Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:37:16 (3785758): wrapper (7.7.26015): starting
15:37:16 (3785758): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 15:37:16] Arguments: --nthreads 8
[2025-07-26 15:37:16] Threads: 8
[2025-07-26 15:37:16] Checking for CVMFS
[2025-07-26 15:37:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 15:37:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 15:37:17] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 15:37:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 15:37:18] 2.13.0.0 109179 26221 332944 148787 2 900 22952453 40960001 32636 16776704 0 293989887 99.694 259207603 30445 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 15:37:18] CVMFS is ok
[2025-07-26 15:37:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 15:37:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 15:37:18] Further information can be found at the LHC@home message board.
[2025-07-26 15:37:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 15:37:18] Checking for apptainer binary...
[2025-07-26 15:37:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 15:37:18] Running /usr/bin/apptainer --version
[2025-07-26 15:37:18] apptainer version 1.4.1-1.el9
[2025-07-26 15:37:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 15:37:18] c8-7-5.aglt2.org
[2025-07-26 15:37:18] apptainer works
[2025-07-26 15:37:18] Set ATHENA_PROC_NUMBER=8
[2025-07-26 15:37:18] Set ATHENA_CORE_NUMBER=8
[2025-07-26 15:37:18] Starting ATLAS job with PandaID=6745229122
[2025-07-26 15:37:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 16:51:45]  *** The last 200 lines of the pilot log: ***
[2025-07-26 16:51:45]  replicas=None
[2025-07-26 16:51:45]  scope=mc23_13p6TeV
[2025-07-26 16:51:45]  status=None
[2025-07-26 16:51:45]  status_code=0
[2025-07-26 16:51:45]  storage_token=
[2025-07-26 16:51:45]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6745229122/log.45743349._039193.job.log.tgz.1
[2025-07-26 16:51:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/bf/log.45743349._039193.job.log.tgz.1
[2025-07-26 16:51:45]  workdir=None
[2025-07-26 16:51:45] ]
[2025-07-26 16:51:45] 2025-07-26 20:50:58,645 | INFO     | transferring file log.45743349._039193.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6745229122/log.45743349._039193.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 16:51:45] 2025-07-26 20:50:58,645 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6745229122/log.45743349._039193.job.log.tgz.1 /tmp/boinchome/slots/2/log.45743349._039193.job
[2025-07-26 16:51:45] 2025-07-26 20:50:58,679 | INFO     | adding to output.list: log.45743349._039193.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4a/bf/log.45743349._039193.job.log.tg
[2025-07-26 16:51:45] 2025-07-26 20:50:58,679 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 16:51:45] 2025-07-26 20:50:58,679 | INFO     | summary of transferred files:
[2025-07-26 16:51:45] 2025-07-26 20:50:58,679 | INFO     |  -- lfn=log.45743349._039193.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 16:51:45] 2025-07-26 20:50:58,680 | INFO     | stage-out finished correctly
[2025-07-26 16:51:45] 2025-07-26 20:51:00,042 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 16:51:45] 2025-07-26 20:51:01,255 | INFO     | job 6745229122 has state=finished
[2025-07-26 16:51:45] 2025-07-26 20:51:01,255 | INFO     | preparing for final server update for job 6745229122 in state='finished'
[2025-07-26 16:51:45] 2025-07-26 20:51:01,255 | INFO     | this job has now completed (state=finished)
[2025-07-26 16:51:45] 2025-07-26 20:51:01,255 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 16:51:45] 2025-07-26 20:51:01,255 | INFO     | log transfer has been attempted: DONE
[2025-07-26 16:51:45] 2025-07-26 20:51:01,255 | INFO     | job 6745229122 has finished - writing final server update
[2025-07-26 16:51:45] 2025-07-26 20:51:01,256 | INFO     | total number of processed events: 400 (read)
[2025-07-26 16:51:45] 2025-07-26 20:51:01,261 | INFO     | executing command: lscpu
[2025-07-26 16:51:45] 2025-07-26 20:51:01,338 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 16:51:45] 2025-07-26 20:51:03,752 | WARNING  | process 3808507 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 16:51:45] 2025-07-26 20:51:03,752 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745229122/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 16:51:45] 2025-07-26 20:51:04,408 | INFO     | number of running child processes to parent process 3808507: 1
[2025-07-26 16:51:45] 2025-07-26 20:51:04,408 | INFO     | maximum number of monitored processes: 6
[2025-07-26 16:51:45] 2025-07-26 20:51:06,915 | INFO     | monitor loop #298: job 0:6745229122 is in state 'finished'
[2025-07-26 16:51:45] 2025-07-26 20:51:06,916 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 16:51:45] 2025-07-26 20:51:09,421 | INFO     | monitor loop #299: job 0:6745229122 is in state 'finished'
[2025-07-26 16:51:45] 2025-07-26 20:51:09,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 16:51:45] 2025-07-26 20:51:11,925 | INFO     | monitor loop #300: job 0:6745229122 is in state 'finished'
[2025-07-26 16:51:45] 2025-07-26 20:51:11,925 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 16:51:45] 2025-07-26 20:51:12,382 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 16:51:45] 2025-07-26 20:51:12,389 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3729.55509375
[2025-07-26 16:51:45] 2025-07-26 20:51:12,402 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6745229122/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 16:51:45] 2025-07-26 20:51:12,402 | INFO     | extracted standard info from prmon json
[2025-07-26 16:51:45] 2025-07-26 20:51:12,402 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 16:51:45] 2025-07-26 20:51:12,402 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 16:51:45] 2025-07-26 20:51:12,403 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 16:51:45] 2025-07-26 20:51:12,403 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 16:51:45] 2025-07-26 20:51:12,404 | INFO     | fitting pss+swap vs Time
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | sum of square deviations: 81266640.0
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | sum of deviations: -2802089168.0
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | mean x: 1753560957.5
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | mean y: 2229086.65625
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | -- intersect: 60465343649.26716
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | intersect: 60465343649.26716
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | chi2: 0.03361035819052509
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | -- intersect: 60465343649.26716
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | current memory leak: -34.48 B/s (using 64 data points, chi2=0.03)
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | could have reported an average CPU frequency of 3715 MHz (6 samples)
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | ..............................
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | . Timing measurements:
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | . get job = 0 s
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | . initial setup = 3 s
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | . payload setup = 17 s
[2025-07-26 16:51:45] 2025-07-26 20:51:12,405 | INFO     | . stage-in = 0 s
[2025-07-26 16:51:45] 2025-07-26 20:51:12,406 | INFO     | . payload execution = 4333 s
[2025-07-26 16:51:45] 2025-07-26 20:51:12,406 | INFO     | . stage-out = 0 s
[2025-07-26 16:51:45] 2025-07-26 20:51:12,406 | INFO     | . log creation = 0 s
[2025-07-26 16:51:45] 2025-07-26 20:51:12,406 | INFO     | ..............................
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | 
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | job summary report
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | --------------------------------------------------
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | PanDA job id: 6745229122
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | task id: 45743349
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | errors: (none)
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | pilot state: finished 
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | transexitcode: 0
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | exeerrorcode: 0
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | exeerrordiag: 
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | exitcode: 0
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | exitmsg: OK
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | cpuconsumptiontime: 27637 s
[2025-07-26 16:51:45] 2025-07-26 20:51:12,487 | INFO     | nevents: 400
[2025-07-26 16:51:45] 2025-07-26 20:51:12,488 | INFO     | neventsw: 0
[2025-07-26 16:51:45] 2025-07-26 20:51:12,488 | INFO     | pid: 3808507
[2025-07-26 16:51:45] 2025-07-26 20:51:12,488 | INFO     | pgrp: 3808507
[2025-07-26 16:51:45] 2025-07-26 20:51:12,488 | INFO     | corecount: 8
[2025-07-26 16:51:45] 2025-07-26 20:51:12,488 | INFO     | event service: False
[2025-07-26 16:51:45] 2025-07-26 20:51:12,488 | INFO     | sizes: {0: 2396647, 1: 2397503, 12: 2397503, 15: 2397793, 22: 2397821, 4354: 2423924, 4355: 2424051, 4356: 2433105, 4357: 2433161, 4370: 2433355}
[2025-07-26 16:51:45] 2025-07-26 20:51:12,488 | INFO     | --------------------------------------------------
[2025-07-26 16:51:45] 2025-07-26 20:51:12,488 | INFO     | 
[2025-07-26 16:51:45] 2025-07-26 20:51:12,488 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,519 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 16:51:45] 2025-07-26 20:51:12,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,520 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 16:51:45] 2025-07-26 20:51:12,520 | INFO     | job 6745229122 has completed (purged errors)
[2025-07-26 16:51:45] 2025-07-26 20:51:12,520 | INFO     | overall cleanup function is called
[2025-07-26 16:51:45] 2025-07-26 20:51:13,527 | INFO     | --- collectZombieJob: --- 10, [3808507]
[2025-07-26 16:51:45] 2025-07-26 20:51:13,528 | INFO     | zombie collector waiting for pid 3808507
[2025-07-26 16:51:45] 2025-07-26 20:51:13,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 16:51:45] 2025-07-26 20:51:13,528 | INFO     | collected zombie processes
[2025-07-26 16:51:45] 2025-07-26 20:51:13,528 | INFO     | will attempt to kill all subprocesses of pid=3808507
[2025-07-26 16:51:45] 2025-07-26 20:51:13,979 | INFO     | process IDs to be killed: [3808507] (in reverse order)
[2025-07-26 16:51:45] 2025-07-26 20:51:14,187 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 16:51:45] 2025-07-26 20:51:14,188 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 16:51:45] 2025-07-26 20:51:14,212 | INFO     | did not find any defunct processes belonging to 3808507
[2025-07-26 16:51:45] 2025-07-26 20:51:14,237 | INFO     | did not find any defunct processes belonging to 3808507
[2025-07-26 16:51:45] 2025-07-26 20:51:14,238 | INFO     | ready for new job
[2025-07-26 16:51:45] 2025-07-26 20:51:14,238 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 16:51:45] 2025-07-26 20:51:14,239 | INFO     | ***************************************
[2025-07-26 16:51:45] 2025-07-26 20:51:14,239 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 16:51:45] 2025-07-26 20:51:14,239 | INFO     | ***************************************
[2025-07-26 16:51:45] 2025-07-26 20:51:14,239 | INFO     | 
[2025-07-26 16:51:45] 2025-07-26 20:51:14,261 | INFO     | architecture information:
[2025-07-26 16:51:45] 2025-07-26 20:51:14,261 | INFO     | executing command: cat /etc/os-release
[2025-07-26 16:51:45] 2025-07-26 20:51:14,279 | INFO     | cat /etc/os-release:
[2025-07-26 16:51:45] NAME="CentOS Linux"
[2025-07-26 16:51:45] VERSION="7 (Core)"
[2025-07-26 16:51:45] ID="centos"
[2025-07-26 16:51:45] ID_LIKE="rhel fedora"
[2025-07-26 16:51:45] VERSION_ID="7"
[2025-07-26 16:51:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 16:51:45] ANSI_COLOR="0;31"
[2025-07-26 16:51:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 16:51:45] HOME_URL="https://www.centos.org/"
[2025-07-26 16:51:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 16:51:45] 
[2025-07-26 16:51:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 16:51:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 16:51:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 16:51:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 16:51:45] 
[2025-07-26 16:51:45] 2025-07-26 20:51:14,281 | INFO     | ***************************************
[2025-07-26 16:51:45] 2025-07-26 20:51:14,785 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-26 16:51:45] 2025-07-26 20:51:14,802 | INFO     | sufficient remaining disk space (172334514176 B)
[2025-07-26 16:51:45] 2025-07-26 20:51:14,802 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 16:51:45] 2025-07-26 20:51:14,802 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 16:51:45] 2025-07-26 20:51:14,802 | INFO     | update_server=False
[2025-07-26 16:51:45] 2025-07-26 20:51:14,802 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 16:51:45] 2025-07-26 20:51:14,802 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 16:51:45] 2025-07-26 20:51:15,025 | INFO     | all data control threads have been joined
[2025-07-26 16:51:45] 2025-07-26 20:51:15,121 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 16:51:45] 2025-07-26 20:51:15,386 | INFO     | all payload control threads have been joined
[2025-07-26 16:51:45] 2025-07-26 20:51:15,437 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 16:51:45] 2025-07-26 20:51:15,437 | INFO     | aborting loop
[2025-07-26 16:51:45] 2025-07-26 20:51:15,807 | INFO     | [job] retrieve thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:15,876 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:16,031 | INFO     | [data] control thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:16,210 | INFO     | all job control threads have been joined
[2025-07-26 16:51:45] 2025-07-26 20:51:16,353 | INFO     | [payload] validate_post thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:16,392 | INFO     | [payload] control thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:16,442 | INFO     | [job] job monitor thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:16,450 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:16,749 | INFO     | [data] copytool_in thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:16,753 | INFO     | [job] validate thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:16,783 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:16,809 | INFO     | [data] copytool_out thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:17,217 | INFO     | [job] control thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:17,378 | INFO     | [payload] failed_post thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:17,500 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 16:51:45] 2025-07-26 20:51:18,506 | INFO     | [job] queue monitor thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:19,130 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:25,734 | INFO     | job.realtimelogging is not enabled
[2025-07-26 16:51:45] 2025-07-26 20:51:26,740 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 16:51:45] 2025-07-26 20:51:27,989 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140187663185728)>', '<ExcThread(monitor, started 140187178882816)>']
[2025-07-26 16:51:45] 2025-07-26 20:51:33,014 | INFO     | all workflow threads have been joined
[2025-07-26 16:51:45] 2025-07-26 20:51:33,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 16:51:45] 2025-07-26 20:51:33,015 | INFO     | traces error code: 0
[2025-07-26 16:51:45] 2025-07-26 20:51:33,015 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 16:51:45] 2025-07-26 20:51:45,027 | INFO     | PID=3793377 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 16:51:45] 2025-07-26 20:51:45,029 | INFO     | .. there are 37 such processes running
[2025-07-26 16:51:45] 2025-07-26 20:51:45,029 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 16:51:45] 2025-07-26 20:51:45,029 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 16:51:45] 2025-07-26 20:51:45,030 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 16:51:45] 2025-07-26 20:51:45,030 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 16:51:45] 2025-07-26 20:51:45,030 | INFO     | [monitor] control thread has ended
[2025-07-26 16:51:45] 2025-07-26 20:51:45,193 [wrapper] ==== pilot stdout END ====
[2025-07-26 16:51:45] 2025-07-26 20:51:45,195 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 16:51:45] 2025-07-26 20:51:45,201 [wrapper] pilotpid: 3793377
[2025-07-26 16:51:45] 2025-07-26 20:51:45,207 [wrapper] Pilot exit status: 0
[2025-07-26 16:51:45] 2025-07-26 20:51:45,239 [wrapper] pandaids: 6745229122
[2025-07-26 16:51:45] 2025-07-26 20:51:45,430 [wrapper] cleanup supervisor_pilot  270880 3793378
[2025-07-26 16:51:45] 2025-07-26 20:51:45,437 [wrapper] Test setup, not cleaning
[2025-07-26 16:51:45] 2025-07-26 20:51:45,443 [wrapper] apfmon messages muted
[2025-07-26 16:51:45] 2025-07-26 20:51:45,453 [wrapper] ==== wrapper stdout END ====
[2025-07-26 16:51:45] 2025-07-26 20:51:45,470 [wrapper] ==== wrapper stderr END ====
[2025-07-26 16:51:45]  *** Error codes and diagnostics ***
[2025-07-26 16:51:45]     "exeErrorCode": 0,
[2025-07-26 16:51:45]     "exeErrorDiag": "",
[2025-07-26 16:51:45]     "pilotErrorCode": 0,
[2025-07-26 16:51:45]     "pilotErrorDiag": "",
[2025-07-26 16:51:45]  *** Listing of results directory ***
[2025-07-26 16:51:45] total 358380
[2025-07-26 16:51:45] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 10:04 pilot3.tar.gz
[2025-07-26 16:51:45] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 10:16 queuedata.json
[2025-07-26 16:51:45] -rwx------. 1 boincer umatlas     36292 Jul 26 10:17 runpilot2-wrapper.sh
[2025-07-26 16:51:45] -rw-r--r--. 1 boincer umatlas       100 Jul 26 15:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 16:51:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 15:37 run_atlas
[2025-07-26 16:51:45] -rw-r--r--. 1 boincer umatlas       105 Jul 26 15:37 job.xml
[2025-07-26 16:51:45] -rw-r--r--. 2 boincer umatlas 146242107 Jul 26 15:37 EVNT.45743347._002238.pool.root.1
[2025-07-26 16:51:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 15:37 start_atlas.sh
[2025-07-26 16:51:45] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 15:37 shared
[2025-07-26 16:51:45] -rw-r--r--. 2 boincer umatlas    542899 Jul 26 15:37 input.tar.gz
[2025-07-26 16:51:45] -rw-r--r--. 1 boincer umatlas         0 Jul 26 15:37 boinc_lockfile
[2025-07-26 16:51:45] -rw-r--r--. 1 boincer umatlas      2563 Jul 26 15:37 pandaJob.out
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas    980125 Jul 26 15:37 agis_schedconf.cvmfs.json
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas   1593052 Jul 26 15:37 agis_ddmendpoints.agis.ALL.json
[2025-07-26 16:51:45] drwx------. 4 boincer umatlas      4096 Jul 26 15:37 pilot3
[2025-07-26 16:51:45] -rw-r--r--. 1 boincer umatlas      7159 Jul 26 16:49 init_data.xml
[2025-07-26 16:51:45] -rw-r--r--. 1 boincer umatlas       529 Jul 26 16:50 boinc_task_state.xml
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas 215446281 Jul 26 16:50 HITS.45743349._039193.pool.root.1
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas        95 Jul 26 16:50 pilot_heartbeat.json
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas      1035 Jul 26 16:50 memory_monitor_summary.json
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas    290486 Jul 26 16:50 log.45743349._039193.job.log.tgz.1
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas      7775 Jul 26 16:51 heartbeat.json
[2025-07-26 16:51:45] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 16:51 boinc_mmap_file
[2025-07-26 16:51:45] -rw-r--r--. 1 boincer umatlas        27 Jul 26 16:51 wrapper_checkpoint.txt
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas       823 Jul 26 16:51 pilotlog.txt
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas    421495 Jul 26 16:51 log.45743349._039193.job.log.1
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas       357 Jul 26 16:51 output.list
[2025-07-26 16:51:45] -rw-r--r--. 1 boincer umatlas       620 Jul 26 16:51 runtime_log
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas    727040 Jul 26 16:51 result.tar.gz
[2025-07-26 16:51:45] -rw-r--r--. 1 boincer umatlas      8650 Jul 26 16:51 runtime_log.err
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas       650 Jul 26 16:51 FvcKDmWtuz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsKSLDmeKykkn.diag
[2025-07-26 16:51:45] -rw-r--r--. 1 boincer umatlas     21922 Jul 26 16:51 stderr.txt
[2025-07-26 16:51:45] HITS file was successfully produced:
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas 215446281 Jul 26 16:50 shared/HITS.pool.root.1
[2025-07-26 16:51:45]  *** Contents of shared directory: ***
[2025-07-26 16:51:45] total 354480
[2025-07-26 16:51:45] -rw-r--r--. 2 boincer umatlas 146242107 Jul 26 15:37 ATLAS.root_0
[2025-07-26 16:51:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 15:37 start_atlas.sh
[2025-07-26 16:51:45] -rw-r--r--. 2 boincer umatlas    542899 Jul 26 15:37 input.tar.gz
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas 215446281 Jul 26 16:50 HITS.pool.root.1
[2025-07-26 16:51:45] -rw-------. 1 boincer umatlas    727040 Jul 26 16:51 result.tar.gz
16:51:47 (3785758): run_atlas exited; CPU time 27755.182074
16:51:47 (3785758): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN