Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:03:29 (19018): wrapper (7.7.26015): starting
16:03:29 (19018): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 16:03:29] Arguments: --nthreads 12
[2025-07-26 16:03:29] Threads: 12
[2025-07-26 16:03:29] Checking for CVMFS
[2025-07-26 16:03:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 16:03:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 16:03:29] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 16:03:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 16:03:29] 2.11.2.0 3087 110972 103408 148787 0 57 18283797 20275201 1 130560 0 39101955 99.974 9086711 10342 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 16:03:29] CVMFS is ok
[2025-07-26 16:03:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 16:03:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 16:03:29] Further information can be found at the LHC@home message board.
[2025-07-26 16:03:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 16:03:29] Checking for apptainer binary...
[2025-07-26 16:03:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 16:03:29] Running /usr/bin/apptainer --version
[2025-07-26 16:03:29] apptainer version 1.3.2-1.el7
[2025-07-26 16:03:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 16:03:31] c-115-42.aglt2.org
[2025-07-26 16:03:31] apptainer works
[2025-07-26 16:03:31] Set ATHENA_PROC_NUMBER=12
[2025-07-26 16:03:31] Set ATHENA_CORE_NUMBER=12
[2025-07-26 16:03:31] Starting ATLAS job with PandaID=6745350770
[2025-07-26 16:03:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 17:18:23]  *** The last 200 lines of the pilot log: ***
[2025-07-26 17:18:23]  protocol_id=None
[2025-07-26 17:18:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 17:18:23]  replicas=None
[2025-07-26 17:18:23]  scope=mc23_13p6TeV
[2025-07-26 17:18:23]  status=None
[2025-07-26 17:18:23]  status_code=0
[2025-07-26 17:18:23]  storage_token=
[2025-07-26 17:18:23]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745350770/log.45743349._041688.job.log.tgz.1
[2025-07-26 17:18:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6e/9c/log.45743349._041688.job.log.tgz.1
[2025-07-26 17:18:23]  workdir=None
[2025-07-26 17:18:23] ]
[2025-07-26 17:18:23] 2025-07-26 21:17:57,072 | INFO     | transferring file log.45743349._041688.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745350770/log.45743349._041688.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 17:18:23] 2025-07-26 21:17:57,072 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745350770/log.45743349._041688.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._041688.job
[2025-07-26 17:18:23] 2025-07-26 21:17:57,095 | INFO     | adding to output.list: log.45743349._041688.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6e/9c/log.45743349._041688.job.log.tg
[2025-07-26 17:18:23] 2025-07-26 21:17:57,096 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 17:18:23] 2025-07-26 21:17:57,096 | INFO     | summary of transferred files:
[2025-07-26 17:18:23] 2025-07-26 21:17:57,096 | INFO     |  -- lfn=log.45743349._041688.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 17:18:23] 2025-07-26 21:17:57,096 | INFO     | stage-out finished correctly
[2025-07-26 17:18:23] 2025-07-26 21:17:57,177 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 17:18:23] 2025-07-26 21:17:58,102 | INFO     | job 6745350770 has state=finished
[2025-07-26 17:18:23] 2025-07-26 21:17:58,110 | INFO     | preparing for final server update for job 6745350770 in state='finished'
[2025-07-26 17:18:23] 2025-07-26 21:17:58,111 | INFO     | this job has now completed (state=finished)
[2025-07-26 17:18:23] 2025-07-26 21:17:58,111 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 17:18:23] 2025-07-26 21:17:58,111 | INFO     | log transfer has been attempted: DONE
[2025-07-26 17:18:23] 2025-07-26 21:17:58,112 | INFO     | job 6745350770 has finished - writing final server update
[2025-07-26 17:18:23] 2025-07-26 21:17:58,112 | INFO     | total number of processed events: 400 (read)
[2025-07-26 17:18:23] 2025-07-26 21:17:58,113 | INFO     | executing command: lscpu
[2025-07-26 17:18:23] 2025-07-26 21:17:58,138 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 17:18:23] 2025-07-26 21:17:58,273 | INFO     | monitor loop #334: job 0:6745350770 is in state 'finished'
[2025-07-26 17:18:23] 2025-07-26 21:17:58,273 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:18:23] 2025-07-26 21:18:00,689 | INFO     | PID=22603 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 17:18:23] 2025-07-26 21:18:00,776 | INFO     | monitor loop #335: job 0:6745350770 is in state 'finished'
[2025-07-26 17:18:23] 2025-07-26 21:18:00,776 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:18:23] 2025-07-26 21:18:03,279 | INFO     | monitor loop #336: job 0:6745350770 is in state 'finished'
[2025-07-26 17:18:23] 2025-07-26 21:18:03,279 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:18:23] 2025-07-26 21:18:03,667 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-26 17:18:23] 2025-07-26 21:18:03,671 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-07-26 17:18:23] 2025-07-26 21:18:03,673 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745350770/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 17:18:23] 2025-07-26 21:18:03,676 | INFO     | extracted standard info from prmon json
[2025-07-26 17:18:23] 2025-07-26 21:18:03,676 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 17:18:23] 2025-07-26 21:18:03,676 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 17:18:23] 2025-07-26 21:18:03,676 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 17:18:23] 2025-07-26 21:18:03,676 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 17:18:23] 2025-07-26 21:18:03,678 | INFO     | fitting pss+swap vs Time
[2025-07-26 17:18:23] 2025-07-26 21:18:03,679 | INFO     | sum of square deviations: 89127252.5
[2025-07-26 17:18:23] 2025-07-26 21:18:03,679 | INFO     | sum of deviations: -1714987092.4999993
[2025-07-26 17:18:23] 2025-07-26 21:18:03,679 | INFO     | mean x: 1753562541.5
[2025-07-26 17:18:23] 2025-07-26 21:18:03,680 | INFO     | mean y: 2714164.3484848486
[2025-07-26 17:18:23] 2025-07-26 21:18:03,680 | INFO     | -- intersect: 33744774423.23501
[2025-07-26 17:18:23] 2025-07-26 21:18:03,680 | INFO     | intersect: 33744774423.23501
[2025-07-26 17:18:23] 2025-07-26 21:18:03,680 | INFO     | chi2: 0.044870029028530954
[2025-07-26 17:18:23] 2025-07-26 21:18:03,680 | INFO     | -- intersect: 33744774423.23501
[2025-07-26 17:18:23] 2025-07-26 21:18:03,680 | INFO     | current memory leak: -19.24 B/s (using 66 data points, chi2=0.04)
[2025-07-26 17:18:23] 2025-07-26 21:18:03,681 | INFO     | could have reported an average CPU frequency of 2145 MHz (6 samples)
[2025-07-26 17:18:23] 2025-07-26 21:18:03,681 | INFO     | ..............................
[2025-07-26 17:18:23] 2025-07-26 21:18:03,681 | INFO     | . Timing measurements:
[2025-07-26 17:18:23] 2025-07-26 21:18:03,681 | INFO     | . get job = 0 s
[2025-07-26 17:18:23] 2025-07-26 21:18:03,681 | INFO     | . initial setup = 2 s
[2025-07-26 17:18:23] 2025-07-26 21:18:03,682 | INFO     | . payload setup = 9 s
[2025-07-26 17:18:23] 2025-07-26 21:18:03,682 | INFO     | . stage-in = 0 s
[2025-07-26 17:18:23] 2025-07-26 21:18:03,682 | INFO     | . payload execution = 4423 s
[2025-07-26 17:18:23] 2025-07-26 21:18:03,682 | INFO     | . stage-out = 0 s
[2025-07-26 17:18:23] 2025-07-26 21:18:03,682 | INFO     | . log creation = 0 s
[2025-07-26 17:18:23] 2025-07-26 21:18:03,682 | INFO     | ..............................
[2025-07-26 17:18:23] 2025-07-26 21:18:03,758 | INFO     | 
[2025-07-26 17:18:23] 2025-07-26 21:18:03,758 | INFO     | job summary report
[2025-07-26 17:18:23] 2025-07-26 21:18:03,758 | INFO     | --------------------------------------------------
[2025-07-26 17:18:23] 2025-07-26 21:18:03,758 | INFO     | PanDA job id: 6745350770
[2025-07-26 17:18:23] 2025-07-26 21:18:03,759 | INFO     | task id: 45743349
[2025-07-26 17:18:23] 2025-07-26 21:18:03,759 | INFO     | errors: (none)
[2025-07-26 17:18:23] 2025-07-26 21:18:03,759 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 17:18:23] 2025-07-26 21:18:03,759 | INFO     | pilot state: finished 
[2025-07-26 17:18:23] 2025-07-26 21:18:03,759 | INFO     | transexitcode: 0
[2025-07-26 17:18:23] 2025-07-26 21:18:03,759 | INFO     | exeerrorcode: 0
[2025-07-26 17:18:23] 2025-07-26 21:18:03,760 | INFO     | exeerrordiag: 
[2025-07-26 17:18:23] 2025-07-26 21:18:03,760 | INFO     | exitcode: 0
[2025-07-26 17:18:23] 2025-07-26 21:18:03,760 | INFO     | exitmsg: OK
[2025-07-26 17:18:23] 2025-07-26 21:18:03,760 | INFO     | cpuconsumptiontime: 47907 s
[2025-07-26 17:18:23] 2025-07-26 21:18:03,760 | INFO     | nevents: 400
[2025-07-26 17:18:23] 2025-07-26 21:18:03,760 | INFO     | neventsw: 0
[2025-07-26 17:18:23] 2025-07-26 21:18:03,760 | INFO     | pid: 29158
[2025-07-26 17:18:23] 2025-07-26 21:18:03,761 | INFO     | pgrp: 29158
[2025-07-26 17:18:23] 2025-07-26 21:18:03,761 | INFO     | corecount: 12
[2025-07-26 17:18:23] 2025-07-26 21:18:03,761 | INFO     | event service: False
[2025-07-26 17:18:23] 2025-07-26 21:18:03,761 | INFO     | sizes: {0: 2397475, 1: 2397503, 5: 2397765, 11: 2397821, 4435: 2423899, 4438: 2433081, 4444: 2433219}
[2025-07-26 17:18:23] 2025-07-26 21:18:03,761 | INFO     | --------------------------------------------------
[2025-07-26 17:18:23] 2025-07-26 21:18:03,761 | INFO     | 
[2025-07-26 17:18:23] 2025-07-26 21:18:03,762 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 17:18:23] 2025-07-26 21:18:03,786 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,787 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,787 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,787 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,787 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,787 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,788 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,788 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,788 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,788 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,788 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,788 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,789 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,789 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,789 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,789 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,789 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,790 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 17:18:23] 2025-07-26 21:18:03,790 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,790 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 17:18:23] 2025-07-26 21:18:03,790 | INFO     | job 6745350770 has completed (purged errors)
[2025-07-26 17:18:23] 2025-07-26 21:18:03,790 | INFO     | overall cleanup function is called
[2025-07-26 17:18:23] 2025-07-26 21:18:04,799 | INFO     | --- collectZombieJob: --- 10, [29158]
[2025-07-26 17:18:23] 2025-07-26 21:18:04,799 | INFO     | zombie collector waiting for pid 29158
[2025-07-26 17:18:23] 2025-07-26 21:18:04,799 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 17:18:23] 2025-07-26 21:18:04,799 | INFO     | collected zombie processes
[2025-07-26 17:18:23] 2025-07-26 21:18:04,799 | INFO     | will attempt to kill all subprocesses of pid=29158
[2025-07-26 17:18:23] 2025-07-26 21:18:04,888 | INFO     | process IDs to be killed: [29158] (in reverse order)
[2025-07-26 17:18:23] 2025-07-26 21:18:04,938 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 17:18:23] 2025-07-26 21:18:04,939 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 17:18:23] 2025-07-26 21:18:04,943 | INFO     | did not find any defunct processes belonging to 29158
[2025-07-26 17:18:23] 2025-07-26 21:18:04,946 | INFO     | did not find any defunct processes belonging to 29158
[2025-07-26 17:18:23] 2025-07-26 21:18:04,946 | INFO     | ready for new job
[2025-07-26 17:18:23] 2025-07-26 21:18:04,946 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 17:18:23] 2025-07-26 21:18:04,947 | INFO     | ***************************************
[2025-07-26 17:18:23] 2025-07-26 21:18:04,947 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 17:18:23] 2025-07-26 21:18:04,947 | INFO     | ***************************************
[2025-07-26 17:18:23] 2025-07-26 21:18:04,948 | INFO     | 
[2025-07-26 17:18:23] 2025-07-26 21:18:04,948 | INFO     | architecture information:
[2025-07-26 17:18:23] 2025-07-26 21:18:04,949 | INFO     | executing command: cat /etc/os-release
[2025-07-26 17:18:23] 2025-07-26 21:18:04,965 | INFO     | cat /etc/os-release:
[2025-07-26 17:18:23] NAME="CentOS Linux"
[2025-07-26 17:18:23] VERSION="7 (Core)"
[2025-07-26 17:18:23] ID="centos"
[2025-07-26 17:18:23] ID_LIKE="rhel fedora"
[2025-07-26 17:18:23] VERSION_ID="7"
[2025-07-26 17:18:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 17:18:23] ANSI_COLOR="0;31"
[2025-07-26 17:18:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 17:18:23] HOME_URL="https://www.centos.org/"
[2025-07-26 17:18:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 17:18:23] 
[2025-07-26 17:18:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 17:18:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 17:18:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 17:18:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 17:18:23] 
[2025-07-26 17:18:23] 2025-07-26 21:18:04,965 | INFO     | ***************************************
[2025-07-26 17:18:23] 2025-07-26 21:18:05,468 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 17:18:23] 2025-07-26 21:18:05,487 | INFO     | sufficient remaining disk space (18753781760 B)
[2025-07-26 17:18:23] 2025-07-26 21:18:05,488 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 17:18:23] 2025-07-26 21:18:05,488 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 17:18:23] 2025-07-26 21:18:05,488 | INFO     | update_server=False
[2025-07-26 17:18:23] 2025-07-26 21:18:05,488 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 17:18:23] 2025-07-26 21:18:05,489 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 17:18:23] 2025-07-26 21:18:05,489 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-07-26 17:18:23] 2025-07-26 21:18:05,489 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 17:18:23] 2025-07-26 21:18:05,490 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 17:18:23] 2025-07-26 21:18:05,490 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 17:18:23] 2025-07-26 21:18:05,490 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 17:18:23] 2025-07-26 21:18:05,619 | INFO     | all job control threads have been joined
[2025-07-26 17:18:23] 2025-07-26 21:18:05,782 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-26 17:18:23] 2025-07-26 21:18:05,782 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-26 17:18:23] 2025-07-26 21:18:05,782 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 17:18:23] 2025-07-26 21:18:05,783 | INFO     | will abort loop
[2025-07-26 17:18:23] 2025-07-26 21:18:05,860 | INFO     | all data control threads have been joined
[2025-07-26 17:18:23] 2025-07-26 21:18:06,494 | INFO     | [job] retrieve thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:06,495 | INFO     | [job] queue monitor thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:06,529 | INFO     | all payload control threads have been joined
[2025-07-26 17:18:23] 2025-07-26 21:18:06,594 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:06,626 | INFO     | [job] control thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:06,659 | INFO     | [data] copytool_in thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:06,788 | INFO     | [job] job monitor thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:06,866 | INFO     | [data] control thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:07,373 | INFO     | [job] validate thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:07,391 | INFO     | [payload] validate_post thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:07,495 | INFO     | [data] copytool_out thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:07,535 | INFO     | [payload] control thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:07,599 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:07,646 | INFO     | [payload] failed_post thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:07,657 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:07,760 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 17:18:23] 2025-07-26 21:18:11,766 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:16,112 | INFO     | job.realtimelogging is not enabled
[2025-07-26 17:18:23] 2025-07-26 21:18:17,117 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 17:18:23] 2025-07-26 21:18:17,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140362251945792)>', '<ExcThread(monitor, started 140362024810240)>']
[2025-07-26 17:18:23] 2025-07-26 21:18:18,553 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 17:18:23] 2025-07-26 21:18:18,553 | INFO     | [monitor] control thread has ended
[2025-07-26 17:18:23] 2025-07-26 21:18:22,779 | INFO     | all workflow threads have been joined
[2025-07-26 17:18:23] 2025-07-26 21:18:22,779 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 17:18:23] 2025-07-26 21:18:22,780 | INFO     | traces error code: 0
[2025-07-26 17:18:23] 2025-07-26 21:18:22,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 17:18:23] 2025-07-26 21:18:22,866 [wrapper] ==== pilot stdout END ====
[2025-07-26 17:18:23] 2025-07-26 21:18:22,870 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 17:18:23] 2025-07-26 21:18:22,874 [wrapper] pilotpid: 22603
[2025-07-26 17:18:23] 2025-07-26 21:18:22,877 [wrapper] Pilot exit status: 0
[2025-07-26 17:18:23] 2025-07-26 21:18:22,893 [wrapper] pandaids: 6745350770
[2025-07-26 17:18:23] 2025-07-26 21:18:22,932 [wrapper] cleanup supervisor_pilot 25202 22604
[2025-07-26 17:18:23] 2025-07-26 21:18:22,935 [wrapper] Test setup, not cleaning
[2025-07-26 17:18:23] 2025-07-26 21:18:22,939 [wrapper] apfmon messages muted
[2025-07-26 17:18:23] 2025-07-26 21:18:22,943 [wrapper] ==== wrapper stdout END ====
[2025-07-26 17:18:23] 2025-07-26 21:18:22,947 [wrapper] ==== wrapper stderr END ====
[2025-07-26 17:18:23]  *** Error codes and diagnostics ***
[2025-07-26 17:18:23]     "exeErrorCode": 0,
[2025-07-26 17:18:23]     "exeErrorDiag": "",
[2025-07-26 17:18:23]     "pilotErrorCode": 0,
[2025-07-26 17:18:23]     "pilotErrorDiag": "",
[2025-07-26 17:18:23]  *** Listing of results directory ***
[2025-07-26 17:18:23] total 344812
[2025-07-26 17:18:23] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 13:33 pilot3.tar.gz
[2025-07-26 17:18:23] -rwx------ 1 boincer umatlas     36292 Jul 26 13:35 runpilot2-wrapper.sh
[2025-07-26 17:18:23] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 13:35 queuedata.json
[2025-07-26 17:18:23] -rw-r--r-- 1 boincer umatlas       100 Jul 26 16:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 17:18:23] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 16:03 run_atlas
[2025-07-26 17:18:23] -rw-r--r-- 1 boincer umatlas       105 Jul 26 16:03 job.xml
[2025-07-26 17:18:23] -rw-r--r-- 2 boincer umatlas 141689085 Jul 26 16:03 EVNT.45743347._002353.pool.root.1
[2025-07-26 17:18:23] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 16:03 start_atlas.sh
[2025-07-26 17:18:23] drwxrwx--x 2 boincer umatlas      4096 Jul 26 16:03 shared
[2025-07-26 17:18:23] -rw-r--r-- 2 boincer umatlas    542895 Jul 26 16:03 input.tar.gz
[2025-07-26 17:18:23] -rw-r--r-- 1 boincer umatlas         0 Jul 26 16:03 boinc_lockfile
[2025-07-26 17:18:23] -rw-r--r-- 1 boincer umatlas      2563 Jul 26 16:03 pandaJob.out
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas    980125 Jul 26 16:03 agis_schedconf.cvmfs.json
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas   1593052 Jul 26 16:03 agis_ddmendpoints.agis.ALL.json
[2025-07-26 17:18:23] drwx------ 4 boincer umatlas      4096 Jul 26 16:03 pilot3
[2025-07-26 17:18:23] -rw-r--r-- 1 boincer umatlas      5869 Jul 26 17:13 init_data.xml
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas 205946247 Jul 26 17:17 HITS.45743349._041688.pool.root.1
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas        95 Jul 26 17:17 pilot_heartbeat.json
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas      1048 Jul 26 17:17 memory_monitor_summary.json
[2025-07-26 17:18:23] -rw-r--r-- 1 boincer umatlas       529 Jul 26 17:17 boinc_task_state.xml
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas    355502 Jul 26 17:17 log.45743349._041688.job.log.tgz.1
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas      7849 Jul 26 17:18 heartbeat.json
[2025-07-26 17:18:23] -rw-r--r-- 1 boincer umatlas        27 Jul 26 17:18 wrapper_checkpoint.txt
[2025-07-26 17:18:23] -rw-r--r-- 1 boincer umatlas      8192 Jul 26 17:18 boinc_mmap_file
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas      4738 Jul 26 17:18 pilotlog.txt
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas    430228 Jul 26 17:18 log.45743349._041688.job.log.1
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas       357 Jul 26 17:18 output.list
[2025-07-26 17:18:23] -rw-r--r-- 1 boincer umatlas       620 Jul 26 17:18 runtime_log
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas    808960 Jul 26 17:18 result.tar.gz
[2025-07-26 17:18:23] -rw-r--r-- 1 boincer umatlas      8662 Jul 26 17:18 runtime_log.err
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas       659 Jul 26 17:18 6e2MDmsyxz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmK90KDmU7ew3m.diag
[2025-07-26 17:18:23] -rw-r--r-- 1 boincer umatlas     21809 Jul 26 17:18 stderr.txt
[2025-07-26 17:18:23] HITS file was successfully produced:
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas 205946247 Jul 26 17:17 shared/HITS.pool.root.1
[2025-07-26 17:18:23]  *** Contents of shared directory: ***
[2025-07-26 17:18:23] total 340832
[2025-07-26 17:18:23] -rw-r--r-- 2 boincer umatlas 141689085 Jul 26 16:03 ATLAS.root_0
[2025-07-26 17:18:23] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 16:03 start_atlas.sh
[2025-07-26 17:18:23] -rw-r--r-- 2 boincer umatlas    542895 Jul 26 16:03 input.tar.gz
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas 205946247 Jul 26 17:17 HITS.pool.root.1
[2025-07-26 17:18:23] -rw------- 1 boincer umatlas    808960 Jul 26 17:18 result.tar.gz
17:18:24 (19018): run_atlas exited; CPU time 47885.969331
17:18:24 (19018): called boinc_finish(0)

</stderr_txt>
]]>

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