Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:16:39 (5831): wrapper (7.7.26015): starting
15:16:39 (5831): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 15:16:39] Arguments: --nthreads 12
[2025-07-26 15:16:39] Threads: 12
[2025-07-26 15:16:39] Checking for CVMFS
[2025-07-26 15:16:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 15:16:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 15:16:39] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 15:16:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 15:16:39] 2.11.2.0 2998 110924 103024 148786 1 59 14427710 20275200 1 130560 0 37463617 99.971 9682716 10974 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 15:16:39] CVMFS is ok
[2025-07-26 15:16:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 15:16:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 15:16:40] Further information can be found at the LHC@home message board.
[2025-07-26 15:16:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 15:16:40] Checking for apptainer binary...
[2025-07-26 15:16:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 15:16:40] Running /usr/bin/apptainer --version
[2025-07-26 15:16:40] apptainer version 1.3.2-1.el7
[2025-07-26 15:16:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 15:16:41] c-205-25.aglt2.org
[2025-07-26 15:16:41] apptainer works
[2025-07-26 15:16:41] Set ATHENA_PROC_NUMBER=12
[2025-07-26 15:16:41] Set ATHENA_CORE_NUMBER=12
[2025-07-26 15:16:41] Starting ATLAS job with PandaID=6745228272
[2025-07-26 15:16:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 16:41:24]  *** The last 200 lines of the pilot log: ***
[2025-07-26 16:41:25]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 16:41:25]  replicas=None
[2025-07-26 16:41:25]  scope=mc23_13p6TeV
[2025-07-26 16:41:25]  status=None
[2025-07-26 16:41:25]  status_code=0
[2025-07-26 16:41:25]  storage_token=
[2025-07-26 16:41:25]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745228272/log.45743349._038726.job.log.tgz.1
[2025-07-26 16:41:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/75/4e/log.45743349._038726.job.log.tgz.1
[2025-07-26 16:41:25]  workdir=None
[2025-07-26 16:41:25] ]
[2025-07-26 16:41:25] 2025-07-26 20:40:42,962 | INFO     | transferring file log.45743349._038726.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745228272/log.45743349._038726.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 16:41:25] 2025-07-26 20:40:42,962 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745228272/log.45743349._038726.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._038726.job
[2025-07-26 16:41:25] 2025-07-26 20:40:42,985 | INFO     | adding to output.list: log.45743349._038726.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/75/4e/log.45743349._038726.job.log.tg
[2025-07-26 16:41:25] 2025-07-26 20:40:42,986 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 16:41:25] 2025-07-26 20:40:42,986 | INFO     | summary of transferred files:
[2025-07-26 16:41:25] 2025-07-26 20:40:42,987 | INFO     |  -- lfn=log.45743349._038726.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 16:41:25] 2025-07-26 20:40:42,987 | INFO     | stage-out finished correctly
[2025-07-26 16:41:25] 2025-07-26 20:40:44,477 | WARNING  | process 15946 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 16:41:25] 2025-07-26 20:40:44,478 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745228272/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 16:41:25] 2025-07-26 20:40:44,569 | INFO     | number of running child processes to parent process 15946: 1
[2025-07-26 16:41:25] 2025-07-26 20:40:44,569 | INFO     | maximum number of monitored processes: 6
[2025-07-26 16:41:25] 2025-07-26 20:40:45,236 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 16:41:25] 2025-07-26 20:40:46,720 | INFO     | job 6745228272 has state=finished
[2025-07-26 16:41:25] 2025-07-26 20:40:46,721 | INFO     | preparing for final server update for job 6745228272 in state='finished'
[2025-07-26 16:41:25] 2025-07-26 20:40:46,721 | INFO     | this job has now completed (state=finished)
[2025-07-26 16:41:25] 2025-07-26 20:40:46,722 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 16:41:25] 2025-07-26 20:40:46,722 | INFO     | log transfer has been attempted: DONE
[2025-07-26 16:41:25] 2025-07-26 20:40:46,722 | INFO     | job 6745228272 has finished - writing final server update
[2025-07-26 16:41:25] 2025-07-26 20:40:46,722 | INFO     | total number of processed events: 400 (read)
[2025-07-26 16:41:25] 2025-07-26 20:40:46,723 | INFO     | executing command: lscpu
[2025-07-26 16:41:25] 2025-07-26 20:40:46,749 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 16:41:25] 2025-07-26 20:40:47,073 | INFO     | monitor loop #376: job 0:6745228272 is in state 'finished'
[2025-07-26 16:41:25] 2025-07-26 20:40:47,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 16:41:25] 2025-07-26 20:40:49,576 | INFO     | monitor loop #377: job 0:6745228272 is in state 'finished'
[2025-07-26 16:41:25] 2025-07-26 20:40:49,577 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 16:41:25] 2025-07-26 20:40:51,701 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-26 16:41:25] 2025-07-26 20:40:51,705 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-07-26 16:41:25] 2025-07-26 20:40:51,707 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745228272/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 16:41:25] 2025-07-26 20:40:51,708 | INFO     | extracted standard info from prmon json
[2025-07-26 16:41:25] 2025-07-26 20:40:51,708 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 16:41:25] 2025-07-26 20:40:51,708 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 16:41:25] 2025-07-26 20:40:51,708 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 16:41:25] 2025-07-26 20:40:51,708 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 16:41:25] 2025-07-26 20:40:51,710 | INFO     | fitting pss+swap vs Time
[2025-07-26 16:41:25] 2025-07-26 20:40:51,711 | INFO     | sum of square deviations: 130793150.0
[2025-07-26 16:41:25] 2025-07-26 20:40:51,711 | INFO     | sum of deviations: -4701451658.0
[2025-07-26 16:41:25] 2025-07-26 20:40:51,711 | INFO     | mean x: 1753560008.0
[2025-07-26 16:41:25] 2025-07-26 20:40:51,711 | INFO     | mean y: 2805423.92
[2025-07-26 16:41:25] 2025-07-26 20:40:51,711 | INFO     | -- intersect: 63035751774.81141
[2025-07-26 16:41:25] 2025-07-26 20:40:51,711 | INFO     | intersect: 63035751774.81141
[2025-07-26 16:41:25] 2025-07-26 20:40:51,712 | INFO     | chi2: 0.07549440062534427
[2025-07-26 16:41:25] 2025-07-26 20:40:51,712 | INFO     | -- intersect: 63035751774.81141
[2025-07-26 16:41:25] 2025-07-26 20:40:51,712 | INFO     | current memory leak: -35.95 B/s (using 75 data points, chi2=0.08)
[2025-07-26 16:41:25] 2025-07-26 20:40:51,712 | INFO     | could have reported an average CPU frequency of 2034 MHz (6 samples)
[2025-07-26 16:41:25] 2025-07-26 20:40:51,712 | INFO     | ..............................
[2025-07-26 16:41:25] 2025-07-26 20:40:51,713 | INFO     | . Timing measurements:
[2025-07-26 16:41:25] 2025-07-26 20:40:51,713 | INFO     | . get job = 0 s
[2025-07-26 16:41:25] 2025-07-26 20:40:51,713 | INFO     | . initial setup = 2 s
[2025-07-26 16:41:25] 2025-07-26 20:40:51,713 | INFO     | . payload setup = 10 s
[2025-07-26 16:41:25] 2025-07-26 20:40:51,713 | INFO     | . stage-in = 0 s
[2025-07-26 16:41:25] 2025-07-26 20:40:51,713 | INFO     | . payload execution = 4997 s
[2025-07-26 16:41:25] 2025-07-26 20:40:51,713 | INFO     | . stage-out = 0 s
[2025-07-26 16:41:25] 2025-07-26 20:40:51,713 | INFO     | . log creation = 0 s
[2025-07-26 16:41:25] 2025-07-26 20:40:51,713 | INFO     | ..............................
[2025-07-26 16:41:25] 2025-07-26 20:40:52,277 | INFO     | 
[2025-07-26 16:41:25] 2025-07-26 20:40:52,278 | INFO     | job summary report
[2025-07-26 16:41:25] 2025-07-26 20:40:52,278 | INFO     | --------------------------------------------------
[2025-07-26 16:41:25] 2025-07-26 20:40:52,278 | INFO     | PanDA job id: 6745228272
[2025-07-26 16:41:25] 2025-07-26 20:40:52,278 | INFO     | task id: 45743349
[2025-07-26 16:41:25] 2025-07-26 20:40:52,278 | INFO     | errors: (none)
[2025-07-26 16:41:25] 2025-07-26 20:40:52,279 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 16:41:25] 2025-07-26 20:40:52,279 | INFO     | pilot state: finished 
[2025-07-26 16:41:25] 2025-07-26 20:40:52,279 | INFO     | transexitcode: 0
[2025-07-26 16:41:25] 2025-07-26 20:40:52,279 | INFO     | exeerrorcode: 0
[2025-07-26 16:41:25] 2025-07-26 20:40:52,279 | INFO     | exeerrordiag: 
[2025-07-26 16:41:25] 2025-07-26 20:40:52,279 | INFO     | exitcode: 0
[2025-07-26 16:41:25] 2025-07-26 20:40:52,279 | INFO     | exitmsg: OK
[2025-07-26 16:41:25] 2025-07-26 20:40:52,280 | INFO     | cpuconsumptiontime: 52874 s
[2025-07-26 16:41:25] 2025-07-26 20:40:52,280 | INFO     | nevents: 400
[2025-07-26 16:41:25] 2025-07-26 20:40:52,280 | INFO     | neventsw: 0
[2025-07-26 16:41:25] 2025-07-26 20:40:52,280 | INFO     | pid: 15946
[2025-07-26 16:41:25] 2025-07-26 20:40:52,280 | INFO     | pgrp: 15946
[2025-07-26 16:41:25] 2025-07-26 20:40:52,280 | INFO     | corecount: 12
[2025-07-26 16:41:25] 2025-07-26 20:40:52,281 | INFO     | event service: False
[2025-07-26 16:41:25] 2025-07-26 20:40:52,281 | INFO     | sizes: {0: 2397304, 1: 2397503, 5: 2397765, 11: 2397821, 5011: 2424095, 5012: 2433093, 5014: 2433277, 5021: 2433471}
[2025-07-26 16:41:25] 2025-07-26 20:40:52,281 | INFO     | --------------------------------------------------
[2025-07-26 16:41:25] 2025-07-26 20:40:52,281 | INFO     | 
[2025-07-26 16:41:25] 2025-07-26 20:40:52,281 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 16:41:25] 2025-07-26 20:40:52,308 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,308 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,308 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,308 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,309 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,309 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,309 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,309 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,309 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,309 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,310 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,310 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,310 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,310 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,310 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,311 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,311 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,311 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 16:41:25] 2025-07-26 20:40:52,311 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,311 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 16:41:25] 2025-07-26 20:40:52,311 | INFO     | job 6745228272 has completed (purged errors)
[2025-07-26 16:41:25] 2025-07-26 20:40:52,312 | INFO     | overall cleanup function is called
[2025-07-26 16:41:25] 2025-07-26 20:40:52,503 | INFO     | PID=9446 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-26 16:41:25] 2025-07-26 20:40:53,320 | INFO     | --- collectZombieJob: --- 10, [15946]
[2025-07-26 16:41:25] 2025-07-26 20:40:53,320 | INFO     | zombie collector waiting for pid 15946
[2025-07-26 16:41:25] 2025-07-26 20:40:53,329 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 16:41:25] 2025-07-26 20:40:53,329 | INFO     | collected zombie processes
[2025-07-26 16:41:25] 2025-07-26 20:40:53,329 | INFO     | will attempt to kill all subprocesses of pid=15946
[2025-07-26 16:41:25] 2025-07-26 20:40:53,418 | INFO     | process IDs to be killed: [15946] (in reverse order)
[2025-07-26 16:41:25] 2025-07-26 20:40:53,469 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 16:41:25] 2025-07-26 20:40:53,469 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 16:41:25] 2025-07-26 20:40:53,473 | INFO     | did not find any defunct processes belonging to 15946
[2025-07-26 16:41:25] 2025-07-26 20:40:53,476 | INFO     | did not find any defunct processes belonging to 15946
[2025-07-26 16:41:25] 2025-07-26 20:40:53,476 | INFO     | ready for new job
[2025-07-26 16:41:25] 2025-07-26 20:40:53,477 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 16:41:25] 2025-07-26 20:40:53,478 | INFO     | ***************************************
[2025-07-26 16:41:25] 2025-07-26 20:40:53,478 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 16:41:25] 2025-07-26 20:40:53,478 | INFO     | ***************************************
[2025-07-26 16:41:25] 2025-07-26 20:40:53,478 | INFO     | 
[2025-07-26 16:41:25] 2025-07-26 20:40:53,479 | INFO     | architecture information:
[2025-07-26 16:41:25] 2025-07-26 20:40:53,480 | INFO     | executing command: cat /etc/os-release
[2025-07-26 16:41:25] 2025-07-26 20:40:53,495 | INFO     | cat /etc/os-release:
[2025-07-26 16:41:25] NAME="CentOS Linux"
[2025-07-26 16:41:25] VERSION="7 (Core)"
[2025-07-26 16:41:25] ID="centos"
[2025-07-26 16:41:25] ID_LIKE="rhel fedora"
[2025-07-26 16:41:25] VERSION_ID="7"
[2025-07-26 16:41:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 16:41:25] ANSI_COLOR="0;31"
[2025-07-26 16:41:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 16:41:25] HOME_URL="https://www.centos.org/"
[2025-07-26 16:41:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 16:41:25] 
[2025-07-26 16:41:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 16:41:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 16:41:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 16:41:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 16:41:25] 
[2025-07-26 16:41:25] 2025-07-26 20:40:53,496 | INFO     | ***************************************
[2025-07-26 16:41:25] 2025-07-26 20:40:53,999 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 16:41:25] 2025-07-26 20:40:54,015 | INFO     | sufficient remaining disk space (29350690816 B)
[2025-07-26 16:41:25] 2025-07-26 20:40:54,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 16:41:25] 2025-07-26 20:40:54,016 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 16:41:25] 2025-07-26 20:40:54,016 | INFO     | update_server=False
[2025-07-26 16:41:25] 2025-07-26 20:40:54,016 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 16:41:25] 2025-07-26 20:40:54,017 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 16:41:25] 2025-07-26 20:40:54,017 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 16:41:25] 2025-07-26 20:40:54,017 | INFO     | aborting loop
[2025-07-26 16:41:25] 2025-07-26 20:40:54,140 | INFO     | all data control threads have been joined
[2025-07-26 16:41:25] 2025-07-26 20:40:54,312 | INFO     | all payload control threads have been joined
[2025-07-26 16:41:25] 2025-07-26 20:40:54,681 | INFO     | all job control threads have been joined
[2025-07-26 16:41:25] 2025-07-26 20:40:55,022 | INFO     | [job] retrieve thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:40:55,023 | INFO     | [job] job monitor thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:40:55,034 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:40:55,146 | INFO     | [data] control thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:40:55,170 | INFO     | [job] validate thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:40:55,317 | INFO     | [payload] control thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:40:55,455 | INFO     | [payload] failed_post thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:40:55,484 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:40:55,687 | INFO     | [job] control thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:40:55,794 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:40:55,803 | INFO     | [data] copytool_in thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:40:55,832 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 16:41:25] 2025-07-26 20:40:56,018 | INFO     | [data] copytool_out thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:40:56,031 | INFO     | [payload] validate_post thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:40:56,808 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 16:41:25] 2025-07-26 20:40:57,814 | INFO     | [job] queue monitor thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:40:59,838 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:41:04,774 | INFO     | job.realtimelogging is not enabled
[2025-07-26 16:41:25] 2025-07-26 20:41:05,779 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 16:41:25] 2025-07-26 20:41:06,856 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140515211233088)>', '<ExcThread(monitor, started 140513814509312)>']
[2025-07-26 16:41:25] 2025-07-26 20:41:11,860 | INFO     | all workflow threads have been joined
[2025-07-26 16:41:25] 2025-07-26 20:41:11,860 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 16:41:25] 2025-07-26 20:41:11,860 | INFO     | traces error code: 0
[2025-07-26 16:41:25] 2025-07-26 20:41:11,861 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 16:41:25] 2025-07-26 20:41:24,703 | INFO     | PID=9446 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-26 16:41:25] 2025-07-26 20:41:24,704 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 16:41:25] 2025-07-26 20:41:24,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 16:41:25] 2025-07-26 20:41:24,704 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 16:41:25] 2025-07-26 20:41:24,704 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 16:41:25] 2025-07-26 20:41:24,704 | CRITICAL | thread 'MainThread' is not alive
[2025-07-26 16:41:25] 2025-07-26 20:41:24,705 | INFO     | [monitor] control thread has ended
[2025-07-26 16:41:25] 2025-07-26 20:41:24,798 [wrapper] ==== pilot stdout END ====
[2025-07-26 16:41:25] 2025-07-26 20:41:24,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 16:41:25] 2025-07-26 20:41:24,805 [wrapper] pilotpid: 9446
[2025-07-26 16:41:25] 2025-07-26 20:41:24,809 [wrapper] Pilot exit status: 0
[2025-07-26 16:41:25] 2025-07-26 20:41:24,823 [wrapper] pandaids: 6745228272
[2025-07-26 16:41:25] 2025-07-26 20:41:24,862 [wrapper] cleanup supervisor_pilot  6635 9447
[2025-07-26 16:41:25] 2025-07-26 20:41:24,866 [wrapper] Test setup, not cleaning
[2025-07-26 16:41:25] 2025-07-26 20:41:24,870 [wrapper] apfmon messages muted
[2025-07-26 16:41:25] 2025-07-26 20:41:24,873 [wrapper] ==== wrapper stdout END ====
[2025-07-26 16:41:25] 2025-07-26 20:41:24,877 [wrapper] ==== wrapper stderr END ====
[2025-07-26 16:41:25]  *** Error codes and diagnostics ***
[2025-07-26 16:41:25]     "exeErrorCode": 0,
[2025-07-26 16:41:25]     "exeErrorDiag": "",
[2025-07-26 16:41:25]     "pilotErrorCode": 0,
[2025-07-26 16:41:25]     "pilotErrorDiag": "",
[2025-07-26 16:41:25]  *** Listing of results directory ***
[2025-07-26 16:41:25] total 432264
[2025-07-26 16:41:25] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 09:41 pilot3.tar.gz
[2025-07-26 16:41:25] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 09:43 queuedata.json
[2025-07-26 16:41:25] -rwx------ 1 boincer umatlas     36292 Jul 26 09:44 runpilot2-wrapper.sh
[2025-07-26 16:41:25] -rw-r--r-- 1 boincer umatlas       100 Jul 26 15:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 16:41:25] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 15:16 run_atlas
[2025-07-26 16:41:25] -rw-r--r-- 1 boincer umatlas       105 Jul 26 15:16 job.xml
[2025-07-26 16:41:25] -rw-r--r-- 2 boincer umatlas 231379804 Jul 26 15:16 EVNT.45743347._002211.pool.root.1
[2025-07-26 16:41:25] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 15:16 start_atlas.sh
[2025-07-26 16:41:25] drwxrwx--x 2 boincer umatlas      4096 Jul 26 15:16 shared
[2025-07-26 16:41:25] -rw-r--r-- 2 boincer umatlas    542898 Jul 26 15:16 input.tar.gz
[2025-07-26 16:41:25] -rw-r--r-- 1 boincer umatlas         0 Jul 26 15:16 boinc_lockfile
[2025-07-26 16:41:25] -rw-r--r-- 1 boincer umatlas      2563 Jul 26 15:16 pandaJob.out
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas    980125 Jul 26 15:16 agis_schedconf.cvmfs.json
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas   1593052 Jul 26 15:16 agis_ddmendpoints.agis.ALL.json
[2025-07-26 16:41:25] drwx------ 4 boincer umatlas      4096 Jul 26 15:16 pilot3
[2025-07-26 16:41:25] -rw-r--r-- 1 boincer umatlas      5868 Jul 26 16:36 init_data.xml
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas 205665781 Jul 26 16:40 HITS.45743349._038726.pool.root.1
[2025-07-26 16:41:25] -rw-r--r-- 1 boincer umatlas       529 Jul 26 16:40 boinc_task_state.xml
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas      1048 Jul 26 16:40 memory_monitor_summary.json
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas    379559 Jul 26 16:40 log.45743349._038726.job.log.tgz.1
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas      7855 Jul 26 16:40 heartbeat.json
[2025-07-26 16:41:25] -rw-r--r-- 1 boincer umatlas      8192 Jul 26 16:40 boinc_mmap_file
[2025-07-26 16:41:25] -rw-r--r-- 1 boincer umatlas        27 Jul 26 16:41 wrapper_checkpoint.txt
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas        95 Jul 26 16:41 pilot_heartbeat.json
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas       814 Jul 26 16:41 pilotlog.txt
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas    477892 Jul 26 16:41 log.45743349._038726.job.log.1
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas       357 Jul 26 16:41 output.list
[2025-07-26 16:41:25] -rw-r--r-- 1 boincer umatlas       620 Jul 26 16:41 runtime_log
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas    880640 Jul 26 16:41 result.tar.gz
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas       659 Jul 26 16:41 x2KKDmWNuz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGFSLDmgSCRmn.diag
[2025-07-26 16:41:25] -rw-r--r-- 1 boincer umatlas      8662 Jul 26 16:41 runtime_log.err
[2025-07-26 16:41:25] -rw-r--r-- 1 boincer umatlas     21966 Jul 26 16:41 stderr.txt
[2025-07-26 16:41:25] HITS file was successfully produced:
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas 205665781 Jul 26 16:40 shared/HITS.pool.root.1
[2025-07-26 16:41:25]  *** Contents of shared directory: ***
[2025-07-26 16:41:25] total 428220
[2025-07-26 16:41:25] -rw-r--r-- 2 boincer umatlas 231379804 Jul 26 15:16 ATLAS.root_0
[2025-07-26 16:41:25] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 15:16 start_atlas.sh
[2025-07-26 16:41:25] -rw-r--r-- 2 boincer umatlas    542898 Jul 26 15:16 input.tar.gz
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas 205665781 Jul 26 16:40 HITS.pool.root.1
[2025-07-26 16:41:25] -rw------- 1 boincer umatlas    880640 Jul 26 16:41 result.tar.gz
16:41:26 (5831): run_atlas exited; CPU time 52840.432993
16:41:26 (5831): called boinc_finish(0)

</stderr_txt>
]]>

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