Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
15:24:53 (1607479): wrapper (7.7.26015): starting
15:24:53 (1607479): wrapper: running run_atlas (--nthreads 12)
[2025-07-27 15:24:53] Arguments: --nthreads 12
[2025-07-27 15:24:53] Threads: 12
[2025-07-27 15:24:53] Checking for CVMFS
[2025-07-27 15:24:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 15:24:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 15:24:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 15:24:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 15:24:53] 2.13.1.0 50093 7809 73416 148817 3 57 3434284 4096000 484 130560 0 15565721 99.996 287490 285 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-07-27 15:24:53] CVMFS is ok
[2025-07-27 15:24:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 15:24:53] Checking for apptainer binary...
[2025-07-27 15:24:53] apptainer is not installed, using version from CVMFS
[2025-07-27 15:24:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 15:24:53] ryzen7
[2025-07-27 15:24:53] apptainer works
[2025-07-27 15:24:53] Set ATHENA_PROC_NUMBER=12
[2025-07-27 15:24:53] Set ATHENA_CORE_NUMBER=12
[2025-07-27 15:24:53] Starting ATLAS job with PandaID=6745228905
[2025-07-27 15:24:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-27 16:56:36]  *** The last 200 lines of the pilot log: ***
[2025-07-27 16:56:36]  lfn=log.45743349._038991.job.log.tgz.1
[2025-07-27 16:56:36]  mtime=0
[2025-07-27 16:56:36]  protocol_id=None
[2025-07-27 16:56:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-27 16:56:36]  replicas=None
[2025-07-27 16:56:36]  scope=mc23_13p6TeV
[2025-07-27 16:56:36]  status=None
[2025-07-27 16:56:36]  status_code=0
[2025-07-27 16:56:36]  storage_token=
[2025-07-27 16:56:36]  surl=/opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745228905/log.45743349._038991.job.log.tgz.1
[2025-07-27 16:56:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f7/f8/log.45743349._038991.job.log.tgz.1
[2025-07-27 16:56:36]  workdir=None
[2025-07-27 16:56:36] ]
[2025-07-27 16:56:36] 2025-07-27 16:55:58,890 | INFO     | transferring file log.45743349._038991.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745228905/log.45743349._038991.job.log.tgz.1 t
[2025-07-27 16:56:36] 2025-07-27 16:55:58,890 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745228905/log.45743349._038991.job.log.tgz.1 /opt/boinc/instance_home
[2025-07-27 16:56:36] 2025-07-27 16:55:58,899 | INFO     | adding to output.list: log.45743349._038991.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f7/f8/log.45743349._038991.job.log.tg
[2025-07-27 16:56:36] 2025-07-27 16:55:58,899 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-27 16:56:36] 2025-07-27 16:55:58,899 | INFO     | summary of transferred files:
[2025-07-27 16:56:36] 2025-07-27 16:55:58,899 | INFO     |  -- lfn=log.45743349._038991.job.log.tgz.1, status_code=0, status=transferred
[2025-07-27 16:56:36] 2025-07-27 16:55:58,899 | INFO     | stage-out finished correctly
[2025-07-27 16:56:36] 2025-07-27 16:56:00,332 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-27 16:56:36] 2025-07-27 16:56:00,389 | INFO     | job 6745228905 has state=finished
[2025-07-27 16:56:36] 2025-07-27 16:56:00,390 | INFO     | preparing for final server update for job 6745228905 in state='finished'
[2025-07-27 16:56:36] 2025-07-27 16:56:00,390 | INFO     | this job has now completed (state=finished)
[2025-07-27 16:56:36] 2025-07-27 16:56:00,390 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-27 16:56:36] 2025-07-27 16:56:00,390 | INFO     | log transfer has been attempted: DONE
[2025-07-27 16:56:36] 2025-07-27 16:56:00,390 | INFO     | job 6745228905 has finished - writing final server update
[2025-07-27 16:56:36] 2025-07-27 16:56:00,390 | INFO     | total number of processed events: 400 (read)
[2025-07-27 16:56:36] 2025-07-27 16:56:00,391 | INFO     | executing command: lscpu
[2025-07-27 16:56:36] 2025-07-27 16:56:00,426 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-27 16:56:36] 2025-07-27 16:56:00,850 | INFO     | monitor loop #403: job 0:6745228905 is in state 'finished'
[2025-07-27 16:56:36] 2025-07-27 16:56:00,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:56:36] 2025-07-27 16:56:03,354 | INFO     | monitor loop #404: job 0:6745228905 is in state 'finished'
[2025-07-27 16:56:36] 2025-07-27 16:56:03,354 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-27 16:56:36] 2025-07-27 16:56:04,182 | INFO     | PID=1611236 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 16:56:36] 2025-07-27 16:56:04,183 | INFO     | .. there are 3 such processes running
[2025-07-27 16:56:36] 2025-07-27 16:56:04,367 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-27 16:56:36] 2025-07-27 16:56:04,369 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 4012.9904374999996
[2025-07-27 16:56:36] 2025-07-27 16:56:04,371 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/1/PanDA_Pilot-6745228905/memory_monitor_summary.json (trf name=prmon)
[2025-07-27 16:56:36] 2025-07-27 16:56:04,371 | INFO     | extracted standard info from prmon json
[2025-07-27 16:56:36] 2025-07-27 16:56:04,371 | INFO     | extracted standard memory fields from prmon json
[2025-07-27 16:56:36] 2025-07-27 16:56:04,371 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-27 16:56:36] 2025-07-27 16:56:04,371 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-27 16:56:36] 2025-07-27 16:56:04,371 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-27 16:56:36] 2025-07-27 16:56:04,373 | INFO     | fitting pss+swap vs Time
[2025-07-27 16:56:36] 2025-07-27 16:56:04,373 | INFO     | sum of square deviations: 177275882.0
[2025-07-27 16:56:36] 2025-07-27 16:56:04,373 | INFO     | sum of deviations: -5875893686.0
[2025-07-27 16:56:36] 2025-07-27 16:56:04,373 | INFO     | mean x: 1753632720.0
[2025-07-27 16:56:36] 2025-07-27 16:56:04,373 | INFO     | mean y: 2756975.4698795183
[2025-07-27 16:56:36] 2025-07-27 16:56:04,373 | INFO     | -- intersect: 58127750126.038475
[2025-07-27 16:56:36] 2025-07-27 16:56:04,373 | INFO     | intersect: 58127750126.038475
[2025-07-27 16:56:36] 2025-07-27 16:56:04,373 | INFO     | chi2: 0.017251030459641645
[2025-07-27 16:56:36] 2025-07-27 16:56:04,374 | INFO     | -- intersect: 58127750126.038475
[2025-07-27 16:56:36] 2025-07-27 16:56:04,374 | INFO     | current memory leak: -33.15 B/s (using 83 data points, chi2=0.02)
[2025-07-27 16:56:36] 2025-07-27 16:56:04,374 | INFO     | could have reported an average CPU frequency of 3784 MHz (6 samples)
[2025-07-27 16:56:36] 2025-07-27 16:56:04,374 | INFO     | ..............................
[2025-07-27 16:56:36] 2025-07-27 16:56:04,374 | INFO     | . Timing measurements:
[2025-07-27 16:56:36] 2025-07-27 16:56:04,374 | INFO     | . get job = 0 s
[2025-07-27 16:56:36] 2025-07-27 16:56:04,374 | INFO     | . initial setup = 1 s
[2025-07-27 16:56:36] 2025-07-27 16:56:04,374 | INFO     | . payload setup = 2 s
[2025-07-27 16:56:36] 2025-07-27 16:56:04,374 | INFO     | . stage-in = 0 s
[2025-07-27 16:56:36] 2025-07-27 16:56:04,374 | INFO     | . payload execution = 5441 s
[2025-07-27 16:56:36] 2025-07-27 16:56:04,374 | INFO     | . stage-out = 0 s
[2025-07-27 16:56:36] 2025-07-27 16:56:04,374 | INFO     | . log creation = 0 s
[2025-07-27 16:56:36] 2025-07-27 16:56:04,374 | INFO     | ..............................
[2025-07-27 16:56:36] 2025-07-27 16:56:04,432 | INFO     | 
[2025-07-27 16:56:36] 2025-07-27 16:56:04,432 | INFO     | job summary report
[2025-07-27 16:56:36] 2025-07-27 16:56:04,432 | INFO     | --------------------------------------------------
[2025-07-27 16:56:36] 2025-07-27 16:56:04,432 | INFO     | PanDA job id: 6745228905
[2025-07-27 16:56:36] 2025-07-27 16:56:04,432 | INFO     | task id: 45743349
[2025-07-27 16:56:36] 2025-07-27 16:56:04,432 | INFO     | errors: (none)
[2025-07-27 16:56:36] 2025-07-27 16:56:04,432 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-27 16:56:36] 2025-07-27 16:56:04,432 | INFO     | pilot state: finished 
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | transexitcode: 0
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | exeerrorcode: 0
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | exeerrordiag: 
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | exitcode: 0
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | exitmsg: OK
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | cpuconsumptiontime: 28467 s
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | nevents: 400
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | neventsw: 0
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | pid: 1623716
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | pgrp: 1623716
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | corecount: 12
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | event service: False
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | sizes: {0: 2397265, 1: 2397520, 2: 2397782, 11: 2397810, 5447: 2424468, 5449: 2433512, 5450: 2433696, 5454: 2433890}
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | --------------------------------------------------
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | 
[2025-07-27 16:56:36] 2025-07-27 16:56:04,433 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-07-27 16:56:36] 2025-07-27 16:56:04,444 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,444 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,444 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,444 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,444 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,444 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-27 16:56:36] 2025-07-27 16:56:04,445 | INFO     | job 6745228905 has completed (purged errors)
[2025-07-27 16:56:36] 2025-07-27 16:56:04,446 | INFO     | overall cleanup function is called
[2025-07-27 16:56:36] 2025-07-27 16:56:05,450 | INFO     | --- collectZombieJob: --- 10, [1623716]
[2025-07-27 16:56:36] 2025-07-27 16:56:05,450 | INFO     | zombie collector waiting for pid 1623716
[2025-07-27 16:56:36] 2025-07-27 16:56:05,450 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-27 16:56:36] 2025-07-27 16:56:05,450 | INFO     | collected zombie processes
[2025-07-27 16:56:36] 2025-07-27 16:56:05,450 | INFO     | will attempt to kill all subprocesses of pid=1623716
[2025-07-27 16:56:36] 2025-07-27 16:56:05,520 | INFO     | process IDs to be killed: [1623716] (in reverse order)
[2025-07-27 16:56:36] 2025-07-27 16:56:05,548 | WARNING  | found no corresponding commands to process id(s)
[2025-07-27 16:56:36] 2025-07-27 16:56:05,548 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-27 16:56:36] 2025-07-27 16:56:05,550 | INFO     | did not find any defunct processes belonging to 1623716
[2025-07-27 16:56:36] 2025-07-27 16:56:05,552 | INFO     | did not find any defunct processes belonging to 1623716
[2025-07-27 16:56:36] 2025-07-27 16:56:05,552 | INFO     | ready for new job
[2025-07-27 16:56:36] 2025-07-27 16:56:05,552 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-27 16:56:36] 2025-07-27 16:56:05,553 | INFO     | ***************************************
[2025-07-27 16:56:36] 2025-07-27 16:56:05,553 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-27 16:56:36] 2025-07-27 16:56:05,553 | INFO     | ***************************************
[2025-07-27 16:56:36] 2025-07-27 16:56:05,553 | INFO     | 
[2025-07-27 16:56:36] 2025-07-27 16:56:05,570 | INFO     | architecture information:
[2025-07-27 16:56:36] 2025-07-27 16:56:05,571 | INFO     | executing command: cat /etc/os-release
[2025-07-27 16:56:36] 2025-07-27 16:56:05,577 | INFO     | cat /etc/os-release:
[2025-07-27 16:56:36] NAME="CentOS Linux"
[2025-07-27 16:56:36] VERSION="7 (Core)"
[2025-07-27 16:56:36] ID="centos"
[2025-07-27 16:56:36] ID_LIKE="rhel fedora"
[2025-07-27 16:56:36] VERSION_ID="7"
[2025-07-27 16:56:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-27 16:56:36] ANSI_COLOR="0;31"
[2025-07-27 16:56:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-27 16:56:36] HOME_URL="https://www.centos.org/"
[2025-07-27 16:56:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-27 16:56:36] 
[2025-07-27 16:56:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-27 16:56:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-27 16:56:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-27 16:56:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-27 16:56:36] 
[2025-07-27 16:56:36] 2025-07-27 16:56:05,578 | INFO     | ***************************************
[2025-07-27 16:56:36] 2025-07-27 16:56:06,078 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2025-07-27 16:56:36] 2025-07-27 16:56:06,085 | INFO     | sufficient remaining disk space (150209560576 B)
[2025-07-27 16:56:36] 2025-07-27 16:56:06,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-27 16:56:36] 2025-07-27 16:56:06,086 | INFO     | current server update state: UPDATING_FINAL
[2025-07-27 16:56:36] 2025-07-27 16:56:06,086 | INFO     | update_server=False
[2025-07-27 16:56:36] 2025-07-27 16:56:06,086 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-27 16:56:36] 2025-07-27 16:56:06,086 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:56:36] 2025-07-27 16:56:06,175 | INFO     | all data control threads have been joined
[2025-07-27 16:56:36] 2025-07-27 16:56:06,393 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-27 16:56:36] 2025-07-27 16:56:06,858 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-27 16:56:36] 2025-07-27 16:56:06,858 | INFO     | aborting loop
[2025-07-27 16:56:36] 2025-07-27 16:56:06,966 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-27 16:56:36] 2025-07-27 16:56:07,090 | INFO     | [job] queue monitor thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:07,091 | INFO     | [job] retrieve thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:07,181 | INFO     | [data] control thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:07,382 | INFO     | [payload] execute_payloads thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:07,586 | INFO     | all payload control threads have been joined
[2025-07-27 16:56:36] 2025-07-27 16:56:07,727 | INFO     | all job control threads have been joined
[2025-07-27 16:56:36] 2025-07-27 16:56:07,771 | INFO     | [job] validate thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:07,858 | INFO     | [job] job monitor thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:07,922 | INFO     | [job] create_data_payload thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:08,043 | INFO     | [payload] validate_post thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:08,155 | INFO     | [payload] validate_pre thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:08,298 | INFO     | [data] copytool_in thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:08,390 | INFO     | [payload] failed_post thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:08,587 | INFO     | [payload] control thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:08,730 | INFO     | [job] control thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:08,971 | INFO     | [data] copytool_out thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:10,398 | INFO     | [data] queue_monitor thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:16,546 | INFO     | job.realtimelogging is not enabled
[2025-07-27 16:56:36] 2025-07-27 16:56:17,551 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-27 16:56:36] 2025-07-27 16:56:19,499 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140632008599360)>', '<ExcThread(monitor, started 140631431169792)>']
[2025-07-27 16:56:36] 2025-07-27 16:56:24,520 | INFO     | all workflow threads have been joined
[2025-07-27 16:56:36] 2025-07-27 16:56:24,520 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-27 16:56:36] 2025-07-27 16:56:24,520 | INFO     | traces error code: 0
[2025-07-27 16:56:36] 2025-07-27 16:56:24,520 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-27 16:56:36] 2025-07-27 16:56:36,301 | INFO     | PID=1611236 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-27 16:56:36] 2025-07-27 16:56:36,301 | INFO     | .. there are 3 such processes running
[2025-07-27 16:56:36] 2025-07-27 16:56:36,301 | INFO     | found 0 job(s) in 20 queues
[2025-07-27 16:56:36] 2025-07-27 16:56:36,301 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-27 16:56:36] 2025-07-27 16:56:36,302 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-27 16:56:36] 2025-07-27 16:56:36,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-27 16:56:36] 2025-07-27 16:56:36,302 | INFO     | [monitor] control thread has ended
[2025-07-27 16:56:36] 2025-07-27 16:56:36,339 [wrapper] ==== pilot stdout END ====
[2025-07-27 16:56:36] 2025-07-27 16:56:36,341 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-27 16:56:36] 2025-07-27 16:56:36,342 [wrapper] pilotpid: 1611236
[2025-07-27 16:56:36] 2025-07-27 16:56:36,343 [wrapper] Pilot exit status: 0
[2025-07-27 16:56:36] 2025-07-27 16:56:36,347 [wrapper] pandaids: 6745228905
[2025-07-27 16:56:36] 2025-07-27 16:56:36,360 [wrapper] cleanup supervisor_pilot 1676170 1611237
[2025-07-27 16:56:36] 2025-07-27 16:56:36,361 [wrapper] Test setup, not cleaning
[2025-07-27 16:56:36] 2025-07-27 16:56:36,362 [wrapper] apfmon messages muted
[2025-07-27 16:56:36] 2025-07-27 16:56:36,363 [wrapper] ==== wrapper stdout END ====
[2025-07-27 16:56:36] 2025-07-27 16:56:36,365 [wrapper] ==== wrapper stderr END ====
[2025-07-27 16:56:36]  *** Error codes and diagnostics ***
[2025-07-27 16:56:36]     "exeErrorCode": 0,
[2025-07-27 16:56:36]     "exeErrorDiag": "",
[2025-07-27 16:56:36]     "pilotErrorCode": 0,
[2025-07-27 16:56:36]     "pilotErrorDiag": "",
[2025-07-27 16:56:36]  *** Listing of results directory ***
[2025-07-27 16:56:36] total 350904
[2025-07-27 16:56:36] -rw-r--r-- 1 boinc boinc    530466 Jul 26 13:41 pilot3.tar.gz
[2025-07-27 16:56:36] -rwx------ 1 boinc boinc     36292 Jul 26 13:55 runpilot2-wrapper.sh
[2025-07-27 16:56:36] -rw-r--r-- 1 boinc boinc      5112 Jul 26 13:55 queuedata.json
[2025-07-27 16:56:36] -rw-rw-r-- 1 boinc boinc       100 Jul 27 15:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-27 16:56:36] -rwxr-xr-x 1 boinc boinc      7986 Jul 27 15:24 run_atlas
[2025-07-27 16:56:36] -rw-rw-r-- 1 boinc boinc       105 Jul 27 15:24 job.xml
[2025-07-27 16:56:36] -rw-r--r-- 2 boinc boinc     15095 Jul 27 15:24 start_atlas.sh
[2025-07-27 16:56:36] drwxrwx--x 2 boinc boinc      4096 Jul 27 15:24 shared
[2025-07-27 16:56:36] -rw-r--r-- 2 boinc boinc    542881 Jul 27 15:24 input.tar.gz
[2025-07-27 16:56:36] -rw-rw-r-- 1 boinc boinc      9702 Jul 27 15:24 init_data.xml
[2025-07-27 16:56:36] -rw-r--r-- 2 boinc boinc 143304414 Jul 27 15:24 EVNT.45743347._002225.pool.root.1
[2025-07-27 16:56:36] -rw-rw-r-- 1 boinc boinc         0 Jul 27 15:24 boinc_lockfile
[2025-07-27 16:56:36] -rw-rw-r-- 1 boinc boinc      2560 Jul 27 15:24 pandaJob.out
[2025-07-27 16:56:36] -rw------- 1 boinc boinc    980101 Jul 27 15:24 agis_schedconf.cvmfs.json
[2025-07-27 16:56:36] -rw------- 1 boinc boinc   1593052 Jul 27 15:24 agis_ddmendpoints.agis.ALL.json
[2025-07-27 16:56:36] drwx------ 4 boinc boinc      4096 Jul 27 15:24 pilot3
[2025-07-27 16:56:36] -rw-rw-r-- 1 boinc boinc       529 Jul 27 16:55 boinc_task_state.xml
[2025-07-27 16:56:36] -rw------- 1 boinc boinc 210331113 Jul 27 16:55 HITS.45743349._038991.pool.root.1
[2025-07-27 16:56:36] -rw------- 1 boinc boinc      1019 Jul 27 16:55 memory_monitor_summary.json
[2025-07-27 16:56:36] -rw------- 1 boinc boinc    355044 Jul 27 16:55 log.45743349._038991.job.log.tgz.1
[2025-07-27 16:56:36] -rw------- 1 boinc boinc      7730 Jul 27 16:56 heartbeat.json
[2025-07-27 16:56:36] -rw-rw-r-- 1 boinc boinc        27 Jul 27 16:56 wrapper_checkpoint.txt
[2025-07-27 16:56:36] -rw-rw-r-- 1 boinc boinc      8192 Jul 27 16:56 boinc_mmap_file
[2025-07-27 16:56:36] -rw------- 1 boinc boinc       822 Jul 27 16:56 pilotlog.txt
[2025-07-27 16:56:36] -rw------- 1 boinc boinc        95 Jul 27 16:56 pilot_heartbeat.json
[2025-07-27 16:56:36] -rw------- 1 boinc boinc    548884 Jul 27 16:56 log.45743349._038991.job.log.1
[2025-07-27 16:56:36] -rw------- 1 boinc boinc       357 Jul 27 16:56 output.list
[2025-07-27 16:56:36] -rw-rw-r-- 1 boinc boinc       620 Jul 27 16:56 runtime_log
[2025-07-27 16:56:36] -rw------- 1 boinc boinc    921600 Jul 27 16:56 result.tar.gz
[2025-07-27 16:56:36] -rw------- 1 boinc boinc       648 Jul 27 16:56 tk0KDmcYuz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmRr0KDmRVhJqn.diag
[2025-07-27 16:56:36] -rw-rw-r-- 1 boinc boinc      8954 Jul 27 16:56 runtime_log.err
[2025-07-27 16:56:36] -rw-rw-r-- 1 boinc boinc     21540 Jul 27 16:56 stderr.txt
[2025-07-27 16:56:36] HITS file was successfully produced:
[2025-07-27 16:56:36] -rw------- 1 boinc boinc 210331113 Jul 27 16:55 shared/HITS.pool.root.1
[2025-07-27 16:56:36]  *** Contents of shared directory: ***
[2025-07-27 16:56:36] total 346808
[2025-07-27 16:56:36] -rw-r--r-- 2 boinc boinc     15095 Jul 27 15:24 start_atlas.sh
[2025-07-27 16:56:36] -rw-r--r-- 2 boinc boinc    542881 Jul 27 15:24 input.tar.gz
[2025-07-27 16:56:36] -rw-r--r-- 2 boinc boinc 143304414 Jul 27 15:24 ATLAS.root_0
[2025-07-27 16:56:36] -rw------- 1 boinc boinc 210331113 Jul 27 16:55 HITS.pool.root.1
[2025-07-27 16:56:36] -rw------- 1 boinc boinc    921600 Jul 27 16:56 result.tar.gz
16:56:37 (1607479): run_atlas exited; CPU time 28486.551262
16:56:37 (1607479): called boinc_finish(0)

</stderr_txt>
]]>

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