1
[2025-07-26 17:59:22]  workdir=None
[2025-07-26 17:59:22] ]
[2025-07-26 17:59:22] 2025-07-26 21:58:39,928 | INFO     | transferring file log.45743349._039591.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745229626/log.45743349._039591.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 17:59:22] 2025-07-26 21:58:39,929 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745229626/log.45743349._039591.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._039591.job
[2025-07-26 17:59:22] 2025-07-26 21:58:39,963 | INFO     | adding to output.list: log.45743349._039591.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/25/8f/log.45743349._039591.job.log.tg
[2025-07-26 17:59:22] 2025-07-26 21:58:39,964 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 17:59:22] 2025-07-26 21:58:39,965 | INFO     | summary of transferred files:
[2025-07-26 17:59:22] 2025-07-26 21:58:39,965 | INFO     |  -- lfn=log.45743349._039591.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 17:59:22] 2025-07-26 21:58:39,965 | INFO     | stage-out finished correctly
[2025-07-26 17:59:22] 2025-07-26 21:58:40,059 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 17:59:22] 2025-07-26 21:58:41,195 | INFO     | monitor loop #410: job 0:6745229626 is in state 'finished'
[2025-07-26 17:59:22] 2025-07-26 21:58:41,196 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:59:22] 2025-07-26 21:58:41,357 | INFO     | job 6745229626 has state=finished
[2025-07-26 17:59:22] 2025-07-26 21:58:41,357 | INFO     | preparing for final server update for job 6745229626 in state='finished'
[2025-07-26 17:59:22] 2025-07-26 21:58:41,359 | INFO     | this job has now completed (state=finished)
[2025-07-26 17:59:22] 2025-07-26 21:58:41,359 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 17:59:22] 2025-07-26 21:58:41,359 | INFO     | log transfer has been attempted: DONE
[2025-07-26 17:59:22] 2025-07-26 21:58:41,359 | INFO     | job 6745229626 has finished - writing final server update
[2025-07-26 17:59:22] 2025-07-26 21:58:41,359 | INFO     | total number of processed events: 400 (read)
[2025-07-26 17:59:22] 2025-07-26 21:58:41,361 | INFO     | executing command: lscpu
[2025-07-26 17:59:22] 2025-07-26 21:58:41,467 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 17:59:22] 2025-07-26 21:58:43,703 | INFO     | monitor loop #411: job 0:6745229626 is in state 'finished'
[2025-07-26 17:59:22] 2025-07-26 21:58:43,705 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:59:22] 2025-07-26 21:58:46,211 | INFO     | monitor loop #412: job 0:6745229626 is in state 'finished'
[2025-07-26 17:59:22] 2025-07-26 21:58:46,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:59:22] 2025-07-26 21:58:48,723 | INFO     | monitor loop #413: job 0:6745229626 is in state 'finished'
[2025-07-26 17:59:22] 2025-07-26 21:58:48,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:59:22] 2025-07-26 21:58:49,011 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 17:59:22] 2025-07-26 21:58:49,034 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2955.7189791666665
[2025-07-26 17:59:22] 2025-07-26 21:58:49,057 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745229626/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 17:59:22] 2025-07-26 21:58:49,058 | INFO     | extracted standard info from prmon json
[2025-07-26 17:59:22] 2025-07-26 21:58:49,058 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 17:59:22] 2025-07-26 21:58:49,058 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 17:59:22] 2025-07-26 21:58:49,058 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 17:59:22] 2025-07-26 21:58:49,058 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 17:59:22] 2025-07-26 21:58:49,060 | INFO     | fitting pss+swap vs Time
[2025-07-26 17:59:22] 2025-07-26 21:58:49,061 | INFO     | sum of square deviations: 204163828.0
[2025-07-26 17:59:22] 2025-07-26 21:58:49,061 | INFO     | sum of deviations: -6464108450.999999
[2025-07-26 17:59:22] 2025-07-26 21:58:49,061 | INFO     | mean x: 1753564363.0
[2025-07-26 17:59:22] 2025-07-26 21:58:49,061 | INFO     | mean y: 2270366.9310344825
[2025-07-26 17:59:22] 2025-07-26 21:58:49,061 | INFO     | -- intersect: 55522537249.07791
[2025-07-26 17:59:22] 2025-07-26 21:58:49,061 | INFO     | intersect: 55522537249.07791
[2025-07-26 17:59:22] 2025-07-26 21:58:49,062 | INFO     | chi2: 0.055373531329881945
[2025-07-26 17:59:22] 2025-07-26 21:58:49,062 | INFO     | -- intersect: 55522537249.07791
[2025-07-26 17:59:22] 2025-07-26 21:58:49,062 | INFO     | current memory leak: -31.66 B/s (using 87 data points, chi2=0.06)
[2025-07-26 17:59:22] 2025-07-26 21:58:49,062 | INFO     | could have reported an average CPU frequency of 2960 MHz (7 samples)
[2025-07-26 17:59:22] 2025-07-26 21:58:49,062 | INFO     | ..............................
[2025-07-26 17:59:22] 2025-07-26 21:58:49,062 | INFO     | . Timing measurements:
[2025-07-26 17:59:22] 2025-07-26 21:58:49,062 | INFO     | . get job = 0 s
[2025-07-26 17:59:22] 2025-07-26 21:58:49,063 | INFO     | . initial setup = 3 s
[2025-07-26 17:59:22] 2025-07-26 21:58:49,063 | INFO     | . payload setup = 21 s
[2025-07-26 17:59:22] 2025-07-26 21:58:49,063 | INFO     | . stage-in = 0 s
[2025-07-26 17:59:22] 2025-07-26 21:58:49,063 | INFO     | . payload execution = 5693 s
[2025-07-26 17:59:22] 2025-07-26 21:58:49,063 | INFO     | . stage-out = 0 s
[2025-07-26 17:59:22] 2025-07-26 21:58:49,063 | INFO     | . log creation = 0 s
[2025-07-26 17:59:22] 2025-07-26 21:58:49,063 | INFO     | ..............................
[2025-07-26 17:59:22] 2025-07-26 21:58:49,172 | INFO     | 
[2025-07-26 17:59:22] 2025-07-26 21:58:49,173 | INFO     | job summary report
[2025-07-26 17:59:22] 2025-07-26 21:58:49,174 | INFO     | --------------------------------------------------
[2025-07-26 17:59:22] 2025-07-26 21:58:49,174 | INFO     | PanDA job id: 6745229626
[2025-07-26 17:59:22] 2025-07-26 21:58:49,174 | INFO     | task id: 45743349
[2025-07-26 17:59:22] 2025-07-26 21:58:49,174 | INFO     | errors: (none)
[2025-07-26 17:59:22] 2025-07-26 21:58:49,174 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 17:59:22] 2025-07-26 21:58:49,174 | INFO     | pilot state: finished 
[2025-07-26 17:59:22] 2025-07-26 21:58:49,174 | INFO     | transexitcode: 0
[2025-07-26 17:59:22] 2025-07-26 21:58:49,174 | INFO     | exeerrorcode: 0
[2025-07-26 17:59:22] 2025-07-26 21:58:49,174 | INFO     | exeerrordiag: 
[2025-07-26 17:59:22] 2025-07-26 21:58:49,174 | INFO     | exitcode: 0
[2025-07-26 17:59:22] 2025-07-26 21:58:49,174 | INFO     | exitmsg: OK
[2025-07-26 17:59:22] 2025-07-26 21:58:49,175 | INFO     | cpuconsumptiontime: 36991 s
[2025-07-26 17:59:22] 2025-07-26 21:58:49,175 | INFO     | nevents: 400
[2025-07-26 17:59:22] 2025-07-26 21:58:49,175 | INFO     | neventsw: 0
[2025-07-26 17:59:22] 2025-07-26 21:58:49,175 | INFO     | pid: 828112
[2025-07-26 17:59:22] 2025-07-26 21:58:49,175 | INFO     | pgrp: 828112
[2025-07-26 17:59:22] 2025-07-26 21:58:49,175 | INFO     | corecount: 8
[2025-07-26 17:59:22] 2025-07-26 21:58:49,175 | INFO     | event service: False
[2025-07-26 17:59:22] 2025-07-26 21:58:49,175 | INFO     | sizes: {0: 2397422, 11: 2397422, 14: 2397712, 22: 2397740, 5718: 2424419, 5719: 2424418, 5720: 2433656, 5729: 2433794}
[2025-07-26 17:59:22] 2025-07-26 21:58:49,175 | INFO     | --------------------------------------------------
[2025-07-26 17:59:22] 2025-07-26 21:58:49,175 | INFO     | 
[2025-07-26 17:59:22] 2025-07-26 21:58:49,175 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 17:59:22] 2025-07-26 21:58:49,224 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,224 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,224 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,225 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,225 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,225 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,225 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,225 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,225 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,225 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,225 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,225 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,226 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,226 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,226 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,226 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,226 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,226 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 17:59:22] 2025-07-26 21:58:49,226 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,226 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 17:59:22] 2025-07-26 21:58:49,226 | INFO     | job 6745229626 has completed (purged errors)
[2025-07-26 17:59:22] 2025-07-26 21:58:49,227 | INFO     | overall cleanup function is called
[2025-07-26 17:59:22] 2025-07-26 21:58:50,236 | INFO     | --- collectZombieJob: --- 10, [828112]
[2025-07-26 17:59:22] 2025-07-26 21:58:50,238 | INFO     | zombie collector waiting for pid 828112
[2025-07-26 17:59:22] 2025-07-26 21:58:50,238 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 17:59:22] 2025-07-26 21:58:50,239 | INFO     | collected zombie processes
[2025-07-26 17:59:22] 2025-07-26 21:58:50,239 | INFO     | will attempt to kill all subprocesses of pid=828112
[2025-07-26 17:59:22] 2025-07-26 21:58:50,766 | INFO     | process IDs to be killed: [828112] (in reverse order)
[2025-07-26 17:59:22] 2025-07-26 21:58:50,929 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 17:59:22] 2025-07-26 21:58:50,930 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 17:59:22] 2025-07-26 21:58:50,954 | INFO     | did not find any defunct processes belonging to 828112
[2025-07-26 17:59:22] 2025-07-26 21:58:50,976 | INFO     | did not find any defunct processes belonging to 828112
[2025-07-26 17:59:22] 2025-07-26 21:58:50,976 | INFO     | ready for new job
[2025-07-26 17:59:22] 2025-07-26 21:58:50,976 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 17:59:22] 2025-07-26 21:58:50,979 | INFO     | ***************************************
[2025-07-26 17:59:22] 2025-07-26 21:58:50,979 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 17:59:22] 2025-07-26 21:58:50,979 | INFO     | ***************************************
[2025-07-26 17:59:22] 2025-07-26 21:58:50,979 | INFO     | 
[2025-07-26 17:59:22] 2025-07-26 21:58:50,985 | INFO     | architecture information:
[2025-07-26 17:59:22] 2025-07-26 21:58:50,985 | INFO     | executing command: cat /etc/os-release
[2025-07-26 17:59:22] 2025-07-26 21:58:51,003 | INFO     | cat /etc/os-release:
[2025-07-26 17:59:22] NAME="CentOS Linux"
[2025-07-26 17:59:22] VERSION="7 (Core)"
[2025-07-26 17:59:22] ID="centos"
[2025-07-26 17:59:22] ID_LIKE="rhel fedora"
[2025-07-26 17:59:22] VERSION_ID="7"
[2025-07-26 17:59:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 17:59:22] ANSI_COLOR="0;31"
[2025-07-26 17:59:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 17:59:22] HOME_URL="https://www.centos.org/"
[2025-07-26 17:59:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 17:59:22] 
[2025-07-26 17:59:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 17:59:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 17:59:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 17:59:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 17:59:22] 
[2025-07-26 17:59:22] 2025-07-26 21:58:51,004 | INFO     | ***************************************
[2025-07-26 17:59:22] 2025-07-26 21:58:51,508 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 17:59:22] 2025-07-26 21:58:51,548 | INFO     | sufficient remaining disk space (75484889088 B)
[2025-07-26 17:59:22] 2025-07-26 21:58:51,548 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 17:59:22] 2025-07-26 21:58:51,548 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 17:59:22] 2025-07-26 21:58:51,549 | INFO     | update_server=False
[2025-07-26 17:59:22] 2025-07-26 21:58:51,549 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 17:59:22] 2025-07-26 21:58:51,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 17:59:22] 2025-07-26 21:58:51,557 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 17:59:22] 2025-07-26 21:58:52,239 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 17:59:22] 2025-07-26 21:58:52,241 | INFO     | aborting loop
[2025-07-26 17:59:22] 2025-07-26 21:58:52,555 | INFO     | [job] retrieve thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:58:52,632 | INFO     | all data control threads have been joined
[2025-07-26 17:59:22] 2025-07-26 21:58:52,944 | INFO     | [payload] validate_post thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:58:52,976 | INFO     | all payload control threads have been joined
[2025-07-26 17:59:22] 2025-07-26 21:58:53,086 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:58:53,160 | INFO     | all job control threads have been joined
[2025-07-26 17:59:22] 2025-07-26 21:58:53,236 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:58:53,246 | INFO     | [job] job monitor thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:58:53,443 | INFO     | [job] validate thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:58:53,474 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:58:53,566 | INFO     | [data] copytool_out thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:58:53,637 | INFO     | [data] control thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:58:53,982 | INFO     | [payload] control thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:58:54,036 | INFO     | [data] copytool_in thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:58:54,127 | INFO     | [payload] failed_post thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:58:54,165 | INFO     | [job] control thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:58:54,184 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 17:59:22] 2025-07-26 21:58:55,188 | INFO     | [job] queue monitor thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:58:55,558 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:59:02,593 | INFO     | job.realtimelogging is not enabled
[2025-07-26 17:59:22] 2025-07-26 21:59:03,598 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 17:59:22] 2025-07-26 21:59:05,468 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140007779055424)>', '<ExcThread(monitor, started 140007436166912)>']
[2025-07-26 17:59:22] 2025-07-26 21:59:10,493 | INFO     | all workflow threads have been joined
[2025-07-26 17:59:22] 2025-07-26 21:59:10,494 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 17:59:22] 2025-07-26 21:59:10,494 | INFO     | traces error code: 0
[2025-07-26 17:59:22] 2025-07-26 21:59:10,494 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 17:59:22] 2025-07-26 21:59:22,144 | INFO     | PID=819729 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 17:59:22] 2025-07-26 21:59:22,145 | INFO     | .. there are 22 such processes running
[2025-07-26 17:59:22] 2025-07-26 21:59:22,145 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 17:59:22] 2025-07-26 21:59:22,146 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 17:59:22] 2025-07-26 21:59:22,146 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 17:59:22] 2025-07-26 21:59:22,146 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 17:59:22] 2025-07-26 21:59:22,146 | INFO     | [monitor] control thread has ended
[2025-07-26 17:59:22] 2025-07-26 21:59:22,300 [wrapper] ==== pilot stdout END ====
[2025-07-26 17:59:22] 2025-07-26 21:59:22,307 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 17:59:22] 2025-07-26 21:59:22,311 [wrapper] pilotpid: 819729
[2025-07-26 17:59:22] 2025-07-26 21:59:22,318 [wrapper] Pilot exit status: 0
[2025-07-26 17:59:22] 2025-07-26 21:59:22,344 [wrapper] pandaids: 6745229626
[2025-07-26 17:59:22] 2025-07-26 21:59:22,478 [wrapper] cleanup supervisor_pilot 1211706 819730
[2025-07-26 17:59:22] 2025-07-26 21:59:22,484 [wrapper] Test setup, not cleaning
[2025-07-26 17:59:22] 2025-07-26 21:59:22,488 [wrapper] apfmon messages muted
[2025-07-26 17:59:22] 2025-07-26 21:59:22,493 [wrapper] ==== wrapper stdout END ====
[2025-07-26 17:59:22] 2025-07-26 21:59:22,498 [wrapper] ==== wrapper stderr END ====
[2025-07-26 17:59:22]  *** Error codes and diagnostics ***
[2025-07-26 17:59:22]     "exeErrorCode": 0,
[2025-07-26 17:59:22]     "exeErrorDiag": "",
[2025-07-26 17:59:22]     "pilotErrorCode": 0,
[2025-07-26 17:59:22]     "pilotErrorDiag": "",
[2025-07-26 17:59:22]  *** Listing of results directory ***
[2025-07-26 17:59:22] total 434988
[2025-07-26 17:59:22] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 10:40 pilot3.tar.gz
[2025-07-26 17:59:22] -rwx------. 1 boincer umatlas     36292 Jul 26 10:54 runpilot2-wrapper.sh
[2025-07-26 17:59:22] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 10:54 queuedata.json
[2025-07-26 17:59:22] -rw-r--r--. 1 boincer umatlas       100 Jul 26 16:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 17:59:22] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 16:22 run_atlas
[2025-07-26 17:59:22] -rw-r--r--. 1 boincer umatlas       105 Jul 26 16:22 job.xml
[2025-07-26 17:59:22] -rw-r--r--. 2 boincer umatlas 230839833 Jul 26 16:22 EVNT.45743347._002256.pool.root.1
[2025-07-26 17:59:22] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 16:22 start_atlas.sh
[2025-07-26 17:59:22] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 16:22 shared
[2025-07-26 17:59:22] -rw-r--r--. 2 boincer umatlas    542892 Jul 26 16:22 input.tar.gz
[2025-07-26 17:59:22] -rw-r--r--. 1 boincer umatlas         0 Jul 26 16:22 boinc_lockfile
[2025-07-26 17:59:22] -rw-r--r--. 1 boincer umatlas      2561 Jul 26 16:22 pandaJob.out
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas    980125 Jul 26 16:22 agis_schedconf.cvmfs.json
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas   1593052 Jul 26 16:22 agis_ddmendpoints.agis.ALL.json
[2025-07-26 17:59:22] drwx------. 4 boincer umatlas      4096 Jul 26 16:22 pilot3
[2025-07-26 17:59:22] -rw-r--r--. 1 boincer umatlas      6931 Jul 26 17:57 init_data.xml
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas 209007421 Jul 26 17:58 HITS.45743349._039591.pool.root.1
[2025-07-26 17:59:22] -rw-r--r--. 1 boincer umatlas       529 Jul 26 17:58 boinc_task_state.xml
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas      1030 Jul 26 17:58 memory_monitor_summary.json
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas    302124 Jul 26 17:58 log.45743349._039591.job.log.tgz.1
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas      7772 Jul 26 17:58 heartbeat.json
[2025-07-26 17:59:22] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 17:59 boinc_mmap_file
[2025-07-26 17:59:22] -rw-r--r--. 1 boincer umatlas        27 Jul 26 17:59 wrapper_checkpoint.txt
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas       822 Jul 26 17:59 pilotlog.txt
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas        95 Jul 26 17:59 pilot_heartbeat.json
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas    548434 Jul 26 17:59 log.45743349._039591.job.log.1
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas       357 Jul 26 17:59 output.list
[2025-07-26 17:59:22] -rw-r--r--. 1 boincer umatlas       620 Jul 26 17:59 runtime_log
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas    870400 Jul 26 17:59 result.tar.gz
[2025-07-26 17:59:22] -rw-r--r--. 1 boincer umatlas      8655 Jul 26 17:59 runtime_log.err
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas       651 Jul 26 17:59 7PNNDmPTvz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmEw0KDmt53jln.diag
[2025-07-26 17:59:22] -rw-r--r--. 1 boincer umatlas     21828 Jul 26 17:59 stderr.txt
[2025-07-26 17:59:22] HITS file was successfully produced:
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas 209007421 Jul 26 17:58 shared/HITS.pool.root.1
[2025-07-26 17:59:22]  *** Contents of shared directory: ***
[2025-07-26 17:59:22] total 430952
[2025-07-26 17:59:22] -rw-r--r--. 2 boincer umatlas 230839833 Jul 26 16:22 ATLAS.root_0
[2025-07-26 17:59:22] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 16:22 start_atlas.sh
[2025-07-26 17:59:22] -rw-r--r--. 2 boincer umatlas    542892 Jul 26 16:22 input.tar.gz
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas 209007421 Jul 26 17:58 HITS.pool.root.1
[2025-07-26 17:59:22] -rw-------. 1 boincer umatlas    870400 Jul 26 17:59 result.tar.gz
17:59:24 (816093): run_atlas exited; CPU time 37211.235857
17:59:24 (816093): called boinc_finish(0)

</stderr_txt>
]]>

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