Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
08:59:15 (545304): wrapper (7.7.26015): starting
08:59:15 (545304): wrapper: running run_atlas (--nthreads 3)
[2025-07-27 08:59:15] Arguments: --nthreads 3
[2025-07-27 08:59:15] Threads: 3
[2025-07-27 08:59:15] Checking for CVMFS
[2025-07-27 08:59:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 08:59:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 08:59:15] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 08:59:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 08:59:15] 2.9.2.0 2836443 3728 82612 148803 0 57 21113775 36864000 0 130560 0 2757548 99.990 135426 1557 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-07-27 08:59:15] CVMFS is ok
[2025-07-27 08:59:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 08:59:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 08:59:15] Further information can be found at the LHC@home message board.
[2025-07-27 08:59:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 08:59:15] Checking for apptainer binary...
[2025-07-27 08:59:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 08:59:15] Running /usr/bin/apptainer --version
[2025-07-27 08:59:15] apptainer version 1.3.6-6.1
[2025-07-27 08:59:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 08:59:15] atlasA303
[2025-07-27 08:59:15] apptainer works
[2025-07-27 08:59:15] Set ATHENA_PROC_NUMBER=3
[2025-07-27 08:59:15] Set ATHENA_CORE_NUMBER=3
[2025-07-27 08:59:15] Starting ATLAS job with PandaID=6745229541
[2025-07-27 08:59:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 10:33:14]  *** The last 200 lines of the pilot log: ***
[2025-07-27 10:33:14]  protocol_id=None
[2025-07-27 10:33:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 10:33:14]  replicas=None
[2025-07-27 10:33:14]  scope=mc23_13p6TeV
[2025-07-27 10:33:14]  status=None
[2025-07-27 10:33:14]  status_code=0
[2025-07-27 10:33:14]  storage_token=
[2025-07-27 10:33:14]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6745229541/log.45743349._039506.job.log.tgz.1
[2025-07-27 10:33:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/c3/log.45743349._039506.job.log.tgz.1
[2025-07-27 10:33:14]  workdir=None
[2025-07-27 10:33:14] ]
[2025-07-27 10:33:14] 2025-07-27 08:32:33,916 | INFO     | transferring file log.45743349._039506.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6745229541/log.45743349._039506.job.log.tgz.1 to /local/data/boinc/
[2025-07-27 10:33:14] 2025-07-27 08:32:33,916 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6745229541/log.45743349._039506.job.log.tgz.1 /local/data/boinc/slots/0/log.45743349._0395
[2025-07-27 10:33:14] 2025-07-27 08:32:33,930 | INFO     | adding to output.list: log.45743349._039506.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/00/c3/log.45743349._039506.job.log.tg
[2025-07-27 10:33:14] 2025-07-27 08:32:33,930 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 10:33:14] 2025-07-27 08:32:33,930 | INFO     | summary of transferred files:
[2025-07-27 10:33:14] 2025-07-27 08:32:33,930 | INFO     |  -- lfn=log.45743349._039506.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 10:33:14] 2025-07-27 08:32:33,930 | INFO     | stage-out finished correctly
[2025-07-27 10:33:14] 2025-07-27 08:32:35,864 | WARNING  | process 555555 can no longer be monitored (due to stat problems) - aborting
[2025-07-27 10:33:14] 2025-07-27 08:32:35,864 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745229541/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 10:33:14] 2025-07-27 08:32:35,904 | INFO     | number of running child processes to parent process 555555: 1
[2025-07-27 10:33:14] 2025-07-27 08:32:35,904 | INFO     | maximum number of monitored processes: 6
[2025-07-27 10:33:14] 2025-07-27 08:32:36,222 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 10:33:14] 2025-07-27 08:32:36,315 | INFO     | PID=548967 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 10:33:14] 2025-07-27 08:32:38,407 | INFO     | monitor loop #430: job 0:6745229541 is in state 'finished'
[2025-07-27 10:33:14] 2025-07-27 08:32:38,408 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 10:33:14] 2025-07-27 08:32:39,107 | INFO     | job 6745229541 has state=finished
[2025-07-27 10:33:14] 2025-07-27 08:32:39,107 | INFO     | preparing for final server update for job 6745229541 in state='finished'
[2025-07-27 10:33:14] 2025-07-27 08:32:39,107 | INFO     | this job has now completed (state=finished)
[2025-07-27 10:33:14] 2025-07-27 08:32:39,107 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 10:33:14] 2025-07-27 08:32:39,108 | INFO     | log transfer has been attempted: DONE
[2025-07-27 10:33:14] 2025-07-27 08:32:39,108 | INFO     | job 6745229541 has finished - writing final server update
[2025-07-27 10:33:14] 2025-07-27 08:32:39,108 | INFO     | total number of processed events: 400 (read)
[2025-07-27 10:33:14] 2025-07-27 08:32:39,108 | INFO     | executing command: lscpu
[2025-07-27 10:33:14] 2025-07-27 08:32:39,124 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 10:33:14] 2025-07-27 08:32:40,911 | INFO     | monitor loop #431: job 0:6745229541 is in state 'finished'
[2025-07-27 10:33:14] 2025-07-27 08:32:40,911 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 10:33:14] 2025-07-27 08:32:41,565 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 10:33:14] 2025-07-27 08:32:41,566 | INFO     | found 6 cores (6 cores per socket, 1 socket) HT, CPU MHz: 3737.5723333333335
[2025-07-27 10:33:14] 2025-07-27 08:32:41,567 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6745229541/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 10:33:14] 2025-07-27 08:32:41,567 | INFO     | extracted standard info from prmon json
[2025-07-27 10:33:14] 2025-07-27 08:32:41,567 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 10:33:14] 2025-07-27 08:32:41,567 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 10:33:14] 2025-07-27 08:32:41,567 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 10:33:14] 2025-07-27 08:32:41,567 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 10:33:14] 2025-07-27 08:32:41,568 | INFO     | fitting pss+swap vs Time
[2025-07-27 10:33:14] 2025-07-27 08:32:41,568 | INFO     | sum of square deviations: 190403570.0
[2025-07-27 10:33:14] 2025-07-27 08:32:41,568 | INFO     | sum of deviations: -6209218486.999999
[2025-07-27 10:33:14] 2025-07-27 08:32:41,568 | INFO     | mean x: 1753602449.0
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | mean y: 2396633.4235294117
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | -- intersect: 57188828301.58643
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | intersect: 57188828301.58643
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | chi2: 0.08830152975290788
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | -- intersect: 57188828301.58643
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | current memory leak: -32.61 B/s (using 85 data points, chi2=0.09)
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | could have reported an average CPU frequency of 3939 MHz (7 samples)
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | ..............................
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | . Timing measurements:
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | . get job = 0 s
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | . initial setup = 1 s
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | . payload setup = 3 s
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | . stage-in = 0 s
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | . payload execution = 5571 s
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | . stage-out = 0 s
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | . log creation = 0 s
[2025-07-27 10:33:14] 2025-07-27 08:32:41,569 | INFO     | ..............................
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | 
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | job summary report
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | --------------------------------------------------
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | PanDA job id: 6745229541
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | task id: 45743349
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | errors: (none)
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | pilot state: finished 
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | transexitcode: 0
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | exeerrorcode: 0
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | exeerrordiag: 
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | exitcode: 0
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | exitmsg: OK
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | cpuconsumptiontime: 16117 s
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | nevents: 400
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | neventsw: 0
[2025-07-27 10:33:14] 2025-07-27 08:32:41,849 | INFO     | pid: 555555
[2025-07-27 10:33:14] 2025-07-27 08:32:41,850 | INFO     | pgrp: 555555
[2025-07-27 10:33:14] 2025-07-27 08:32:41,850 | INFO     | corecount: 3
[2025-07-27 10:33:14] 2025-07-27 08:32:41,850 | INFO     | event service: False
[2025-07-27 10:33:14] 2025-07-27 08:32:41,850 | INFO     | sizes: {0: 2397427, 3: 2397689, 11: 2397717, 5578: 2424469, 5579: 2433528, 5581: 2433528, 5587: 2433850}
[2025-07-27 10:33:14] 2025-07-27 08:32:41,850 | INFO     | --------------------------------------------------
[2025-07-27 10:33:14] 2025-07-27 08:32:41,850 | INFO     | 
[2025-07-27 10:33:14] 2025-07-27 08:32:41,850 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-07-27 10:33:14] 2025-07-27 08:32:41,865 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,865 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,865 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | job 6745229541 has completed (purged errors)
[2025-07-27 10:33:14] 2025-07-27 08:32:41,866 | INFO     | overall cleanup function is called
[2025-07-27 10:33:14] 2025-07-27 08:32:42,872 | INFO     | --- collectZombieJob: --- 10, [555555]
[2025-07-27 10:33:14] 2025-07-27 08:32:42,873 | INFO     | zombie collector waiting for pid 555555
[2025-07-27 10:33:14] 2025-07-27 08:32:42,873 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 10:33:14] 2025-07-27 08:32:42,873 | INFO     | collected zombie processes
[2025-07-27 10:33:14] 2025-07-27 08:32:42,873 | INFO     | will attempt to kill all subprocesses of pid=555555
[2025-07-27 10:33:14] 2025-07-27 08:32:42,917 | INFO     | process IDs to be killed: [555555] (in reverse order)
[2025-07-27 10:33:14] 2025-07-27 08:32:42,942 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 10:33:14] 2025-07-27 08:32:42,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 10:33:14] 2025-07-27 08:32:42,944 | INFO     | did not find any defunct processes belonging to 555555
[2025-07-27 10:33:14] 2025-07-27 08:32:42,945 | INFO     | did not find any defunct processes belonging to 555555
[2025-07-27 10:33:14] 2025-07-27 08:32:42,945 | INFO     | ready for new job
[2025-07-27 10:33:14] 2025-07-27 08:32:42,945 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 10:33:14] 2025-07-27 08:32:42,945 | INFO     | ***************************************
[2025-07-27 10:33:14] 2025-07-27 08:32:42,945 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 10:33:14] 2025-07-27 08:32:42,945 | INFO     | ***************************************
[2025-07-27 10:33:14] 2025-07-27 08:32:42,945 | INFO     | 
[2025-07-27 10:33:14] 2025-07-27 08:32:42,946 | INFO     | architecture information:
[2025-07-27 10:33:14] 2025-07-27 08:32:42,946 | INFO     | executing command: cat /etc/os-release
[2025-07-27 10:33:14] 2025-07-27 08:32:42,955 | INFO     | cat /etc/os-release:
[2025-07-27 10:33:14] NAME="CentOS Linux"
[2025-07-27 10:33:14] VERSION="7 (Core)"
[2025-07-27 10:33:14] ID="centos"
[2025-07-27 10:33:14] ID_LIKE="rhel fedora"
[2025-07-27 10:33:14] VERSION_ID="7"
[2025-07-27 10:33:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 10:33:14] ANSI_COLOR="0;31"
[2025-07-27 10:33:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 10:33:14] HOME_URL="https://www.centos.org/"
[2025-07-27 10:33:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 10:33:14] 
[2025-07-27 10:33:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 10:33:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 10:33:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 10:33:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 10:33:14] 
[2025-07-27 10:33:14] 2025-07-27 08:32:42,955 | INFO     | ***************************************
[2025-07-27 10:33:14] 2025-07-27 08:32:43,458 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-07-27 10:33:14] 2025-07-27 08:32:43,472 | INFO     | sufficient remaining disk space (379776401408 B)
[2025-07-27 10:33:14] 2025-07-27 08:32:43,472 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 10:33:14] 2025-07-27 08:32:43,472 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 10:33:14] 2025-07-27 08:32:43,472 | INFO     | update_server=False
[2025-07-27 10:33:14] 2025-07-27 08:32:43,472 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 10:33:14] 2025-07-27 08:32:43,473 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 10:33:14] 2025-07-27 08:32:43,954 | INFO     | all data control threads have been joined
[2025-07-27 10:33:14] 2025-07-27 08:32:44,115 | INFO     | all payload control threads have been joined
[2025-07-27 10:33:14] 2025-07-27 08:32:44,420 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 10:33:14] 2025-07-27 08:32:44,420 | INFO     | aborting loop
[2025-07-27 10:33:14] 2025-07-27 08:32:44,476 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 10:33:14] 2025-07-27 08:32:44,478 | INFO     | [job] retrieve thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:44,478 | INFO     | [job] queue monitor thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:44,542 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:44,618 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:44,868 | INFO     | all job control threads have been joined
[2025-07-27 10:33:14] 2025-07-27 08:32:44,960 | INFO     | [data] control thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:45,014 | INFO     | [payload] failed_post thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:45,121 | INFO     | [payload] control thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:45,426 | INFO     | [job] job monitor thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:45,544 | INFO     | [payload] validate_post thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:45,548 | INFO     | [data] copytool_in thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:45,874 | INFO     | [job] control thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:45,891 | INFO     | [job] validate thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:45,943 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:46,482 | INFO     | [data] copytool_out thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:46,766 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 10:33:14] 2025-07-27 08:32:50,773 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:54,325 | INFO     | job.realtimelogging is not enabled
[2025-07-27 10:33:14] 2025-07-27 08:32:55,331 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 10:33:14] 2025-07-27 08:32:56,840 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139662365144896)>', '<ExcThread(monitor, started 139661573867264)>']
[2025-07-27 10:33:14] 2025-07-27 08:33:01,866 | INFO     | all workflow threads have been joined
[2025-07-27 10:33:14] 2025-07-27 08:33:01,866 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 10:33:14] 2025-07-27 08:33:01,866 | INFO     | traces error code: 0
[2025-07-27 10:33:14] 2025-07-27 08:33:01,867 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 10:33:14] 2025-07-27 08:33:14,463 | INFO     | PID=548967 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-27 10:33:14] 2025-07-27 08:33:14,464 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 10:33:14] 2025-07-27 08:33:14,464 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 10:33:14] 2025-07-27 08:33:14,464 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 10:33:14] 2025-07-27 08:33:14,464 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 10:33:14] 2025-07-27 08:33:14,464 | INFO     | [monitor] control thread has ended
[2025-07-27 10:33:14] 2025-07-27 08:33:14,511 [wrapper] ==== pilot stdout END ====
[2025-07-27 10:33:14] 2025-07-27 08:33:14,514 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 10:33:14] 2025-07-27 08:33:14,517 [wrapper] pilotpid: 548967
[2025-07-27 10:33:14] 2025-07-27 08:33:14,519 [wrapper] Pilot exit status: 0
[2025-07-27 10:33:14] 2025-07-27 08:33:14,527 [wrapper] pandaids: 6745229541
[2025-07-27 10:33:14] 2025-07-27 08:33:14,544 [wrapper] cleanup supervisor_pilot  589069 548968
[2025-07-27 10:33:14] 2025-07-27 08:33:14,547 [wrapper] Test setup, not cleaning
[2025-07-27 10:33:14] 2025-07-27 08:33:14,549 [wrapper] apfmon messages muted
[2025-07-27 10:33:14] 2025-07-27 08:33:14,552 [wrapper] ==== wrapper stdout END ====
[2025-07-27 10:33:14] 2025-07-27 08:33:14,554 [wrapper] ==== wrapper stderr END ====
[2025-07-27 10:33:14]  *** Error codes and diagnostics ***
[2025-07-27 10:33:14]     "exeErrorCode": 0,
[2025-07-27 10:33:14]     "exeErrorDiag": "",
[2025-07-27 10:33:14]     "pilotErrorCode": 0,
[2025-07-27 10:33:14]     "pilotErrorDiag": "",
[2025-07-27 10:33:14]  *** Listing of results directory ***
[2025-07-27 10:33:14] total 432636
[2025-07-27 10:33:14] -rw-r--r-- 1 boinc boinc    530466 Jul 26 16:40 pilot3.tar.gz
[2025-07-27 10:33:14] -rw-r--r-- 1 boinc boinc      5112 Jul 26 16:45 queuedata.json
[2025-07-27 10:33:14] -rwx------ 1 boinc boinc     36292 Jul 26 16:45 runpilot2-wrapper.sh
[2025-07-27 10:33:14] -rw-r--r-- 1 boinc boinc       100 Jul 27 08:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 10:33:14] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 08:59 run_atlas
[2025-07-27 10:33:14] -rw-r--r-- 1 boinc boinc       105 Jul 27 08:59 job.xml
[2025-07-27 10:33:14] -rw-r--r-- 2 boinc boinc 228105189 Jul 27 08:59 EVNT.45743347._002252.pool.root.1
[2025-07-27 10:33:14] -rw-r--r-- 1 boinc boinc      6932 Jul 27 08:59 init_data.xml
[2025-07-27 10:33:14] drwxrwx--x 2 boinc boinc      4096 Jul 27 08:59 shared
[2025-07-27 10:33:14] -rw-r--r-- 2 boinc boinc    542894 Jul 27 08:59 input.tar.gz
[2025-07-27 10:33:14] -rw-r--r-- 2 boinc boinc     15095 Jul 27 08:59 start_atlas.sh
[2025-07-27 10:33:14] -rw-r--r-- 1 boinc boinc         0 Jul 27 08:59 boinc_lockfile
[2025-07-27 10:33:14] -rw-r--r-- 1 boinc boinc      2562 Jul 27 08:59 pandaJob.out
[2025-07-27 10:33:14] -rw------- 1 boinc boinc    980125 Jul 27 08:59 agis_schedconf.cvmfs.json
[2025-07-27 10:33:14] -rw------- 1 boinc boinc   1593052 Jul 27 08:59 agis_ddmendpoints.agis.ALL.json
[2025-07-27 10:33:14] drwx------ 4 boinc boinc      4096 Jul 27 08:59 pilot3
[2025-07-27 10:33:14] -rw------- 1 boinc boinc 209477617 Jul 27 10:32 HITS.45743349._039506.pool.root.1
[2025-07-27 10:33:14] -rw-r--r-- 1 boinc boinc       529 Jul 27 10:32 boinc_task_state.xml
[2025-07-27 10:33:14] -rw------- 1 boinc boinc      1017 Jul 27 10:32 memory_monitor_summary.json
[2025-07-27 10:33:14] -rw------- 1 boinc boinc    241838 Jul 27 10:32 log.45743349._039506.job.log.tgz.1
[2025-07-27 10:33:14] -rw------- 1 boinc boinc      7749 Jul 27 10:32 heartbeat.json
[2025-07-27 10:33:14] -rw-r--r-- 1 boinc boinc      8192 Jul 27 10:32 boinc_mmap_file
[2025-07-27 10:33:14] -rw-r--r-- 1 boinc boinc        27 Jul 27 10:32 wrapper_checkpoint.txt
[2025-07-27 10:33:14] -rw------- 1 boinc boinc       746 Jul 27 10:33 pilotlog.txt
[2025-07-27 10:33:14] -rw------- 1 boinc boinc        95 Jul 27 10:33 pilot_heartbeat.json
[2025-07-27 10:33:14] -rw------- 1 boinc boinc    538984 Jul 27 10:33 log.45743349._039506.job.log.1
[2025-07-27 10:33:14] -rw------- 1 boinc boinc       357 Jul 27 10:33 output.list
[2025-07-27 10:33:14] -rw-r--r-- 1 boinc boinc       620 Jul 27 10:33 runtime_log
[2025-07-27 10:33:14] -rw------- 1 boinc boinc    798720 Jul 27 10:33 result.tar.gz
[2025-07-27 10:33:14] -rw-r--r-- 1 boinc boinc      8749 Jul 27 10:33 runtime_log.err
[2025-07-27 10:33:14] -rw------- 1 boinc boinc       661 Jul 27 10:33 qHEODmmKvz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwNSLDm5YwL6n.diag
[2025-07-27 10:33:14] -rw-r--r-- 1 boinc boinc     21924 Jul 27 10:33 stderr.txt
[2025-07-27 10:33:14] HITS file was successfully produced:
[2025-07-27 10:33:14] -rw------- 1 boinc boinc 209477617 Jul 27 10:32 shared/HITS.pool.root.1
[2025-07-27 10:33:14]  *** Contents of shared directory: ***
[2025-07-27 10:33:14] total 428664
[2025-07-27 10:33:14] -rw-r--r-- 2 boinc boinc 228105189 Jul 27 08:59 ATLAS.root_0
[2025-07-27 10:33:14] -rw-r--r-- 2 boinc boinc    542894 Jul 27 08:59 input.tar.gz
[2025-07-27 10:33:14] -rw-r--r-- 2 boinc boinc     15095 Jul 27 08:59 start_atlas.sh
[2025-07-27 10:33:14] -rw------- 1 boinc boinc 209477617 Jul 27 10:32 HITS.pool.root.1
[2025-07-27 10:33:14] -rw------- 1 boinc boinc    798720 Jul 27 10:33 result.tar.gz
10:33:16 (545304): run_atlas exited; CPU time 16135.782511
10:33:16 (545304): called boinc_finish(0)

</stderr_txt>
]]>

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