Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:41:33 (29427): wrapper (7.7.26015): starting
10:41:33 (29427): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 10:41:33] Arguments: --nthreads 8
[2025-07-27 10:41:33] Threads: 8
[2025-07-27 10:41:33] Checking for CVMFS
[2025-07-27 10:41:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 10:41:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 10:41:37] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 10:41:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 10:41:38] 2.11.2.0 2191 109289 135616 148805 3 109 23106714 25165825 4353 130560 0 84596971 99.864 50074326 3568 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-07-27 10:41:38] CVMFS is ok
[2025-07-27 10:41:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 10:41:38] Checking for apptainer binary...
[2025-07-27 10:41:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 10:41:38] Running /usr/bin/apptainer --version
[2025-07-27 10:41:38] apptainer version 1.3.2-1.el7
[2025-07-27 10:41:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 10:41:49] cg-vwn409.simple-grid.lan
[2025-07-27 10:41:49] apptainer works
[2025-07-27 10:41:49] Set ATHENA_PROC_NUMBER=8
[2025-07-27 10:41:49] Set ATHENA_CORE_NUMBER=8
[2025-07-27 10:41:49] Starting ATLAS job with PandaID=6745134633
[2025-07-27 10:41:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:06:10]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:06:10] 2025-07-27 13:15:21,349 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:06:10] 2025-07-27 13:15:21,355 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:06:10] 2025-07-27 13:15:21,356 | INFO     | sum of square deviations: 5836025702.5
[2025-07-27 16:06:10] 2025-07-27 13:15:21,358 | INFO     | sum of deviations: -6002530722.999996
[2025-07-27 16:06:10] 2025-07-27 13:15:21,358 | INFO     | mean x: 1753613877.5
[2025-07-27 16:06:10] 2025-07-27 13:15:21,359 | INFO     | mean y: 2489357.037593985
[2025-07-27 16:06:10] 2025-07-27 13:15:21,359 | INFO     | -- intersect: 1806134802.167109
[2025-07-27 16:06:10] 2025-07-27 13:15:21,359 | INFO     | intersect: 1806134802.167109
[2025-07-27 16:06:10] 2025-07-27 13:15:21,359 | INFO     | chi2: 2.58188408903706
[2025-07-27 16:06:10] 2025-07-27 13:15:21,360 | INFO     | sum of square deviations: 5513070810.0
[2025-07-27 16:06:10] 2025-07-27 13:15:21,366 | INFO     | sum of deviations: 11591059081.999992
[2025-07-27 16:06:10] 2025-07-27 13:15:21,367 | INFO     | mean x: 1753613725.0
[2025-07-27 16:06:10] 2025-07-27 13:15:21,367 | INFO     | mean y: 2497538.0651340997
[2025-07-27 16:06:10] 2025-07-27 13:15:21,367 | INFO     | -- intersect: -3684420514.3226395
[2025-07-27 16:06:10] 2025-07-27 13:15:21,367 | INFO     | intersect: -3684420514.3226395
[2025-07-27 16:06:10] 2025-07-27 13:15:21,367 | INFO     | chi2: 1.8133919395034828
[2025-07-27 16:06:10] 2025-07-27 13:15:21,367 | INFO     | current chi2=1.8133919395034828 (change=29.76478118427827 %)
[2025-07-27 16:06:10] 2025-07-27 13:15:21,368 | INFO     | sum of square deviations: 5202255680.0
[2025-07-27 16:06:10] 2025-07-27 13:15:21,370 | INFO     | sum of deviations: 11310192939.0
[2025-07-27 16:06:10] 2025-07-27 13:15:21,370 | INFO     | mean x: 1753613572.5
[2025-07-27 16:06:10] 2025-07-27 13:15:21,370 | INFO     | mean y: 2497400.3515625
[2025-07-27 16:06:10] 2025-07-27 13:15:21,370 | INFO     | -- intersect: -3810023372.449836
[2025-07-27 16:06:10] 2025-07-27 13:15:21,370 | INFO     | intersect: -3810023372.449836
[2025-07-27 16:06:10] 2025-07-27 13:15:21,371 | INFO     | chi2: 1.8138395101776261
[2025-07-27 16:06:10] 2025-07-27 13:15:21,371 | INFO     | current chi2=1.8138395101776261 (change=-0.02468140860193235 %)
[2025-07-27 16:06:10] 2025-07-27 13:15:21,371 | INFO     | right removable region: 255
[2025-07-27 16:06:10] 2025-07-27 13:15:21,371 | INFO     | sum of square deviations: 5513070810.0
[2025-07-27 16:06:10] 2025-07-27 13:15:21,374 | INFO     | sum of deviations: -51630362302.0
[2025-07-27 16:06:10] 2025-07-27 13:15:21,374 | INFO     | mean x: 1753614030.0
[2025-07-27 16:06:10] 2025-07-27 13:15:21,374 | INFO     | mean y: 2510746.478927203
[2025-07-27 16:06:10] 2025-07-27 13:15:21,374 | INFO     | -- intersect: 16425250600.018066
[2025-07-27 16:06:10] 2025-07-27 13:15:21,374 | INFO     | intersect: 16425250600.018066
[2025-07-27 16:06:10] 2025-07-27 13:15:21,375 | INFO     | chi2: 0.9773814029188254
[2025-07-27 16:06:10] 2025-07-27 13:15:21,375 | INFO     | current chi2=0.9773814029188254 (change=62.14464440642843 %)
[2025-07-27 16:06:10] 2025-07-27 13:15:21,375 | INFO     | sum of square deviations: 5202255680.0
[2025-07-27 16:06:10] 2025-07-27 13:15:21,377 | INFO     | sum of deviations: -46533602431.5
[2025-07-27 16:06:10] 2025-07-27 13:15:21,378 | INFO     | mean x: 1753614182.5
[2025-07-27 16:06:10] 2025-07-27 13:15:21,378 | INFO     | mean y: 2508226.08984375
[2025-07-27 16:06:10] 2025-07-27 13:15:21,378 | INFO     | -- intersect: 15688393389.407093
[2025-07-27 16:06:10] 2025-07-27 13:15:21,378 | INFO     | intersect: 15688393389.407093
[2025-07-27 16:06:10] 2025-07-27 13:15:21,378 | INFO     | chi2: 0.963992535831097
[2025-07-27 16:06:10] 2025-07-27 13:15:21,378 | INFO     | current chi2=0.963992535831097 (change=1.369871275199651 %)
[2025-07-27 16:06:10] 2025-07-27 13:15:21,378 | INFO     | left removable region: 20
[2025-07-27 16:06:10] 2025-07-27 13:15:21,379 | INFO     | sum of square deviations: 4024149870.0
[2025-07-27 16:06:10] 2025-07-27 13:15:21,381 | INFO     | sum of deviations: -10918295266.999996
[2025-07-27 16:06:10] 2025-07-27 13:15:21,381 | INFO     | mean x: 1753614152.0
[2025-07-27 16:06:10] 2025-07-27 13:15:21,381 | INFO     | mean y: 2507524.276595745
[2025-07-27 16:06:10] 2025-07-27 13:15:21,381 | INFO     | -- intersect: 4760401170.003516
[2025-07-27 16:06:10] 2025-07-27 13:15:21,381 | INFO     | intersect: 4760401170.003516
[2025-07-27 16:06:10] 2025-07-27 13:15:21,382 | INFO     | chi2: 0.11218533890236888
[2025-07-27 16:06:10] 2025-07-27 13:15:21,382 | INFO     | -- intersect: 4760401170.003516
[2025-07-27 16:06:10] 2025-07-27 13:15:21,382 | INFO     | current memory leak: -2.71 B/s (using 235 data points, chi2=0.11)
[2025-07-27 16:06:10] 2025-07-27 13:15:21,383 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-07-27 16:06:10] 2025-07-27 13:15:21,383 | INFO     | ..............................
[2025-07-27 16:06:10] 2025-07-27 13:15:21,383 | INFO     | . Timing measurements:
[2025-07-27 16:06:10] 2025-07-27 13:15:21,383 | INFO     | . get job = 0 s
[2025-07-27 16:06:10] 2025-07-27 13:15:21,383 | INFO     | . initial setup = 2 s
[2025-07-27 16:06:10] 2025-07-27 13:15:21,383 | INFO     | . payload setup = 17 s
[2025-07-27 16:06:10] 2025-07-27 13:15:21,383 | INFO     | . stage-in = 0 s
[2025-07-27 16:06:10] 2025-07-27 13:15:21,383 | INFO     | . payload execution = 16239 s
[2025-07-27 16:06:10] 2025-07-27 13:15:21,384 | INFO     | . stage-out = 3 s
[2025-07-27 16:06:10] 2025-07-27 13:15:21,384 | INFO     | . log creation = 1 s
[2025-07-27 16:06:10] 2025-07-27 13:15:21,388 | INFO     | ..............................
[2025-07-27 16:06:10] 2025-07-27 13:15:21,933 | INFO     | 
[2025-07-27 16:06:10] 2025-07-27 13:15:21,933 | INFO     | job summary report
[2025-07-27 16:06:10] 2025-07-27 13:15:21,933 | INFO     | --------------------------------------------------
[2025-07-27 16:06:10] 2025-07-27 13:15:21,934 | INFO     | PanDA job id: 6745134633
[2025-07-27 16:06:10] 2025-07-27 13:15:21,934 | INFO     | task id: 45743349
[2025-07-27 16:06:10] 2025-07-27 13:15:21,934 | INFO     | errors: (none)
[2025-07-27 16:06:10] 2025-07-27 13:15:21,934 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:06:10] 2025-07-27 13:15:21,934 | INFO     | pilot state: finished 
[2025-07-27 16:06:10] 2025-07-27 13:15:21,934 | INFO     | transexitcode: 0
[2025-07-27 16:06:10] 2025-07-27 13:15:21,934 | INFO     | exeerrorcode: 0
[2025-07-27 16:06:10] 2025-07-27 13:15:21,934 | INFO     | exeerrordiag: 
[2025-07-27 16:06:10] 2025-07-27 13:15:21,934 | INFO     | exitcode: 0
[2025-07-27 16:06:10] 2025-07-27 13:15:21,934 | INFO     | exitmsg: OK
[2025-07-27 16:06:10] 2025-07-27 13:15:21,935 | INFO     | cpuconsumptiontime: 62322 s
[2025-07-27 16:06:10] 2025-07-27 13:15:21,935 | INFO     | nevents: 400
[2025-07-27 16:06:10] 2025-07-27 13:15:21,935 | INFO     | neventsw: 0
[2025-07-27 16:06:10] 2025-07-27 13:15:21,935 | INFO     | pid: 7573
[2025-07-27 16:06:10] 2025-07-27 13:15:21,935 | INFO     | pgrp: 7573
[2025-07-27 16:06:10] 2025-07-27 13:15:21,935 | INFO     | corecount: 8
[2025-07-27 16:06:10] 2025-07-27 13:15:21,935 | INFO     | event service: False
[2025-07-27 16:06:10] 2025-07-27 13:15:21,935 | INFO     | sizes: {0: 2397304, 1: 2397503, 11: 2397765, 12: 2397793, 16260: 2428794, 16261: 2428793, 16265: 2437975, 16269: 2438031, 16365: 2438225}
[2025-07-27 16:06:10] 2025-07-27 13:15:21,935 | INFO     | --------------------------------------------------
[2025-07-27 16:06:10] 2025-07-27 13:15:21,936 | INFO     | 
[2025-07-27 16:06:10] 2025-07-27 13:15:21,936 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-07-27 16:06:10] 2025-07-27 13:15:22,203 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,203 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,203 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,204 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,204 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,204 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,204 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,204 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,204 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,204 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,204 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,205 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,205 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,205 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,205 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,205 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,205 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:06:10] 2025-07-27 13:15:22,205 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,205 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:06:10] 2025-07-27 13:15:22,206 | INFO     | job 6745134633 has completed (purged errors)
[2025-07-27 16:06:10] 2025-07-27 13:15:22,206 | INFO     | overall cleanup function is called
[2025-07-27 16:06:10] 2025-07-27 13:15:23,216 | INFO     | --- collectZombieJob: --- 10, [7573]
[2025-07-27 16:06:10] 2025-07-27 13:15:23,216 | INFO     | zombie collector waiting for pid 7573
[2025-07-27 16:06:10] 2025-07-27 13:15:23,216 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:06:10] 2025-07-27 13:15:23,217 | INFO     | collected zombie processes
[2025-07-27 16:06:10] 2025-07-27 13:15:23,217 | INFO     | will attempt to kill all subprocesses of pid=7573
[2025-07-27 16:06:10] 2025-07-27 13:15:23,377 | INFO     | process IDs to be killed: [7573] (in reverse order)
[2025-07-27 16:06:10] 2025-07-27 13:15:23,952 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:06:10] 2025-07-27 13:15:23,953 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:06:10] 2025-07-27 13:15:23,956 | INFO     | did not find any defunct processes belonging to 7573
[2025-07-27 16:06:10] 2025-07-27 13:15:23,960 | INFO     | did not find any defunct processes belonging to 7573
[2025-07-27 16:06:10] 2025-07-27 13:15:23,961 | INFO     | ready for new job
[2025-07-27 16:06:10] 2025-07-27 13:15:23,961 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:06:10] 2025-07-27 13:15:23,964 | INFO     | ***************************************
[2025-07-27 16:06:10] 2025-07-27 13:15:23,964 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:06:10] 2025-07-27 13:15:23,964 | INFO     | ***************************************
[2025-07-27 16:06:10] 2025-07-27 13:15:23,964 | INFO     | 
[2025-07-27 16:06:10] 2025-07-27 13:15:23,965 | INFO     | pilot is running in a VM
[2025-07-27 16:06:10] 2025-07-27 13:15:23,965 | INFO     | architecture information:
[2025-07-27 16:06:10] 2025-07-27 13:15:23,974 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:06:10] 2025-07-27 13:15:24,165 | INFO     | cat /etc/os-release:
[2025-07-27 16:06:10] NAME="CentOS Linux"
[2025-07-27 16:06:10] VERSION="7 (Core)"
[2025-07-27 16:06:10] ID="centos"
[2025-07-27 16:06:10] ID_LIKE="rhel fedora"
[2025-07-27 16:06:10] VERSION_ID="7"
[2025-07-27 16:06:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:06:10] ANSI_COLOR="0;31"
[2025-07-27 16:06:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:06:10] HOME_URL="https://www.centos.org/"
[2025-07-27 16:06:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:06:10] 
[2025-07-27 16:06:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:06:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:06:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:06:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:06:10] 
[2025-07-27 16:06:10] 2025-07-27 13:15:24,165 | INFO     | ***************************************
[2025-07-27 16:06:10] 2025-07-27 13:15:24,669 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-07-27 16:06:10] 2025-07-27 13:15:24,888 | INFO     | sufficient remaining disk space (496483958784 B)
[2025-07-27 16:06:10] 2025-07-27 13:15:24,888 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:06:10] 2025-07-27 13:15:24,889 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:06:10] 2025-07-27 13:15:24,889 | INFO     | update_server=False
[2025-07-27 16:06:10] 2025-07-27 13:15:24,889 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:06:10] 2025-07-27 13:15:24,890 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:06:10] 2025-07-27 13:15:24,898 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:06:10] 2025-07-27 13:15:24,898 | INFO     | aborting loop
[2025-07-27 16:06:10] 2025-07-27 13:15:25,198 | INFO     | all data control threads have been joined
[2025-07-27 16:06:10] 2025-07-27 13:15:25,682 | INFO     | all payload control threads have been joined
[2025-07-27 16:06:10] 2025-07-27 13:15:25,827 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:06:10] 2025-07-27 13:15:25,895 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:25,904 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:25,981 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:26,018 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:26,086 | INFO     | all job control threads have been joined
[2025-07-27 16:06:10] 2025-07-27 13:15:26,204 | INFO     | [data] control thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:26,515 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:26,516 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:26,527 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:06:10] 2025-07-27 13:15:26,687 | INFO     | [payload] control thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:26,897 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:27,092 | INFO     | [job] control thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:27,134 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:27,368 | INFO     | [job] validate thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:27,457 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:27,533 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:29,836 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:35,251 | INFO     | job.realtimelogging is not enabled
[2025-07-27 16:06:10] 2025-07-27 13:15:36,257 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:06:10] 2025-07-27 13:15:38,359 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140560435210048)>', '<ExcThread(monitor, started 140559758903040)>']
[2025-07-27 16:06:10] 2025-07-27 13:15:43,385 | INFO     | all workflow threads have been joined
[2025-07-27 16:06:10] 2025-07-27 13:15:43,385 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:06:10] 2025-07-27 13:15:43,385 | INFO     | traces error code: 0
[2025-07-27 16:06:10] 2025-07-27 13:15:43,386 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:06:10] 2025-07-27 13:15:53,778 | INFO     | PID=1015 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-27 16:06:10] 2025-07-27 13:15:53,779 | INFO     | .. there are 9 such processes running
[2025-07-27 16:06:10] 2025-07-27 13:15:53,781 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:06:10] 2025-07-27 13:15:53,781 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:06:10] 2025-07-27 13:15:53,781 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:06:10] 2025-07-27 13:15:53,781 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:06:10] 2025-07-27 13:15:53,781 | CRITICAL | thread 'MainThread' is not alive
[2025-07-27 16:06:10] 2025-07-27 13:15:53,782 | INFO     | [monitor] control thread has ended
[2025-07-27 16:06:10] 2025-07-27 13:15:54,118 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:06:10] 2025-07-27 13:15:54,157 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:06:10] 2025-07-27 13:15:54,215 [wrapper] pilotpid: 1015
[2025-07-27 16:06:10] 2025-07-27 13:15:54,263 [wrapper] Pilot exit status: 0
[2025-07-27 16:06:10] 2025-07-27 13:15:54,770 [wrapper] pandaids: 6745134633
[2025-07-27 16:06:10] 2025-07-27 13:15:55,411 [wrapper] cleanup supervisor_pilot 23081 1016
[2025-07-27 16:06:10] 2025-07-27 13:15:55,543 [wrapper] Test setup, not cleaning
[2025-07-27 16:06:10] 2025-07-27 13:15:55,636 [wrapper] apfmon messages muted
[2025-07-27 16:06:10] 2025-07-27 13:15:55,691 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:06:10] 2025-07-27 13:15:55,789 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:06:10]  *** Error codes and diagnostics ***
[2025-07-27 16:06:10]     "exeErrorCode": 0,
[2025-07-27 16:06:10]     "exeErrorDiag": "",
[2025-07-27 16:06:10]     "pilotErrorCode": 0,
[2025-07-27 16:06:10]     "pilotErrorDiag": "",
[2025-07-27 16:06:10]  *** Listing of results directory ***
[2025-07-27 16:06:10] total 348272
[2025-07-27 16:06:10] -rw-r--r--. 1 boinc boinc    530466 Jul 26 13:03 pilot3.tar.gz
[2025-07-27 16:06:10] -rw-r--r--. 1 boinc boinc      5112 Jul 26 13:19 queuedata.json
[2025-07-27 16:06:10] -rwx------. 1 boinc boinc     36292 Jul 26 13:20 runpilot2-wrapper.sh
[2025-07-27 16:06:10] -rw-r--r--. 1 boinc boinc       100 Jul 27 10:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:06:10] -rwxr-xr-x. 1 boinc boinc      7986 Jul 27 10:41 run_atlas
[2025-07-27 16:06:10] -rw-r--r--. 1 boinc boinc       105 Jul 27 10:41 job.xml
[2025-07-27 16:06:10] -rw-r--r--. 1 boinc boinc      6392 Jul 27 10:41 init_data.xml
[2025-07-27 16:06:10] -rw-r--r--. 2 boinc boinc 144988761 Jul 27 10:41 EVNT.45743347._002116.pool.root.1
[2025-07-27 16:06:10] -rw-r--r--. 2 boinc boinc     15095 Jul 27 10:41 start_atlas.sh
[2025-07-27 16:06:10] drwxrwx--x. 2 boinc boinc        68 Jul 27 10:41 shared
[2025-07-27 16:06:10] -rw-r--r--. 2 boinc boinc    542897 Jul 27 10:41 input.tar.gz
[2025-07-27 16:06:10] -rw-r--r--. 1 boinc boinc         0 Jul 27 10:41 boinc_lockfile
[2025-07-27 16:06:10] -rw-r--r--. 1 boinc boinc      2563 Jul 27 10:41 pandaJob.out
[2025-07-27 16:06:10] -rw-------. 1 boinc boinc    980109 Jul 27 10:42 agis_schedconf.cvmfs.json
[2025-07-27 16:06:10] drwx------. 4 boinc boinc      4096 Jul 27 10:42 pilot3
[2025-07-27 16:06:10] -rw-------. 1 boinc boinc 204149607 Jul 27 15:12 HITS.45743349._037045.pool.root.1
[2025-07-27 16:06:10] -rw-r--r--. 1 boinc boinc       531 Jul 27 15:12 boinc_task_state.xml
[2025-07-27 16:06:10] -rw-------. 1 boinc boinc      1029 Jul 27 15:13 memory_monitor_summary.json
[2025-07-27 16:06:10] -rw-------. 1 boinc boinc   1593052 Jul 27 15:13 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:06:10] -rw-------. 1 boinc boinc    409622 Jul 27 15:13 log.45743349._037045.job.log.tgz.1
[2025-07-27 16:06:10] -rw-------. 1 boinc boinc      7777 Jul 27 15:15 heartbeat.json
[2025-07-27 16:06:10] -rw-------. 1 boinc boinc        95 Jul 27 15:15 pilot_heartbeat.json
[2025-07-27 16:06:10] -rw-------. 1 boinc boinc       889 Jul 27 15:15 pilotlog.txt
[2025-07-27 16:06:10] -rw-------. 1 boinc boinc   1403009 Jul 27 15:15 log.45743349._037045.job.log.1
[2025-07-27 16:06:10] -rw-------. 1 boinc boinc       357 Jul 27 15:15 output.list
[2025-07-27 16:06:10] -rw-r--r--. 1 boinc boinc       620 Jul 27 15:15 runtime_log
[2025-07-27 16:06:10] -rw-------. 1 boinc boinc   1832960 Jul 27 15:15 result.tar.gz
[2025-07-27 16:06:10] -rw-r--r--. 1 boinc boinc      8660 Jul 27 15:15 runtime_log.err
[2025-07-27 16:06:10] -rw-------. 1 boinc boinc       657 Jul 27 15:15 PnAMDmz7rz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBzRLDmlcJIMn.diag
[2025-07-27 16:06:10] -rw-r--r--. 1 boinc boinc      8192 Jul 27 16:06 boinc_mmap_file
[2025-07-27 16:06:10] -rw-r--r--. 1 boinc boinc        28 Jul 27 16:06 wrapper_checkpoint.txt
[2025-07-27 16:06:10] -rw-r--r--. 1 boinc boinc     20557 Jul 27 16:06 stderr.txt
[2025-07-27 16:06:11] HITS file was successfully produced:
[2025-07-27 16:06:11] -rw-------. 1 boinc boinc 204149607 Jul 27 15:12 shared/HITS.pool.root.1
[2025-07-27 16:06:11]  *** Contents of shared directory: ***
[2025-07-27 16:06:11] total 343300
[2025-07-27 16:06:11] -rw-r--r--. 2 boinc boinc 144988761 Jul 27 10:41 ATLAS.root_0
[2025-07-27 16:06:11] -rw-r--r--. 2 boinc boinc     15095 Jul 27 10:41 start_atlas.sh
[2025-07-27 16:06:11] -rw-r--r--. 2 boinc boinc    542897 Jul 27 10:41 input.tar.gz
[2025-07-27 16:06:11] -rw-------. 1 boinc boinc 204149607 Jul 27 15:12 HITS.pool.root.1
[2025-07-27 16:06:11] -rw-------. 1 boinc boinc   1832960 Jul 27 15:15 result.tar.gz
16:06:12 (29427): run_atlas exited; CPU time 62534.741360
16:06:12 (29427): called boinc_finish(0)

</stderr_txt>
]]>

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