Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:04:58 (5657): wrapper (7.7.26015): starting
16:04:58 (5657): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 16:04:58] Arguments: --nthreads 8
[2025-07-26 16:04:58] Threads: 8
[2025-07-26 16:04:58] Checking for CVMFS
[2025-07-26 16:04:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 16:04:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 16:04:58] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 16:04:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 16:04:58] 2.11.2.0 3213 515955 243828 148787 3 188 19900530 20275201 917 130560 0 178262186 99.988 22502173 19698 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 16:04:58] CVMFS is ok
[2025-07-26 16:04:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 16:04:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 16:04:58] Further information can be found at the LHC@home message board.
[2025-07-26 16:04:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 16:04:58] Checking for apptainer binary...
[2025-07-26 16:04:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 16:04:58] Running /usr/bin/apptainer --version
[2025-07-26 16:04:58] apptainer version 1.3.2-1.el7
[2025-07-26 16:04:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 16:04:59] c-205-38.aglt2.org
[2025-07-26 16:04:59] apptainer works
[2025-07-26 16:04:59] Set ATHENA_PROC_NUMBER=8
[2025-07-26 16:04:59] Set ATHENA_CORE_NUMBER=8
[2025-07-26 16:04:59] Starting ATLAS job with PandaID=6745229260
[2025-07-26 16:04:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 17:07:40]  *** The last 200 lines of the pilot log: ***
[2025-07-26 17:07:40]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-26 17:07:40]  is_altstaged=None
[2025-07-26 17:07:40]  is_tar=False
[2025-07-26 17:07:40]  lfn=log.45743349._039331.job.log.tgz.1
[2025-07-26 17:07:40]  mtime=0
[2025-07-26 17:07:40]  protocol_id=None
[2025-07-26 17:07:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 17:07:40]  replicas=None
[2025-07-26 17:07:40]  scope=mc23_13p6TeV
[2025-07-26 17:07:40]  status=None
[2025-07-26 17:07:40]  status_code=0
[2025-07-26 17:07:40]  storage_token=
[2025-07-26 17:07:40]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6745229260/log.45743349._039331.job.log.tgz.1
[2025-07-26 17:07:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/bf/log.45743349._039331.job.log.tgz.1
[2025-07-26 17:07:40]  workdir=None
[2025-07-26 17:07:40] ]
[2025-07-26 17:07:40] 2025-07-26 21:07:03,097 | INFO     | transferring file log.45743349._039331.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6745229260/log.45743349._039331.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 17:07:40] 2025-07-26 21:07:03,098 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6745229260/log.45743349._039331.job.log.tgz.1 /tmp/boinchome/slots/1/log.45743349._039331.job
[2025-07-26 17:07:40] 2025-07-26 21:07:03,115 | INFO     | adding to output.list: log.45743349._039331.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/bf/log.45743349._039331.job.log.tg
[2025-07-26 17:07:40] 2025-07-26 21:07:03,116 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 17:07:40] 2025-07-26 21:07:03,116 | INFO     | summary of transferred files:
[2025-07-26 17:07:40] 2025-07-26 21:07:03,116 | INFO     |  -- lfn=log.45743349._039331.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 17:07:40] 2025-07-26 21:07:03,116 | INFO     | stage-out finished correctly
[2025-07-26 17:07:40] 2025-07-26 21:07:03,174 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 17:07:40] 2025-07-26 21:07:04,049 | INFO     | monitor loop #283: job 0:6745229260 is in state 'finished'
[2025-07-26 17:07:40] 2025-07-26 21:07:04,049 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:07:40] 2025-07-26 21:07:05,103 | INFO     | job 6745229260 has state=finished
[2025-07-26 17:07:40] 2025-07-26 21:07:05,103 | INFO     | preparing for final server update for job 6745229260 in state='finished'
[2025-07-26 17:07:40] 2025-07-26 21:07:05,104 | INFO     | this job has now completed (state=finished)
[2025-07-26 17:07:40] 2025-07-26 21:07:05,104 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 17:07:40] 2025-07-26 21:07:05,104 | INFO     | log transfer has been attempted: DONE
[2025-07-26 17:07:40] 2025-07-26 21:07:05,104 | INFO     | job 6745229260 has finished - writing final server update
[2025-07-26 17:07:40] 2025-07-26 21:07:05,104 | INFO     | total number of processed events: 400 (read)
[2025-07-26 17:07:40] 2025-07-26 21:07:05,105 | INFO     | executing command: lscpu
[2025-07-26 17:07:40] 2025-07-26 21:07:05,135 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 17:07:40] 2025-07-26 21:07:06,552 | INFO     | monitor loop #284: job 0:6745229260 is in state 'finished'
[2025-07-26 17:07:40] 2025-07-26 21:07:06,552 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 17:07:40] 2025-07-26 21:07:07,525 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 17:07:40] 2025-07-26 21:07:07,528 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2740.1974374999995
[2025-07-26 17:07:40] 2025-07-26 21:07:07,531 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6745229260/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 17:07:40] 2025-07-26 21:07:07,531 | INFO     | extracted standard info from prmon json
[2025-07-26 17:07:40] 2025-07-26 21:07:07,532 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 17:07:40] 2025-07-26 21:07:07,532 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 17:07:40] 2025-07-26 21:07:07,532 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 17:07:40] 2025-07-26 21:07:07,532 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 17:07:40] 2025-07-26 21:07:07,533 | INFO     | fitting pss+swap vs Time
[2025-07-26 17:07:40] 2025-07-26 21:07:07,534 | INFO     | sum of square deviations: 48810217.5
[2025-07-26 17:07:40] 2025-07-26 21:07:07,534 | INFO     | sum of deviations: -687896755.9999999
[2025-07-26 17:07:40] 2025-07-26 21:07:07,534 | INFO     | mean x: 1753562248.5
[2025-07-26 17:07:40] 2025-07-26 21:07:07,534 | INFO     | mean y: 2529793.777777778
[2025-07-26 17:07:40] 2025-07-26 21:07:07,534 | INFO     | -- intersect: 24715998488.87662
[2025-07-26 17:07:40] 2025-07-26 21:07:07,534 | INFO     | intersect: 24715998488.87662
[2025-07-26 17:07:40] 2025-07-26 21:07:07,534 | INFO     | chi2: 0.009806839986500497
[2025-07-26 17:07:40] 2025-07-26 21:07:07,535 | INFO     | -- intersect: 24715998488.87662
[2025-07-26 17:07:40] 2025-07-26 21:07:07,535 | INFO     | current memory leak: -14.09 B/s (using 54 data points, chi2=0.01)
[2025-07-26 17:07:40] 2025-07-26 21:07:07,535 | INFO     | could have reported an average CPU frequency of 2958 MHz (6 samples)
[2025-07-26 17:07:40] 2025-07-26 21:07:07,535 | INFO     | ..............................
[2025-07-26 17:07:40] 2025-07-26 21:07:07,535 | INFO     | . Timing measurements:
[2025-07-26 17:07:40] 2025-07-26 21:07:07,535 | INFO     | . get job = 0 s
[2025-07-26 17:07:40] 2025-07-26 21:07:07,535 | INFO     | . initial setup = 2 s
[2025-07-26 17:07:40] 2025-07-26 21:07:07,535 | INFO     | . payload setup = 4 s
[2025-07-26 17:07:40] 2025-07-26 21:07:07,535 | INFO     | . stage-in = 0 s
[2025-07-26 17:07:40] 2025-07-26 21:07:07,535 | INFO     | . payload execution = 3693 s
[2025-07-26 17:07:40] 2025-07-26 21:07:07,536 | INFO     | . stage-out = 0 s
[2025-07-26 17:07:40] 2025-07-26 21:07:07,536 | INFO     | . log creation = 0 s
[2025-07-26 17:07:40] 2025-07-26 21:07:07,536 | INFO     | ..............................
[2025-07-26 17:07:40] 2025-07-26 21:07:07,599 | INFO     | 
[2025-07-26 17:07:40] 2025-07-26 21:07:07,599 | INFO     | job summary report
[2025-07-26 17:07:40] 2025-07-26 21:07:07,599 | INFO     | --------------------------------------------------
[2025-07-26 17:07:40] 2025-07-26 21:07:07,599 | INFO     | PanDA job id: 6745229260
[2025-07-26 17:07:40] 2025-07-26 21:07:07,599 | INFO     | task id: 45743349
[2025-07-26 17:07:40] 2025-07-26 21:07:07,599 | INFO     | errors: (none)
[2025-07-26 17:07:40] 2025-07-26 21:07:07,600 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 17:07:40] 2025-07-26 21:07:07,600 | INFO     | pilot state: finished 
[2025-07-26 17:07:40] 2025-07-26 21:07:07,600 | INFO     | transexitcode: 0
[2025-07-26 17:07:40] 2025-07-26 21:07:07,600 | INFO     | exeerrorcode: 0
[2025-07-26 17:07:40] 2025-07-26 21:07:07,600 | INFO     | exeerrordiag: 
[2025-07-26 17:07:40] 2025-07-26 21:07:07,600 | INFO     | exitcode: 0
[2025-07-26 17:07:40] 2025-07-26 21:07:07,600 | INFO     | exitmsg: OK
[2025-07-26 17:07:40] 2025-07-26 21:07:07,600 | INFO     | cpuconsumptiontime: 26406 s
[2025-07-26 17:07:40] 2025-07-26 21:07:07,601 | INFO     | nevents: 400
[2025-07-26 17:07:40] 2025-07-26 21:07:07,601 | INFO     | neventsw: 0
[2025-07-26 17:07:40] 2025-07-26 21:07:07,601 | INFO     | pid: 16676
[2025-07-26 17:07:40] 2025-07-26 21:07:07,601 | INFO     | pgrp: 16676
[2025-07-26 17:07:40] 2025-07-26 21:07:07,601 | INFO     | corecount: 8
[2025-07-26 17:07:40] 2025-07-26 21:07:07,601 | INFO     | event service: False
[2025-07-26 17:07:40] 2025-07-26 21:07:07,601 | INFO     | sizes: {0: 2397303, 1: 2397502, 3: 2397764, 11: 2397792, 3701: 2423659, 3703: 2432841, 3707: 2432979}
[2025-07-26 17:07:40] 2025-07-26 21:07:07,601 | INFO     | --------------------------------------------------
[2025-07-26 17:07:40] 2025-07-26 21:07:07,601 | INFO     | 
[2025-07-26 17:07:40] 2025-07-26 21:07:07,602 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-26 17:07:40] 2025-07-26 21:07:07,619 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,620 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,620 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,620 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,620 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,620 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,620 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,620 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,620 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,621 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,621 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,621 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,621 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,621 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,621 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,621 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,621 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,621 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 17:07:40] 2025-07-26 21:07:07,622 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,622 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 17:07:40] 2025-07-26 21:07:07,622 | INFO     | job 6745229260 has completed (purged errors)
[2025-07-26 17:07:40] 2025-07-26 21:07:07,622 | INFO     | overall cleanup function is called
[2025-07-26 17:07:40] 2025-07-26 21:07:08,630 | INFO     | --- collectZombieJob: --- 10, [16676]
[2025-07-26 17:07:40] 2025-07-26 21:07:08,630 | INFO     | zombie collector waiting for pid 16676
[2025-07-26 17:07:40] 2025-07-26 21:07:08,630 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 17:07:40] 2025-07-26 21:07:08,631 | INFO     | collected zombie processes
[2025-07-26 17:07:40] 2025-07-26 21:07:08,631 | INFO     | will attempt to kill all subprocesses of pid=16676
[2025-07-26 17:07:40] 2025-07-26 21:07:08,723 | INFO     | process IDs to be killed: [16676] (in reverse order)
[2025-07-26 17:07:40] 2025-07-26 21:07:08,773 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 17:07:40] 2025-07-26 21:07:08,774 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 17:07:40] 2025-07-26 21:07:08,776 | INFO     | did not find any defunct processes belonging to 16676
[2025-07-26 17:07:40] 2025-07-26 21:07:08,778 | INFO     | did not find any defunct processes belonging to 16676
[2025-07-26 17:07:40] 2025-07-26 21:07:08,778 | INFO     | ready for new job
[2025-07-26 17:07:40] 2025-07-26 21:07:08,778 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 17:07:40] 2025-07-26 21:07:08,780 | INFO     | ***************************************
[2025-07-26 17:07:40] 2025-07-26 21:07:08,780 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 17:07:40] 2025-07-26 21:07:08,780 | INFO     | ***************************************
[2025-07-26 17:07:40] 2025-07-26 21:07:08,780 | INFO     | 
[2025-07-26 17:07:40] 2025-07-26 21:07:08,781 | INFO     | architecture information:
[2025-07-26 17:07:40] 2025-07-26 21:07:08,781 | INFO     | executing command: cat /etc/os-release
[2025-07-26 17:07:40] 2025-07-26 21:07:08,794 | INFO     | cat /etc/os-release:
[2025-07-26 17:07:40] NAME="CentOS Linux"
[2025-07-26 17:07:40] VERSION="7 (Core)"
[2025-07-26 17:07:40] ID="centos"
[2025-07-26 17:07:40] ID_LIKE="rhel fedora"
[2025-07-26 17:07:40] VERSION_ID="7"
[2025-07-26 17:07:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 17:07:40] ANSI_COLOR="0;31"
[2025-07-26 17:07:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 17:07:40] HOME_URL="https://www.centos.org/"
[2025-07-26 17:07:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 17:07:40] 
[2025-07-26 17:07:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 17:07:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 17:07:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 17:07:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 17:07:40] 
[2025-07-26 17:07:40] 2025-07-26 21:07:08,794 | INFO     | ***************************************
[2025-07-26 17:07:40] 2025-07-26 21:07:09,297 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-26 17:07:40] 2025-07-26 21:07:09,311 | INFO     | sufficient remaining disk space (32913752064 B)
[2025-07-26 17:07:40] 2025-07-26 21:07:09,312 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 17:07:40] 2025-07-26 21:07:09,312 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 17:07:40] 2025-07-26 21:07:09,312 | INFO     | update_server=False
[2025-07-26 17:07:40] 2025-07-26 21:07:09,312 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 17:07:40] 2025-07-26 21:07:09,313 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 17:07:40] 2025-07-26 21:07:09,313 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 17:07:40] 2025-07-26 21:07:09,313 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 17:07:40] 2025-07-26 21:07:09,743 | INFO     | all data control threads have been joined
[2025-07-26 17:07:40] 2025-07-26 21:07:10,063 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 17:07:40] 2025-07-26 21:07:10,064 | INFO     | aborting loop
[2025-07-26 17:07:40] 2025-07-26 21:07:10,317 | INFO     | [job] retrieve thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:10,318 | INFO     | [job] queue monitor thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:10,329 | INFO     | all payload control threads have been joined
[2025-07-26 17:07:40] 2025-07-26 21:07:10,336 | INFO     | [payload] validate_post thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:10,595 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:10,596 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:10,618 | INFO     | all job control threads have been joined
[2025-07-26 17:07:40] 2025-07-26 21:07:10,748 | INFO     | [data] control thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:10,834 | INFO     | [payload] failed_post thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:11,065 | INFO     | [job] job monitor thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:11,252 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:11,319 | INFO     | [data] copytool_out thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:11,334 | INFO     | [payload] control thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:11,526 | INFO     | [data] copytool_in thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:11,617 | INFO     | [job] validate thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:11,617 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:11,623 | INFO     | [job] control thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:13,319 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 17:07:40] 2025-07-26 21:07:13,943 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140559366195008)>', '<ExcThread(monitor, started 140559071028992)>']
[2025-07-26 17:07:40] 2025-07-26 21:07:18,951 | INFO     | all workflow threads have been joined
[2025-07-26 17:07:40] 2025-07-26 21:07:18,951 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 17:07:40] 2025-07-26 21:07:18,952 | INFO     | traces error code: 0
[2025-07-26 17:07:40] 2025-07-26 21:07:18,952 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 17:07:40] 2025-07-26 21:07:40,049 | INFO     | PID=9741 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-26 17:07:40] 2025-07-26 21:07:40,050 | INFO     | .. there are 2 such processes running
[2025-07-26 17:07:40] 2025-07-26 21:07:40,050 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 17:07:40] 2025-07-26 21:07:40,050 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 17:07:40] 2025-07-26 21:07:40,050 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 17:07:40] 2025-07-26 21:07:40,050 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 17:07:40] 2025-07-26 21:07:40,050 | INFO     | [monitor] control thread has ended
[2025-07-26 17:07:40] 2025-07-26 21:07:40,141 [wrapper] ==== pilot stdout END ====
[2025-07-26 17:07:40] 2025-07-26 21:07:40,144 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 17:07:40] 2025-07-26 21:07:40,147 [wrapper] pilotpid: 9741
[2025-07-26 17:07:40] 2025-07-26 21:07:40,150 [wrapper] Pilot exit status: 0
[2025-07-26 17:07:40] 2025-07-26 21:07:40,159 [wrapper] pandaids: 6745229260
[2025-07-26 17:07:40] 2025-07-26 21:07:40,190 [wrapper] cleanup supervisor_pilot 27465 9742
[2025-07-26 17:07:40] 2025-07-26 21:07:40,194 [wrapper] Test setup, not cleaning
[2025-07-26 17:07:40] 2025-07-26 21:07:40,197 [wrapper] apfmon messages muted
[2025-07-26 17:07:40] 2025-07-26 21:07:40,199 [wrapper] ==== wrapper stdout END ====
[2025-07-26 17:07:40] 2025-07-26 21:07:40,202 [wrapper] ==== wrapper stderr END ====
[2025-07-26 17:07:40]  *** Error codes and diagnostics ***
[2025-07-26 17:07:40]     "exeErrorCode": 0,
[2025-07-26 17:07:40]     "exeErrorDiag": "",
[2025-07-26 17:07:40]     "pilotErrorCode": 0,
[2025-07-26 17:07:40]     "pilotErrorDiag": "",
[2025-07-26 17:07:40]  *** Listing of results directory ***
[2025-07-26 17:07:40] total 431592
[2025-07-26 17:07:40] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 10:04 pilot3.tar.gz
[2025-07-26 17:07:40] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 10:21 queuedata.json
[2025-07-26 17:07:40] -rwx------ 1 boincer umatlas     36292 Jul 26 10:23 runpilot2-wrapper.sh
[2025-07-26 17:07:40] -rw-r--r-- 1 boincer umatlas       100 Jul 26 16:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 17:07:40] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 16:04 run_atlas
[2025-07-26 17:07:40] -rw-r--r-- 1 boincer umatlas       105 Jul 26 16:04 job.xml
[2025-07-26 17:07:40] drwxrwx--x 2 boincer umatlas      4096 Jul 26 16:04 shared
[2025-07-26 17:07:40] -rw-r--r-- 2 boincer umatlas    542894 Jul 26 16:04 input.tar.gz
[2025-07-26 17:07:40] -rw-r--r-- 2 boincer umatlas 230670281 Jul 26 16:04 EVNT.45743347._002245.pool.root.1
[2025-07-26 17:07:40] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 16:04 start_atlas.sh
[2025-07-26 17:07:40] -rw-r--r-- 1 boincer umatlas         0 Jul 26 16:04 boinc_lockfile
[2025-07-26 17:07:40] -rw-r--r-- 1 boincer umatlas      2562 Jul 26 16:04 pandaJob.out
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas    980125 Jul 26 16:05 agis_schedconf.cvmfs.json
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas   1593052 Jul 26 16:05 agis_ddmendpoints.agis.ALL.json
[2025-07-26 17:07:40] drwx------ 4 boincer umatlas      4096 Jul 26 16:05 pilot3
[2025-07-26 17:07:40] -rw-r--r-- 1 boincer umatlas      6050 Jul 26 17:03 init_data.xml
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas 206030627 Jul 26 17:06 HITS.45743349._039331.pool.root.1
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas      1045 Jul 26 17:06 memory_monitor_summary.json
[2025-07-26 17:07:40] -rw-r--r-- 1 boincer umatlas       529 Jul 26 17:07 boinc_task_state.xml
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas    301549 Jul 26 17:07 log.45743349._039331.job.log.tgz.1
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas      7831 Jul 26 17:07 heartbeat.json
[2025-07-26 17:07:40] -rw-r--r-- 1 boincer umatlas        27 Jul 26 17:07 wrapper_checkpoint.txt
[2025-07-26 17:07:40] -rw-r--r-- 1 boincer umatlas      8192 Jul 26 17:07 boinc_mmap_file
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas        95 Jul 26 17:07 pilot_heartbeat.json
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas       819 Jul 26 17:07 pilotlog.txt
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas    385165 Jul 26 17:07 log.45743349._039331.job.log.1
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas       357 Jul 26 17:07 output.list
[2025-07-26 17:07:40] -rw-r--r-- 1 boincer umatlas       620 Jul 26 17:07 runtime_log
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas    706560 Jul 26 17:07 result.tar.gz
[2025-07-26 17:07:40] -rw-r--r-- 1 boincer umatlas      8660 Jul 26 17:07 runtime_log.err
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas       655 Jul 26 17:07 RumMDmwyuz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbLSLDmEMXX1m.diag
[2025-07-26 17:07:40] -rw-r--r-- 1 boincer umatlas     21419 Jul 26 17:07 stderr.txt
[2025-07-26 17:07:40] HITS file was successfully produced:
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas 206030627 Jul 26 17:06 shared/HITS.pool.root.1
[2025-07-26 17:07:40]  *** Contents of shared directory: ***
[2025-07-26 17:07:40] total 427712
[2025-07-26 17:07:40] -rw-r--r-- 2 boincer umatlas    542894 Jul 26 16:04 input.tar.gz
[2025-07-26 17:07:40] -rw-r--r-- 2 boincer umatlas 230670281 Jul 26 16:04 ATLAS.root_0
[2025-07-26 17:07:40] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 16:04 start_atlas.sh
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas 206030627 Jul 26 17:06 HITS.pool.root.1
[2025-07-26 17:07:40] -rw------- 1 boincer umatlas    706560 Jul 26 17:07 result.tar.gz
17:07:41 (5657): run_atlas exited; CPU time 26385.665134
17:07:41 (5657): called boinc_finish(0)

</stderr_txt>
]]>

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