Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:42:31 (171812): wrapper (7.7.26015): starting
15:42:31 (171812): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 15:42:31] Arguments: --nthreads 8
[2025-07-26 15:42:31] Threads: 8
[2025-07-26 15:42:31] Checking for CVMFS
[2025-07-26 15:42:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 15:42:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 15:42:31] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 15:42:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 15:42:32] 2.13.1.0 3153527 7366 147540 148787 1 188 22091468 40960001 12841 16776704 0 98218255 99.999 266466 58294 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 15:42:32] CVMFS is ok
[2025-07-26 15:42:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 15:42:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 15:42:32] Further information can be found at the LHC@home message board.
[2025-07-26 15:42:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 15:42:32] Checking for apptainer binary...
[2025-07-26 15:42:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 15:42:32] Running /usr/bin/apptainer --version
[2025-07-26 15:42:32] apptainer version 1.4.1-1.el9
[2025-07-26 15:42:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 15:42:32] c-208-37.aglt2.org
[2025-07-26 15:42:32] apptainer works
[2025-07-26 15:42:32] Set ATHENA_PROC_NUMBER=8
[2025-07-26 15:42:32] Set ATHENA_CORE_NUMBER=8
[2025-07-26 15:42:32] Starting ATLAS job with PandaID=6745229121
[2025-07-26 15:42:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 16:35:35]  *** The last 200 lines of the pilot log: ***
[2025-07-26 16:35:35]  lfn=log.45743349._039192.job.log.tgz.1
[2025-07-26 16:35:35]  mtime=0
[2025-07-26 16:35:35]  protocol_id=None
[2025-07-26 16:35:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 16:35:35]  replicas=None
[2025-07-26 16:35:35]  scope=mc23_13p6TeV
[2025-07-26 16:35:35]  status=None
[2025-07-26 16:35:35]  status_code=0
[2025-07-26 16:35:35]  storage_token=
[2025-07-26 16:35:35]  surl=/tmp/boinchome/slots/13/PanDA_Pilot-6745229121/log.45743349._039192.job.log.tgz.1
[2025-07-26 16:35:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/11/log.45743349._039192.job.log.tgz.1
[2025-07-26 16:35:35]  workdir=None
[2025-07-26 16:35:35] ]
[2025-07-26 16:35:35] 2025-07-26 20:34:56,357 | INFO     | transferring file log.45743349._039192.job.log.tgz.1 from /tmp/boinchome/slots/13/PanDA_Pilot-6745229121/log.45743349._039192.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-26 16:35:35] 2025-07-26 20:34:56,357 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/13/PanDA_Pilot-6745229121/log.45743349._039192.job.log.tgz.1 /tmp/boinchome/slots/13/log.45743349._039192.j
[2025-07-26 16:35:35] 2025-07-26 20:34:56,373 | INFO     | adding to output.list: log.45743349._039192.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/11/log.45743349._039192.job.log.tg
[2025-07-26 16:35:35] 2025-07-26 20:34:56,373 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 16:35:35] 2025-07-26 20:34:56,373 | INFO     | summary of transferred files:
[2025-07-26 16:35:35] 2025-07-26 20:34:56,373 | INFO     |  -- lfn=log.45743349._039192.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 16:35:35] 2025-07-26 20:34:56,373 | INFO     | stage-out finished correctly
[2025-07-26 16:35:35] 2025-07-26 20:34:57,273 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 16:35:35] 2025-07-26 20:34:58,365 | WARNING  | process 185166 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 16:35:35] 2025-07-26 20:34:58,365 | INFO     | using path: /tmp/boinchome/slots/13/PanDA_Pilot-6745229121/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 16:35:35] 2025-07-26 20:34:58,679 | INFO     | number of running child processes to parent process 185166: 1
[2025-07-26 16:35:35] 2025-07-26 20:34:58,679 | INFO     | maximum number of monitored processes: 6
[2025-07-26 16:35:35] 2025-07-26 20:34:59,553 | INFO     | job 6745229121 has state=finished
[2025-07-26 16:35:35] 2025-07-26 20:34:59,553 | INFO     | preparing for final server update for job 6745229121 in state='finished'
[2025-07-26 16:35:35] 2025-07-26 20:34:59,607 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-26 16:35:35] 2025-07-26 20:34:59,608 | INFO     | this job has now completed (state=finished)
[2025-07-26 16:35:35] 2025-07-26 20:34:59,608 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 16:35:35] 2025-07-26 20:34:59,608 | INFO     | log transfer has been attempted: DONE
[2025-07-26 16:35:35] 2025-07-26 20:34:59,608 | INFO     | job 6745229121 has finished - writing final server update
[2025-07-26 16:35:35] 2025-07-26 20:34:59,608 | INFO     | total number of processed events: 400 (read)
[2025-07-26 16:35:35] 2025-07-26 20:34:59,608 | INFO     | executing command: lscpu
[2025-07-26 16:35:35] 2025-07-26 20:34:59,662 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 16:35:35] 2025-07-26 20:35:01,182 | INFO     | monitor loop #233: job 0:6745229121 is in state 'finished'
[2025-07-26 16:35:35] 2025-07-26 20:35:01,183 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 16:35:35] 2025-07-26 20:35:02,889 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 16:35:35] 2025-07-26 20:35:02,894 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3726.5319296875014
[2025-07-26 16:35:35] 2025-07-26 20:35:02,907 | INFO     | using path: /tmp/boinchome/slots/13/PanDA_Pilot-6745229121/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 16:35:35] 2025-07-26 20:35:02,907 | INFO     | extracted standard info from prmon json
[2025-07-26 16:35:35] 2025-07-26 20:35:02,907 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 16:35:35] 2025-07-26 20:35:02,907 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 16:35:35] 2025-07-26 20:35:02,908 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 16:35:35] 2025-07-26 20:35:02,908 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 16:35:35] 2025-07-26 20:35:02,908 | INFO     | fitting pss+swap vs Time
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | sum of square deviations: 26400495.0
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | sum of deviations: -130188609.5
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | mean x: 1753560601.5
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | mean y: 2525906.4318181816
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | -- intersect: 8649849238.182552
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | intersect: 8649849238.182552
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | chi2: 0.00046636613181997834
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | -- intersect: 8649849238.182552
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | current memory leak: -4.93 B/s (using 44 data points, chi2=0.00)
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | could have reported an average CPU frequency of 3777 MHz (5 samples)
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | ..............................
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | . Timing measurements:
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | . get job = 0 s
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | . initial setup = 2 s
[2025-07-26 16:35:35] 2025-07-26 20:35:02,909 | INFO     | . payload setup = 5 s
[2025-07-26 16:35:35] 2025-07-26 20:35:02,910 | INFO     | . stage-in = 0 s
[2025-07-26 16:35:35] 2025-07-26 20:35:02,910 | INFO     | . payload execution = 3111 s
[2025-07-26 16:35:35] 2025-07-26 20:35:02,910 | INFO     | . stage-out = 0 s
[2025-07-26 16:35:35] 2025-07-26 20:35:02,910 | INFO     | . log creation = 0 s
[2025-07-26 16:35:35] 2025-07-26 20:35:02,910 | INFO     | ..............................
[2025-07-26 16:35:35] 2025-07-26 20:35:02,966 | INFO     | 
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | job summary report
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | --------------------------------------------------
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | PanDA job id: 6745229121
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | task id: 45743349
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | errors: (none)
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | pilot state: finished 
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | transexitcode: 0
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | exeerrorcode: 0
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | exeerrordiag: 
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | exitcode: 0
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | exitmsg: OK
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | cpuconsumptiontime: 23185 s
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | nevents: 400
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | neventsw: 0
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | pid: 185166
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | pgrp: 185166
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | corecount: 8
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | event service: False
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | sizes: {0: 2397474, 4: 2397736, 11: 2397764, 3120: 2423259, 3121: 2432315, 3127: 2432485}
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | --------------------------------------------------
[2025-07-26 16:35:35] 2025-07-26 20:35:02,967 | INFO     | 
[2025-07-26 16:35:35] 2025-07-26 20:35:02,968 | INFO     | executing command: ls -lF /tmp/boinchome/slots/13
[2025-07-26 16:35:35] 2025-07-26 20:35:02,979 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 16:35:35] 2025-07-26 20:35:02,980 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,981 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 16:35:35] 2025-07-26 20:35:02,981 | INFO     | job 6745229121 has completed (purged errors)
[2025-07-26 16:35:35] 2025-07-26 20:35:02,981 | INFO     | overall cleanup function is called
[2025-07-26 16:35:35] 2025-07-26 20:35:03,988 | INFO     | --- collectZombieJob: --- 10, [185166]
[2025-07-26 16:35:35] 2025-07-26 20:35:03,988 | INFO     | zombie collector waiting for pid 185166
[2025-07-26 16:35:35] 2025-07-26 20:35:03,988 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 16:35:35] 2025-07-26 20:35:03,988 | INFO     | collected zombie processes
[2025-07-26 16:35:35] 2025-07-26 20:35:03,988 | INFO     | will attempt to kill all subprocesses of pid=185166
[2025-07-26 16:35:35] 2025-07-26 20:35:04,311 | INFO     | process IDs to be killed: [185166] (in reverse order)
[2025-07-26 16:35:35] 2025-07-26 20:35:04,420 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 16:35:35] 2025-07-26 20:35:04,420 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 16:35:35] 2025-07-26 20:35:04,435 | INFO     | did not find any defunct processes belonging to 185166
[2025-07-26 16:35:35] 2025-07-26 20:35:04,446 | INFO     | did not find any defunct processes belonging to 185166
[2025-07-26 16:35:35] 2025-07-26 20:35:04,447 | INFO     | ready for new job
[2025-07-26 16:35:35] 2025-07-26 20:35:04,447 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 16:35:35] 2025-07-26 20:35:04,448 | INFO     | ***************************************
[2025-07-26 16:35:35] 2025-07-26 20:35:04,448 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 16:35:35] 2025-07-26 20:35:04,448 | INFO     | ***************************************
[2025-07-26 16:35:35] 2025-07-26 20:35:04,448 | INFO     | 
[2025-07-26 16:35:35] 2025-07-26 20:35:04,452 | INFO     | architecture information:
[2025-07-26 16:35:35] 2025-07-26 20:35:04,452 | INFO     | executing command: cat /etc/os-release
[2025-07-26 16:35:35] 2025-07-26 20:35:04,464 | INFO     | cat /etc/os-release:
[2025-07-26 16:35:35] NAME="CentOS Linux"
[2025-07-26 16:35:35] VERSION="7 (Core)"
[2025-07-26 16:35:35] ID="centos"
[2025-07-26 16:35:35] ID_LIKE="rhel fedora"
[2025-07-26 16:35:35] VERSION_ID="7"
[2025-07-26 16:35:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 16:35:35] ANSI_COLOR="0;31"
[2025-07-26 16:35:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 16:35:35] HOME_URL="https://www.centos.org/"
[2025-07-26 16:35:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 16:35:35] 
[2025-07-26 16:35:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 16:35:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 16:35:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 16:35:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 16:35:35] 
[2025-07-26 16:35:35] 2025-07-26 20:35:04,464 | INFO     | ***************************************
[2025-07-26 16:35:35] 2025-07-26 20:35:04,966 | INFO     | executing command: df -mP /tmp/boinchome/slots/13
[2025-07-26 16:35:35] 2025-07-26 20:35:04,980 | INFO     | sufficient remaining disk space (166238093312 B)
[2025-07-26 16:35:35] 2025-07-26 20:35:04,980 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 16:35:35] 2025-07-26 20:35:04,980 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 16:35:35] 2025-07-26 20:35:04,980 | INFO     | update_server=False
[2025-07-26 16:35:35] 2025-07-26 20:35:04,980 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 16:35:35] 2025-07-26 20:35:04,980 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 16:35:35] 2025-07-26 20:35:04,980 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 16:35:35] 2025-07-26 20:35:04,981 | INFO     | aborting loop
[2025-07-26 16:35:35] 2025-07-26 20:35:05,005 | INFO     | all payload control threads have been joined
[2025-07-26 16:35:35] 2025-07-26 20:35:05,101 | INFO     | all job control threads have been joined
[2025-07-26 16:35:35] 2025-07-26 20:35:05,985 | INFO     | [job] job monitor thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:05,985 | INFO     | [job] retrieve thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:06,010 | INFO     | [payload] control thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:06,014 | INFO     | all data control threads have been joined
[2025-07-26 16:35:35] 2025-07-26 20:35:06,106 | INFO     | [job] control thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:06,316 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:06,457 | INFO     | [data] copytool_in thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:06,520 | INFO     | [payload] validate_post thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:06,718 | INFO     | [payload] failed_post thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:06,853 | INFO     | [job] validate thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:06,972 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:06,986 | INFO     | [data] copytool_out thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:07,019 | INFO     | [data] control thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:07,118 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:07,370 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:07,833 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 16:35:35] 2025-07-26 20:35:07,977 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 16:35:35] 2025-07-26 20:35:08,983 | INFO     | [job] queue monitor thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:11,839 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 16:35:35] 2025-07-26 20:35:12,810 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139890702346048)>', '<ExcThread(monitor, started 139889651717888)>']
[2025-07-26 16:35:35] 2025-07-26 20:35:17,835 | INFO     | all workflow threads have been joined
[2025-07-26 16:35:35] 2025-07-26 20:35:17,835 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 16:35:35] 2025-07-26 20:35:17,835 | INFO     | traces error code: 0
[2025-07-26 16:35:35] 2025-07-26 20:35:17,835 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 16:35:35] 2025-07-26 20:35:35,599 | INFO     | PID=175828 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 16:35:35] 2025-07-26 20:35:35,599 | INFO     | .. there are 14 such processes running
[2025-07-26 16:35:35] 2025-07-26 20:35:35,599 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 16:35:35] 2025-07-26 20:35:35,599 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 16:35:35] 2025-07-26 20:35:35,599 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 16:35:35] 2025-07-26 20:35:35,599 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 16:35:35] 2025-07-26 20:35:35,599 | INFO     | [monitor] control thread has ended
[2025-07-26 16:35:35] 2025-07-26 20:35:35,675 [wrapper] ==== pilot stdout END ====
[2025-07-26 16:35:35] 2025-07-26 20:35:35,678 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 16:35:35] 2025-07-26 20:35:35,680 [wrapper] pilotpid: 175828
[2025-07-26 16:35:35] 2025-07-26 20:35:35,682 [wrapper] Pilot exit status: 0
[2025-07-26 16:35:35] 2025-07-26 20:35:35,690 [wrapper] pandaids: 6745229121
[2025-07-26 16:35:35] 2025-07-26 20:35:35,768 [wrapper] cleanup supervisor_pilot  441751 175829
[2025-07-26 16:35:35] 2025-07-26 20:35:35,771 [wrapper] Test setup, not cleaning
[2025-07-26 16:35:35] 2025-07-26 20:35:35,773 [wrapper] apfmon messages muted
[2025-07-26 16:35:35] 2025-07-26 20:35:35,776 [wrapper] ==== wrapper stdout END ====
[2025-07-26 16:35:35] 2025-07-26 20:35:35,778 [wrapper] ==== wrapper stderr END ====
[2025-07-26 16:35:35]  *** Error codes and diagnostics ***
[2025-07-26 16:35:35]     "exeErrorCode": 0,
[2025-07-26 16:35:35]     "exeErrorDiag": "",
[2025-07-26 16:35:35]     "pilotErrorCode": 0,
[2025-07-26 16:35:35]     "pilotErrorDiag": "",
[2025-07-26 16:35:35]  *** Listing of results directory ***
[2025-07-26 16:35:35] total 345344
[2025-07-26 16:35:35] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 10:04 pilot3.tar.gz
[2025-07-26 16:35:35] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 10:16 queuedata.json
[2025-07-26 16:35:35] -rwx------. 1 boincer umatlas     36292 Jul 26 10:17 runpilot2-wrapper.sh
[2025-07-26 16:35:35] -rw-r--r--. 1 boincer umatlas       100 Jul 26 15:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 16:35:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 15:42 run_atlas
[2025-07-26 16:35:35] -rw-r--r--. 1 boincer umatlas       105 Jul 26 15:42 job.xml
[2025-07-26 16:35:35] -rw-r--r--. 2 boincer umatlas 146242107 Jul 26 15:42 EVNT.45743347._002238.pool.root.1
[2025-07-26 16:35:35] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 15:42 start_atlas.sh
[2025-07-26 16:35:35] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 15:42 shared
[2025-07-26 16:35:35] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 15:42 input.tar.gz
[2025-07-26 16:35:35] -rw-r--r--. 1 boincer umatlas         0 Jul 26 15:42 boinc_lockfile
[2025-07-26 16:35:35] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 15:42 pandaJob.out
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas    980125 Jul 26 15:42 agis_schedconf.cvmfs.json
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas   1593052 Jul 26 15:42 agis_ddmendpoints.agis.ALL.json
[2025-07-26 16:35:35] drwx------. 4 boincer umatlas      4096 Jul 26 15:42 pilot3
[2025-07-26 16:35:35] -rw-r--r--. 1 boincer umatlas      7175 Jul 26 16:29 init_data.xml
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas 202301770 Jul 26 16:34 HITS.45743349._039192.pool.root.1
[2025-07-26 16:35:35] -rw-r--r--. 1 boincer umatlas       529 Jul 26 16:34 boinc_task_state.xml
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas        95 Jul 26 16:34 pilot_heartbeat.json
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas      1026 Jul 26 16:34 memory_monitor_summary.json
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas    278230 Jul 26 16:34 log.45743349._039192.job.log.tgz.1
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas      7758 Jul 26 16:35 heartbeat.json
[2025-07-26 16:35:35] -rw-r--r--. 1 boincer umatlas        27 Jul 26 16:35 wrapper_checkpoint.txt
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas       822 Jul 26 16:35 pilotlog.txt
[2025-07-26 16:35:35] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 16:35 boinc_mmap_file
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas    327552 Jul 26 16:35 log.45743349._039192.job.log.1
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas       357 Jul 26 16:35 output.list
[2025-07-26 16:35:35] -rw-r--r--. 1 boincer umatlas       620 Jul 26 16:35 runtime_log
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas    624640 Jul 26 16:35 result.tar.gz
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas       651 Jul 26 16:35 sebKDmWtuz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrKSLDm7SxFEm.diag
[2025-07-26 16:35:35] -rw-r--r--. 1 boincer umatlas      8674 Jul 26 16:35 runtime_log.err
[2025-07-26 16:35:35] -rw-r--r--. 1 boincer umatlas     21663 Jul 26 16:35 stderr.txt
[2025-07-26 16:35:35] HITS file was successfully produced:
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas 202301770 Jul 26 16:34 shared/HITS.pool.root.1
[2025-07-26 16:35:35]  *** Contents of shared directory: ***
[2025-07-26 16:35:35] total 341548
[2025-07-26 16:35:35] -rw-r--r--. 2 boincer umatlas 146242107 Jul 26 15:42 ATLAS.root_0
[2025-07-26 16:35:35] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 15:42 start_atlas.sh
[2025-07-26 16:35:35] -rw-r--r--. 2 boincer umatlas    542895 Jul 26 15:42 input.tar.gz
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas 202301770 Jul 26 16:34 HITS.pool.root.1
[2025-07-26 16:35:35] -rw-------. 1 boincer umatlas    624640 Jul 26 16:35 result.tar.gz
16:35:37 (171812): run_atlas exited; CPU time 23255.913696
16:35:37 (171812): called boinc_finish(0)

</stderr_txt>
]]>

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