Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:14:07 (781710): wrapper (7.7.26015): starting
16:14:07 (781710): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 16:14:07] Arguments: --nthreads 8
[2025-07-26 16:14:07] Threads: 8
[2025-07-26 16:14:07] Checking for CVMFS
[2025-07-26 16:14:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 16:14:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 16:14:07] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 16:14:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 16:14:08] 2.13.0.0 1923533 18690 314600 148787 0 691 29746549 32935937 20687 16776704 0 87818860 99.555 140547564 19494 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 16:14:08] CVMFS is ok
[2025-07-26 16:14:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 16:14:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 16:14:08] Further information can be found at the LHC@home message board.
[2025-07-26 16:14:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 16:14:08] Checking for apptainer binary...
[2025-07-26 16:14:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 16:14:08] Running /usr/bin/apptainer --version
[2025-07-26 16:14:08] apptainer version 1.4.1-1.el9
[2025-07-26 16:14:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 16:14:08] c7-3-17.aglt2.org
[2025-07-26 16:14:08] apptainer works
[2025-07-26 16:14:08] Set ATHENA_PROC_NUMBER=8
[2025-07-26 16:14:08] Set ATHENA_CORE_NUMBER=8
[2025-07-26 16:14:08] Starting ATLAS job with PandaID=6745229652
[2025-07-26 16:14:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 18:09:48]  *** The last 200 lines of the pilot log: ***
[2025-07-26 18:09:48] 2025-07-26 22:09:15,443 | INFO     | monitor loop #481: job 0:6745229652 is in state 'finished'
[2025-07-26 18:09:48] 2025-07-26 22:09:15,444 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 18:09:48] 2025-07-26 22:09:15,819 | INFO     | PID=785380 has CPU usage=10.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 18:09:48] 2025-07-26 22:09:15,819 | INFO     | .. there are 22 such processes running
[2025-07-26 18:09:48] 2025-07-26 22:09:16,288 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 18:09:48] 2025-07-26 22:09:16,294 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2956.0871666666667
[2025-07-26 18:09:48] 2025-07-26 22:09:16,310 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745229652/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 18:09:48] 2025-07-26 22:09:16,311 | INFO     | extracted standard info from prmon json
[2025-07-26 18:09:48] 2025-07-26 22:09:16,311 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 18:09:48] 2025-07-26 22:09:16,311 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 18:09:48] 2025-07-26 22:09:16,311 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 18:09:48] 2025-07-26 22:09:16,311 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 18:09:48] 2025-07-26 22:09:16,313 | INFO     | fitting pss+swap vs Time
[2025-07-26 18:09:48] 2025-07-26 22:09:16,313 | INFO     | sum of square deviations: 435610028.0
[2025-07-26 18:09:48] 2025-07-26 22:09:16,314 | INFO     | sum of deviations: -2146088824.0000005
[2025-07-26 18:09:48] 2025-07-26 22:09:16,314 | INFO     | mean x: 1753564304.5
[2025-07-26 18:09:48] 2025-07-26 22:09:16,314 | INFO     | mean y: 2379366.7321428573
[2025-07-26 18:09:48] 2025-07-26 22:09:16,314 | INFO     | -- intersect: 8641539427.695625
[2025-07-26 18:09:48] 2025-07-26 22:09:16,314 | INFO     | intersect: 8641539427.695625
[2025-07-26 18:09:48] 2025-07-26 22:09:16,315 | INFO     | chi2: 1.5182736801896295
[2025-07-26 18:09:48] 2025-07-26 22:09:16,315 | INFO     | sum of square deviations: 379832238.0
[2025-07-26 18:09:48] 2025-07-26 22:09:16,315 | INFO     | sum of deviations: -1398872800.9999988
[2025-07-26 18:09:48] 2025-07-26 22:09:16,316 | INFO     | mean x: 1753564152.0
[2025-07-26 18:09:48] 2025-07-26 22:09:16,316 | INFO     | mean y: 2381410.9813084113
[2025-07-26 18:09:48] 2025-07-26 22:09:16,316 | INFO     | -- intersect: 6460530434.765402
[2025-07-26 18:09:48] 2025-07-26 22:09:16,316 | INFO     | intersect: 6460530434.765402
[2025-07-26 18:09:48] 2025-07-26 22:09:16,316 | INFO     | chi2: 1.5204788050218743
[2025-07-26 18:09:48] 2025-07-26 22:09:16,316 | INFO     | current chi2=1.5204788050218743 (change=-0.14523895533573103 %)
[2025-07-26 18:09:48] 2025-07-26 22:09:16,316 | INFO     | right removable region: 106
[2025-07-26 18:09:48] 2025-07-26 22:09:16,316 | INFO     | sum of square deviations: 379832238.0
[2025-07-26 18:09:48] 2025-07-26 22:09:16,317 | INFO     | sum of deviations: -16716327089.0
[2025-07-26 18:09:48] 2025-07-26 22:09:16,317 | INFO     | mean x: 1753564457.0
[2025-07-26 18:09:48] 2025-07-26 22:09:16,317 | INFO     | mean y: 2418203.495327103
[2025-07-26 18:09:48] 2025-07-26 22:09:16,317 | INFO     | -- intersect: 77176375814.89923
[2025-07-26 18:09:48] 2025-07-26 22:09:16,317 | INFO     | intersect: 77176375814.89923
[2025-07-26 18:09:48] 2025-07-26 22:09:16,318 | INFO     | chi2: 0.04609486311943605
[2025-07-26 18:09:48] 2025-07-26 22:09:16,318 | INFO     | current chi2=0.04609486311943605 (change=96.96399511360305 %)
[2025-07-26 18:09:48] 2025-07-26 22:09:16,318 | INFO     | sum of square deviations: 329031285.5
[2025-07-26 18:09:48] 2025-07-26 22:09:16,318 | INFO     | sum of deviations: -13593760177.499998
[2025-07-26 18:09:48] 2025-07-26 22:09:16,318 | INFO     | mean x: 1753564609.5
[2025-07-26 18:09:48] 2025-07-26 22:09:16,319 | INFO     | mean y: 2408856.088235294
[2025-07-26 18:09:48] 2025-07-26 22:09:16,319 | INFO     | -- intersect: 72450038634.12172
[2025-07-26 18:09:48] 2025-07-26 22:09:16,319 | INFO     | intersect: 72450038634.12172
[2025-07-26 18:09:48] 2025-07-26 22:09:16,319 | INFO     | chi2: 0.04133778246460578
[2025-07-26 18:09:48] 2025-07-26 22:09:16,319 | INFO     | current chi2=0.04133778246460578 (change=10.320196943646918 %)
[2025-07-26 18:09:48] 2025-07-26 22:09:16,319 | INFO     | left removable region: 20
[2025-07-26 18:09:48] 2025-07-26 22:09:16,319 | INFO     | sum of square deviations: 197203697.5
[2025-07-26 18:09:48] 2025-07-26 22:09:16,320 | INFO     | sum of deviations: -10324711495.5
[2025-07-26 18:09:48] 2025-07-26 22:09:16,320 | INFO     | mean x: 1753564731.5
[2025-07-26 18:09:48] 2025-07-26 22:09:16,320 | INFO     | mean y: 2405676.3372093025
[2025-07-26 18:09:48] 2025-07-26 22:09:16,320 | INFO     | -- intersect: 91811282340.13008
[2025-07-26 18:09:48] 2025-07-26 22:09:16,320 | INFO     | intersect: 91811282340.13008
[2025-07-26 18:09:48] 2025-07-26 22:09:16,320 | INFO     | chi2: 0.03110986755874348
[2025-07-26 18:09:48] 2025-07-26 22:09:16,320 | INFO     | -- intersect: 91811282340.13008
[2025-07-26 18:09:48] 2025-07-26 22:09:16,321 | INFO     | current memory leak: -52.36 B/s (using 86 data points, chi2=0.03)
[2025-07-26 18:09:48] 2025-07-26 22:09:16,321 | INFO     | could have reported an average CPU frequency of 2963 MHz (7 samples)
[2025-07-26 18:09:48] 2025-07-26 22:09:16,321 | INFO     | ..............................
[2025-07-26 18:09:48] 2025-07-26 22:09:16,321 | INFO     | . Timing measurements:
[2025-07-26 18:09:48] 2025-07-26 22:09:16,321 | INFO     | . get job = 0 s
[2025-07-26 18:09:48] 2025-07-26 22:09:16,321 | INFO     | . initial setup = 3 s
[2025-07-26 18:09:48] 2025-07-26 22:09:16,321 | INFO     | . payload setup = 13 s
[2025-07-26 18:09:48] 2025-07-26 22:09:16,321 | INFO     | . stage-in = 0 s
[2025-07-26 18:09:48] 2025-07-26 22:09:16,321 | INFO     | . payload execution = 6831 s
[2025-07-26 18:09:48] 2025-07-26 22:09:16,322 | INFO     | . stage-out = 0 s
[2025-07-26 18:09:48] 2025-07-26 22:09:16,322 | INFO     | . log creation = 0 s
[2025-07-26 18:09:48] 2025-07-26 22:09:16,322 | INFO     | ..............................
[2025-07-26 18:09:48] 2025-07-26 22:09:16,410 | INFO     | 
[2025-07-26 18:09:48] 2025-07-26 22:09:16,410 | INFO     | job summary report
[2025-07-26 18:09:48] 2025-07-26 22:09:16,410 | INFO     | --------------------------------------------------
[2025-07-26 18:09:48] 2025-07-26 22:09:16,411 | INFO     | PanDA job id: 6745229652
[2025-07-26 18:09:48] 2025-07-26 22:09:16,411 | INFO     | task id: 45743349
[2025-07-26 18:09:48] 2025-07-26 22:09:16,411 | INFO     | errors: (none)
[2025-07-26 18:09:48] 2025-07-26 22:09:16,411 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 18:09:48] 2025-07-26 22:09:16,411 | INFO     | pilot state: finished 
[2025-07-26 18:09:48] 2025-07-26 22:09:16,411 | INFO     | transexitcode: 0
[2025-07-26 18:09:48] 2025-07-26 22:09:16,411 | INFO     | exeerrorcode: 0
[2025-07-26 18:09:48] 2025-07-26 22:09:16,411 | INFO     | exeerrordiag: 
[2025-07-26 18:09:48] 2025-07-26 22:09:16,411 | INFO     | exitcode: 0
[2025-07-26 18:09:48] 2025-07-26 22:09:16,411 | INFO     | exitmsg: OK
[2025-07-26 18:09:48] 2025-07-26 22:09:16,411 | INFO     | cpuconsumptiontime: 38336 s
[2025-07-26 18:09:48] 2025-07-26 22:09:16,411 | INFO     | nevents: 400
[2025-07-26 18:09:48] 2025-07-26 22:09:16,412 | INFO     | neventsw: 0
[2025-07-26 18:09:48] 2025-07-26 22:09:16,412 | INFO     | pid: 794236
[2025-07-26 18:09:48] 2025-07-26 22:09:16,412 | INFO     | pgrp: 794236
[2025-07-26 18:09:48] 2025-07-26 22:09:16,412 | INFO     | corecount: 8
[2025-07-26 18:09:48] 2025-07-26 22:09:16,412 | INFO     | event service: False
[2025-07-26 18:09:48] 2025-07-26 22:09:16,412 | INFO     | sizes: {0: 2397422, 11: 2397422, 13: 2397712, 22: 2397768, 6849: 2424938, 6851: 2433936, 6853: 2434120, 6860: 2434314}
[2025-07-26 18:09:48] 2025-07-26 22:09:16,412 | INFO     | --------------------------------------------------
[2025-07-26 18:09:48] 2025-07-26 22:09:16,412 | INFO     | 
[2025-07-26 18:09:48] 2025-07-26 22:09:16,412 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-26 18:09:48] 2025-07-26 22:09:16,432 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,432 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,432 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,432 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,432 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,432 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,433 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,433 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,433 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,433 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,433 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,433 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,433 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,433 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,433 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,433 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,433 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,434 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 18:09:48] 2025-07-26 22:09:16,434 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,434 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 18:09:48] 2025-07-26 22:09:16,434 | INFO     | job 6745229652 has completed (purged errors)
[2025-07-26 18:09:48] 2025-07-26 22:09:16,434 | INFO     | overall cleanup function is called
[2025-07-26 18:09:48] 2025-07-26 22:09:17,441 | INFO     | --- collectZombieJob: --- 10, [794236]
[2025-07-26 18:09:48] 2025-07-26 22:09:17,442 | INFO     | zombie collector waiting for pid 794236
[2025-07-26 18:09:48] 2025-07-26 22:09:17,442 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 18:09:48] 2025-07-26 22:09:17,442 | INFO     | collected zombie processes
[2025-07-26 18:09:48] 2025-07-26 22:09:17,442 | INFO     | will attempt to kill all subprocesses of pid=794236
[2025-07-26 18:09:48] 2025-07-26 22:09:17,856 | INFO     | process IDs to be killed: [794236] (in reverse order)
[2025-07-26 18:09:48] 2025-07-26 22:09:18,007 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 18:09:48] 2025-07-26 22:09:18,009 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 18:09:48] 2025-07-26 22:09:18,027 | INFO     | did not find any defunct processes belonging to 794236
[2025-07-26 18:09:48] 2025-07-26 22:09:18,042 | INFO     | did not find any defunct processes belonging to 794236
[2025-07-26 18:09:48] 2025-07-26 22:09:18,042 | INFO     | ready for new job
[2025-07-26 18:09:48] 2025-07-26 22:09:18,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 18:09:48] 2025-07-26 22:09:18,044 | INFO     | ***************************************
[2025-07-26 18:09:48] 2025-07-26 22:09:18,044 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 18:09:48] 2025-07-26 22:09:18,044 | INFO     | ***************************************
[2025-07-26 18:09:48] 2025-07-26 22:09:18,044 | INFO     | 
[2025-07-26 18:09:48] 2025-07-26 22:09:18,062 | INFO     | architecture information:
[2025-07-26 18:09:48] 2025-07-26 22:09:18,062 | INFO     | executing command: cat /etc/os-release
[2025-07-26 18:09:48] 2025-07-26 22:09:18,077 | INFO     | cat /etc/os-release:
[2025-07-26 18:09:48] NAME="CentOS Linux"
[2025-07-26 18:09:48] VERSION="7 (Core)"
[2025-07-26 18:09:48] ID="centos"
[2025-07-26 18:09:48] ID_LIKE="rhel fedora"
[2025-07-26 18:09:48] VERSION_ID="7"
[2025-07-26 18:09:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 18:09:48] ANSI_COLOR="0;31"
[2025-07-26 18:09:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 18:09:48] HOME_URL="https://www.centos.org/"
[2025-07-26 18:09:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 18:09:48] 
[2025-07-26 18:09:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 18:09:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 18:09:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 18:09:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 18:09:48] 
[2025-07-26 18:09:48] 2025-07-26 22:09:18,077 | INFO     | ***************************************
[2025-07-26 18:09:48] 2025-07-26 22:09:18,580 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-26 18:09:48] 2025-07-26 22:09:18,597 | INFO     | sufficient remaining disk space (75808899072 B)
[2025-07-26 18:09:48] 2025-07-26 22:09:18,597 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 18:09:48] 2025-07-26 22:09:18,597 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 18:09:48] 2025-07-26 22:09:18,597 | INFO     | update_server=False
[2025-07-26 18:09:48] 2025-07-26 22:09:18,597 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 18:09:48] 2025-07-26 22:09:18,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 18:09:48] 2025-07-26 22:09:18,600 | INFO     | all payload control threads have been joined
[2025-07-26 18:09:48] 2025-07-26 22:09:18,895 | INFO     | all data control threads have been joined
[2025-07-26 18:09:48] 2025-07-26 22:09:18,950 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 18:09:48] 2025-07-26 22:09:18,950 | INFO     | aborting loop
[2025-07-26 18:09:48] 2025-07-26 22:09:19,598 | INFO     | [job] retrieve thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:19,600 | INFO     | [payload] control thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:19,710 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 18:09:48] 2025-07-26 22:09:19,734 | INFO     | [payload] failed_post thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:19,758 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:19,814 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:19,901 | INFO     | [data] control thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:19,953 | INFO     | [data] copytool_in thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:19,955 | INFO     | [job] job monitor thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:20,111 | INFO     | all job control threads have been joined
[2025-07-26 18:09:48] 2025-07-26 22:09:20,111 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:20,602 | INFO     | [data] copytool_out thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:20,765 | INFO     | [payload] validate_post thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:20,942 | INFO     | [job] validate thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:20,996 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:21,115 | INFO     | [job] control thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:21,420 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 18:09:48] 2025-07-26 22:09:22,424 | INFO     | [job] queue monitor thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:23,717 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 18:09:48] 2025-07-26 22:09:23,906 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140164494051136)>', '<ExcThread(monitor, started 140163699173120)>']
[2025-07-26 18:09:48] 2025-07-26 22:09:28,907 | INFO     | all workflow threads have been joined
[2025-07-26 18:09:48] 2025-07-26 22:09:28,909 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 18:09:48] 2025-07-26 22:09:28,910 | INFO     | traces error code: 0
[2025-07-26 18:09:48] 2025-07-26 22:09:28,910 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 18:09:48] 2025-07-26 22:09:48,397 | INFO     | PID=785380 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 18:09:48] 2025-07-26 22:09:48,397 | INFO     | .. there are 22 such processes running
[2025-07-26 18:09:48] 2025-07-26 22:09:48,398 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 18:09:48] 2025-07-26 22:09:48,398 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 18:09:48] 2025-07-26 22:09:48,398 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 18:09:48] 2025-07-26 22:09:48,398 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 18:09:48] 2025-07-26 22:09:48,398 | INFO     | [monitor] control thread has ended
[2025-07-26 18:09:48] 2025-07-26 22:09:48,495 [wrapper] ==== pilot stdout END ====
[2025-07-26 18:09:48] 2025-07-26 22:09:48,500 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 18:09:48] 2025-07-26 22:09:48,504 [wrapper] pilotpid: 785380
[2025-07-26 18:09:48] 2025-07-26 22:09:48,507 [wrapper] Pilot exit status: 0
[2025-07-26 18:09:48] 2025-07-26 22:09:48,525 [wrapper] pandaids: 6745229652
[2025-07-26 18:09:48] 2025-07-26 22:09:48,631 [wrapper] cleanup supervisor_pilot 1227043 785381
[2025-07-26 18:09:48] 2025-07-26 22:09:48,635 [wrapper] Test setup, not cleaning
[2025-07-26 18:09:48] 2025-07-26 22:09:48,638 [wrapper] apfmon messages muted
[2025-07-26 18:09:48] 2025-07-26 22:09:48,642 [wrapper] ==== wrapper stdout END ====
[2025-07-26 18:09:48] 2025-07-26 22:09:48,645 [wrapper] ==== wrapper stderr END ====
[2025-07-26 18:09:48]  *** Error codes and diagnostics ***
[2025-07-26 18:09:48]     "exeErrorCode": 0,
[2025-07-26 18:09:48]     "exeErrorDiag": "",
[2025-07-26 18:09:48]     "pilotErrorCode": 0,
[2025-07-26 18:09:48]     "pilotErrorDiag": "",
[2025-07-26 18:09:48]  *** Listing of results directory ***
[2025-07-26 18:09:48] total 433776
[2025-07-26 18:09:48] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 10:40 pilot3.tar.gz
[2025-07-26 18:09:48] -rwx------. 1 boincer umatlas     36292 Jul 26 10:53 runpilot2-wrapper.sh
[2025-07-26 18:09:48] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 10:53 queuedata.json
[2025-07-26 18:09:48] -rw-r--r--. 1 boincer umatlas       100 Jul 26 16:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 18:09:48] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 16:14 run_atlas
[2025-07-26 18:09:48] -rw-r--r--. 1 boincer umatlas       105 Jul 26 16:14 job.xml
[2025-07-26 18:09:48] -rw-r--r--. 2 boincer umatlas 230837010 Jul 26 16:14 EVNT.45743347._002257.pool.root.1
[2025-07-26 18:09:48] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 16:14 shared
[2025-07-26 18:09:48] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 16:14 input.tar.gz
[2025-07-26 18:09:48] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 16:14 start_atlas.sh
[2025-07-26 18:09:48] -rw-r--r--. 1 boincer umatlas         0 Jul 26 16:14 boinc_lockfile
[2025-07-26 18:09:48] -rw-r--r--. 1 boincer umatlas      2561 Jul 26 16:14 pandaJob.out
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas    980125 Jul 26 16:14 agis_schedconf.cvmfs.json
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas   1593052 Jul 26 16:14 agis_ddmendpoints.agis.ALL.json
[2025-07-26 18:09:48] drwx------. 4 boincer umatlas      4096 Jul 26 16:14 pilot3
[2025-07-26 18:09:48] -rw-r--r--. 1 boincer umatlas      6931 Jul 26 18:04 init_data.xml
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas 207588756 Jul 26 18:08 HITS.45743349._039617.pool.root.1
[2025-07-26 18:09:48] -rw-r--r--. 1 boincer umatlas       530 Jul 26 18:08 boinc_task_state.xml
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas      1030 Jul 26 18:09 memory_monitor_summary.json
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas    313677 Jul 26 18:09 log.45743349._039617.job.log.tgz.1
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas        95 Jul 26 18:09 pilot_heartbeat.json
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas      7773 Jul 26 18:09 heartbeat.json
[2025-07-26 18:09:48] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 18:09 boinc_mmap_file
[2025-07-26 18:09:48] -rw-r--r--. 1 boincer umatlas        27 Jul 26 18:09 wrapper_checkpoint.txt
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas       822 Jul 26 18:09 pilotlog.txt
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas    634847 Jul 26 18:09 log.45743349._039617.job.log.1
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas       357 Jul 26 18:09 output.list
[2025-07-26 18:09:48] -rw-r--r--. 1 boincer umatlas       620 Jul 26 18:09 runtime_log
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas    962560 Jul 26 18:09 result.tar.gz
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas       651 Jul 26 18:09 7l1KDmRSvz7n9Rq4apOajLDm4fhM0noT9bVof3QYDm2v0KDmvrm8in.diag
[2025-07-26 18:09:48] -rw-r--r--. 1 boincer umatlas      8655 Jul 26 18:09 runtime_log.err
[2025-07-26 18:09:48] -rw-r--r--. 1 boincer umatlas     21235 Jul 26 18:09 stderr.txt
[2025-07-26 18:09:48] HITS file was successfully produced:
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas 207588756 Jul 26 18:08 shared/HITS.pool.root.1
[2025-07-26 18:09:48]  *** Contents of shared directory: ***
[2025-07-26 18:09:48] total 429644
[2025-07-26 18:09:48] -rw-r--r--. 2 boincer umatlas 230837010 Jul 26 16:14 ATLAS.root_0
[2025-07-26 18:09:48] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 16:14 input.tar.gz
[2025-07-26 18:09:48] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 16:14 start_atlas.sh
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas 207588756 Jul 26 18:08 HITS.pool.root.1
[2025-07-26 18:09:48] -rw-------. 1 boincer umatlas    962560 Jul 26 18:09 result.tar.gz
18:09:50 (781710): run_atlas exited; CPU time 38545.583806
18:09:50 (781710): called boinc_finish(0)

</stderr_txt>
]]>

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