Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:41:20 (430858): wrapper (7.7.26015): starting
14:41:20 (430858): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 14:41:20] Arguments: --nthreads 8
[2025-07-26 14:41:20] Threads: 8
[2025-07-26 14:41:20] Checking for CVMFS
[2025-07-26 14:41:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 14:41:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 14:41:20] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 14:41:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 14:41:20] 2.13.0.0 1923533 18598 288848 148786 1 149 29696413 32935937 20363 16776704 0 87426632 99.554 140535950 19495 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 14:41:20] CVMFS is ok
[2025-07-26 14:41:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 14:41:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 14:41:20] Further information can be found at the LHC@home message board.
[2025-07-26 14:41:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 14:41:20] Checking for apptainer binary...
[2025-07-26 14:41:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 14:41:20] Running /usr/bin/apptainer --version
[2025-07-26 14:41:20] apptainer version 1.4.1-1.el9
[2025-07-26 14:41:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 14:41:21] c7-3-17.aglt2.org
[2025-07-26 14:41:21] apptainer works
[2025-07-26 14:41:21] Set ATHENA_PROC_NUMBER=8
[2025-07-26 14:41:21] Set ATHENA_CORE_NUMBER=8
[2025-07-26 14:41:21] Starting ATLAS job with PandaID=6745133014
[2025-07-26 14:41:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 16:21:45]  *** The last 200 lines of the pilot log: ***
[2025-07-26 16:21:45]  status=None
[2025-07-26 16:21:45]  status_code=0
[2025-07-26 16:21:45]  storage_token=
[2025-07-26 16:21:45]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745133014/log.45743349._036310.job.log.tgz.1
[2025-07-26 16:21:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/50/4b/log.45743349._036310.job.log.tgz.1
[2025-07-26 16:21:45]  workdir=None
[2025-07-26 16:21:45] ]
[2025-07-26 16:21:45] 2025-07-26 20:20:59,344 | INFO     | transferring file log.45743349._036310.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745133014/log.45743349._036310.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 16:21:45] 2025-07-26 20:20:59,345 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745133014/log.45743349._036310.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._036310.job
[2025-07-26 16:21:45] 2025-07-26 20:20:59,437 | INFO     | adding to output.list: log.45743349._036310.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/50/4b/log.45743349._036310.job.log.tg
[2025-07-26 16:21:45] 2025-07-26 20:20:59,438 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 16:21:45] 2025-07-26 20:20:59,438 | INFO     | summary of transferred files:
[2025-07-26 16:21:45] 2025-07-26 20:20:59,438 | INFO     |  -- lfn=log.45743349._036310.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 16:21:45] 2025-07-26 20:20:59,438 | INFO     | stage-out finished correctly
[2025-07-26 16:21:45] 2025-07-26 20:20:59,960 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 16:21:45] 2025-07-26 20:21:00,076 | INFO     | job 6745133014 has state=finished
[2025-07-26 16:21:45] 2025-07-26 20:21:00,076 | INFO     | preparing for final server update for job 6745133014 in state='finished'
[2025-07-26 16:21:45] 2025-07-26 20:21:00,077 | INFO     | this job has now completed (state=finished)
[2025-07-26 16:21:45] 2025-07-26 20:21:00,077 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 16:21:45] 2025-07-26 20:21:00,077 | INFO     | log transfer has been attempted: DONE
[2025-07-26 16:21:45] 2025-07-26 20:21:00,077 | INFO     | job 6745133014 has finished - writing final server update
[2025-07-26 16:21:45] 2025-07-26 20:21:00,077 | INFO     | total number of processed events: 400 (read)
[2025-07-26 16:21:45] 2025-07-26 20:21:00,084 | INFO     | executing command: lscpu
[2025-07-26 16:21:45] 2025-07-26 20:21:00,187 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 16:21:45] 2025-07-26 20:21:00,368 | INFO     | PID=434476 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 16:21:45] 2025-07-26 20:21:00,370 | INFO     | .. there are 26 such processes running
[2025-07-26 16:21:45] 2025-07-26 20:21:02,335 | WARNING  | process 443129 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 16:21:45] 2025-07-26 20:21:02,335 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745133014/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 16:21:45] 2025-07-26 20:21:02,883 | INFO     | number of running child processes to parent process 443129: 1
[2025-07-26 16:21:45] 2025-07-26 20:21:02,885 | INFO     | maximum number of monitored processes: 6
[2025-07-26 16:21:45] 2025-07-26 20:21:05,391 | INFO     | monitor loop #398: job 0:6745133014 is in state 'finished'
[2025-07-26 16:21:45] 2025-07-26 20:21:05,391 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 16:21:45] 2025-07-26 20:21:07,901 | INFO     | monitor loop #399: job 0:6745133014 is in state 'finished'
[2025-07-26 16:21:45] 2025-07-26 20:21:07,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 16:21:45] 2025-07-26 20:21:10,406 | INFO     | monitor loop #400: job 0:6745133014 is in state 'finished'
[2025-07-26 16:21:45] 2025-07-26 20:21:10,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 16:21:45] 2025-07-26 20:21:11,900 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 16:21:45] 2025-07-26 20:21:11,921 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2960.888833333333
[2025-07-26 16:21:45] 2025-07-26 20:21:11,940 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745133014/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 16:21:45] 2025-07-26 20:21:11,941 | INFO     | extracted standard info from prmon json
[2025-07-26 16:21:45] 2025-07-26 20:21:11,941 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 16:21:45] 2025-07-26 20:21:11,941 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 16:21:45] 2025-07-26 20:21:11,941 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 16:21:45] 2025-07-26 20:21:11,941 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 16:21:45] 2025-07-26 20:21:11,943 | INFO     | fitting pss+swap vs Time
[2025-07-26 16:21:45] 2025-07-26 20:21:11,943 | INFO     | sum of square deviations: 226022842.5
[2025-07-26 16:21:45] 2025-07-26 20:21:11,944 | INFO     | sum of deviations: -8847186179.000002
[2025-07-26 16:21:45] 2025-07-26 20:21:11,944 | INFO     | mean x: 1753558362.5
[2025-07-26 16:21:45] 2025-07-26 20:21:11,944 | INFO     | mean y: 2229764.4
[2025-07-26 16:21:45] 2025-07-26 20:21:11,944 | INFO     | -- intersect: 68641563458.2052
[2025-07-26 16:21:45] 2025-07-26 20:21:11,944 | INFO     | intersect: 68641563458.2052
[2025-07-26 16:21:45] 2025-07-26 20:21:11,944 | INFO     | chi2: 0.12030582117715889
[2025-07-26 16:21:45] 2025-07-26 20:21:11,944 | INFO     | -- intersect: 68641563458.2052
[2025-07-26 16:21:45] 2025-07-26 20:21:11,944 | INFO     | current memory leak: -39.14 B/s (using 90 data points, chi2=0.12)
[2025-07-26 16:21:45] 2025-07-26 20:21:11,945 | INFO     | could have reported an average CPU frequency of 2970 MHz (7 samples)
[2025-07-26 16:21:45] 2025-07-26 20:21:11,945 | INFO     | ..............................
[2025-07-26 16:21:45] 2025-07-26 20:21:11,945 | INFO     | . Timing measurements:
[2025-07-26 16:21:45] 2025-07-26 20:21:11,945 | INFO     | . get job = 0 s
[2025-07-26 16:21:45] 2025-07-26 20:21:11,945 | INFO     | . initial setup = 4 s
[2025-07-26 16:21:45] 2025-07-26 20:21:11,945 | INFO     | . payload setup = 13 s
[2025-07-26 16:21:45] 2025-07-26 20:21:11,945 | INFO     | . stage-in = 0 s
[2025-07-26 16:21:45] 2025-07-26 20:21:11,945 | INFO     | . payload execution = 5922 s
[2025-07-26 16:21:45] 2025-07-26 20:21:11,945 | INFO     | . stage-out = 1 s
[2025-07-26 16:21:45] 2025-07-26 20:21:11,945 | INFO     | . log creation = 0 s
[2025-07-26 16:21:45] 2025-07-26 20:21:11,945 | INFO     | ..............................
[2025-07-26 16:21:45] 2025-07-26 20:21:12,042 | INFO     | 
[2025-07-26 16:21:45] 2025-07-26 20:21:12,042 | INFO     | job summary report
[2025-07-26 16:21:45] 2025-07-26 20:21:12,042 | INFO     | --------------------------------------------------
[2025-07-26 16:21:45] 2025-07-26 20:21:12,043 | INFO     | PanDA job id: 6745133014
[2025-07-26 16:21:45] 2025-07-26 20:21:12,043 | INFO     | task id: 45743349
[2025-07-26 16:21:45] 2025-07-26 20:21:12,043 | INFO     | errors: (none)
[2025-07-26 16:21:45] 2025-07-26 20:21:12,043 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 16:21:45] 2025-07-26 20:21:12,043 | INFO     | pilot state: finished 
[2025-07-26 16:21:45] 2025-07-26 20:21:12,043 | INFO     | transexitcode: 0
[2025-07-26 16:21:45] 2025-07-26 20:21:12,043 | INFO     | exeerrorcode: 0
[2025-07-26 16:21:45] 2025-07-26 20:21:12,043 | INFO     | exeerrordiag: 
[2025-07-26 16:21:45] 2025-07-26 20:21:12,043 | INFO     | exitcode: 0
[2025-07-26 16:21:45] 2025-07-26 20:21:12,043 | INFO     | exitmsg: OK
[2025-07-26 16:21:45] 2025-07-26 20:21:12,043 | INFO     | cpuconsumptiontime: 39182 s
[2025-07-26 16:21:45] 2025-07-26 20:21:12,044 | INFO     | nevents: 400
[2025-07-26 16:21:45] 2025-07-26 20:21:12,044 | INFO     | neventsw: 0
[2025-07-26 16:21:45] 2025-07-26 20:21:12,044 | INFO     | pid: 443129
[2025-07-26 16:21:45] 2025-07-26 20:21:12,044 | INFO     | pgrp: 443129
[2025-07-26 16:21:45] 2025-07-26 20:21:12,044 | INFO     | corecount: 8
[2025-07-26 16:21:45] 2025-07-26 20:21:12,044 | INFO     | event service: False
[2025-07-26 16:21:45] 2025-07-26 20:21:12,044 | INFO     | sizes: {0: 2397298, 1: 2397497, 9: 2397759, 11: 2397787, 5937: 2424551, 5939: 2433733, 5951: 2433871}
[2025-07-26 16:21:45] 2025-07-26 20:21:12,044 | INFO     | --------------------------------------------------
[2025-07-26 16:21:45] 2025-07-26 20:21:12,044 | INFO     | 
[2025-07-26 16:21:45] 2025-07-26 20:21:12,044 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 16:21:45] 2025-07-26 20:21:12,086 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,086 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,086 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,086 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,086 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,087 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,087 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,087 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,087 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,087 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,087 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,087 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,087 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,087 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,087 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,087 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,087 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,088 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 16:21:45] 2025-07-26 20:21:12,088 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,088 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 16:21:45] 2025-07-26 20:21:12,088 | INFO     | job 6745133014 has completed (purged errors)
[2025-07-26 16:21:45] 2025-07-26 20:21:12,088 | INFO     | overall cleanup function is called
[2025-07-26 16:21:45] 2025-07-26 20:21:13,096 | INFO     | --- collectZombieJob: --- 10, [443129]
[2025-07-26 16:21:45] 2025-07-26 20:21:13,096 | INFO     | zombie collector waiting for pid 443129
[2025-07-26 16:21:45] 2025-07-26 20:21:13,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 16:21:45] 2025-07-26 20:21:13,099 | INFO     | collected zombie processes
[2025-07-26 16:21:45] 2025-07-26 20:21:13,099 | INFO     | will attempt to kill all subprocesses of pid=443129
[2025-07-26 16:21:45] 2025-07-26 20:21:13,647 | INFO     | process IDs to be killed: [443129] (in reverse order)
[2025-07-26 16:21:45] 2025-07-26 20:21:13,894 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 16:21:45] 2025-07-26 20:21:13,894 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 16:21:45] 2025-07-26 20:21:13,919 | INFO     | did not find any defunct processes belonging to 443129
[2025-07-26 16:21:45] 2025-07-26 20:21:13,949 | INFO     | did not find any defunct processes belonging to 443129
[2025-07-26 16:21:45] 2025-07-26 20:21:13,949 | INFO     | ready for new job
[2025-07-26 16:21:45] 2025-07-26 20:21:13,950 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 16:21:45] 2025-07-26 20:21:13,952 | INFO     | ***************************************
[2025-07-26 16:21:45] 2025-07-26 20:21:13,952 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 16:21:45] 2025-07-26 20:21:13,952 | INFO     | ***************************************
[2025-07-26 16:21:45] 2025-07-26 20:21:13,952 | INFO     | 
[2025-07-26 16:21:45] 2025-07-26 20:21:13,976 | INFO     | architecture information:
[2025-07-26 16:21:45] 2025-07-26 20:21:13,977 | INFO     | executing command: cat /etc/os-release
[2025-07-26 16:21:45] 2025-07-26 20:21:14,007 | INFO     | cat /etc/os-release:
[2025-07-26 16:21:45] NAME="CentOS Linux"
[2025-07-26 16:21:45] VERSION="7 (Core)"
[2025-07-26 16:21:45] ID="centos"
[2025-07-26 16:21:45] ID_LIKE="rhel fedora"
[2025-07-26 16:21:45] VERSION_ID="7"
[2025-07-26 16:21:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 16:21:45] ANSI_COLOR="0;31"
[2025-07-26 16:21:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 16:21:45] HOME_URL="https://www.centos.org/"
[2025-07-26 16:21:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 16:21:45] 
[2025-07-26 16:21:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 16:21:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 16:21:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 16:21:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 16:21:45] 
[2025-07-26 16:21:45] 2025-07-26 20:21:14,007 | INFO     | ***************************************
[2025-07-26 16:21:45] 2025-07-26 20:21:14,510 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 16:21:45] 2025-07-26 20:21:14,551 | INFO     | sufficient remaining disk space (75661049856 B)
[2025-07-26 16:21:45] 2025-07-26 20:21:14,551 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 16:21:45] 2025-07-26 20:21:14,552 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 16:21:45] 2025-07-26 20:21:14,552 | INFO     | update_server=False
[2025-07-26 16:21:45] 2025-07-26 20:21:14,552 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 16:21:45] 2025-07-26 20:21:14,552 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 16:21:45] 2025-07-26 20:21:14,552 | INFO     | aborting loop
[2025-07-26 16:21:45] 2025-07-26 20:21:14,982 | INFO     | all data control threads have been joined
[2025-07-26 16:21:45] 2025-07-26 20:21:15,108 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 16:21:45] 2025-07-26 20:21:15,120 | INFO     | all payload control threads have been joined
[2025-07-26 16:21:45] 2025-07-26 20:21:15,145 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 16:21:45] 2025-07-26 20:21:15,558 | INFO     | [job] retrieve thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:15,558 | INFO     | [job] job monitor thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:15,656 | INFO     | all job control threads have been joined
[2025-07-26 16:21:45] 2025-07-26 20:21:15,909 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:15,987 | INFO     | [data] control thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:16,019 | INFO     | [data] copytool_in thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:16,126 | INFO     | [payload] control thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:16,546 | INFO     | [payload] validate_post thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:16,662 | INFO     | [job] control thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:16,776 | INFO     | [payload] failed_post thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:16,844 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:16,845 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:16,971 | INFO     | [job] validate thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:17,056 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 16:21:45] 2025-07-26 20:21:17,153 | INFO     | [data] copytool_out thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:18,062 | INFO     | [job] queue monitor thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:19,124 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:24,970 | INFO     | job.realtimelogging is not enabled
[2025-07-26 16:21:45] 2025-07-26 20:21:25,976 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 16:21:45] 2025-07-26 20:21:27,475 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140646030944064)>', '<ExcThread(monitor, started 140645515638528)>']
[2025-07-26 16:21:45] 2025-07-26 20:21:32,504 | INFO     | all workflow threads have been joined
[2025-07-26 16:21:45] 2025-07-26 20:21:32,504 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 16:21:45] 2025-07-26 20:21:32,504 | INFO     | traces error code: 0
[2025-07-26 16:21:45] 2025-07-26 20:21:32,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 16:21:45] 2025-07-26 20:21:45,128 | INFO     | PID=434476 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-26 16:21:45] 2025-07-26 20:21:45,128 | INFO     | .. there are 26 such processes running
[2025-07-26 16:21:45] 2025-07-26 20:21:45,129 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 16:21:45] 2025-07-26 20:21:45,129 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 16:21:45] 2025-07-26 20:21:45,129 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 16:21:45] 2025-07-26 20:21:45,129 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 16:21:45] 2025-07-26 20:21:45,129 | INFO     | [monitor] control thread has ended
[2025-07-26 16:21:45] 2025-07-26 20:21:45,299 [wrapper] ==== pilot stdout END ====
[2025-07-26 16:21:45] 2025-07-26 20:21:45,314 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 16:21:45] 2025-07-26 20:21:45,319 [wrapper] pilotpid: 434476
[2025-07-26 16:21:45] 2025-07-26 20:21:45,335 [wrapper] Pilot exit status: 0
[2025-07-26 16:21:45] 2025-07-26 20:21:45,393 [wrapper] pandaids: 6745133014
[2025-07-26 16:21:45] 2025-07-26 20:21:45,511 [wrapper] cleanup supervisor_pilot  763366 434477
[2025-07-26 16:21:45] 2025-07-26 20:21:45,515 [wrapper] Test setup, not cleaning
[2025-07-26 16:21:45] 2025-07-26 20:21:45,518 [wrapper] apfmon messages muted
[2025-07-26 16:21:45] 2025-07-26 20:21:45,521 [wrapper] ==== wrapper stdout END ====
[2025-07-26 16:21:45] 2025-07-26 20:21:45,527 [wrapper] ==== wrapper stderr END ====
[2025-07-26 16:21:45]  *** Error codes and diagnostics ***
[2025-07-26 16:21:45]     "exeErrorCode": 0,
[2025-07-26 16:21:45]     "exeErrorDiag": "",
[2025-07-26 16:21:45]     "pilotErrorCode": 0,
[2025-07-26 16:21:45]     "pilotErrorDiag": "",
[2025-07-26 16:21:45]  *** Listing of results directory ***
[2025-07-26 16:21:45] total 353796
[2025-07-26 16:21:45] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 06:19 pilot3.tar.gz
[2025-07-26 16:21:45] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 06:19 queuedata.json
[2025-07-26 16:21:45] -rwx------. 1 boincer umatlas     36292 Jul 26 06:19 runpilot2-wrapper.sh
[2025-07-26 16:21:45] -rw-r--r--. 1 boincer umatlas       100 Jul 26 14:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 16:21:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 14:41 run_atlas
[2025-07-26 16:21:45] -rw-r--r--. 1 boincer umatlas       105 Jul 26 14:41 job.xml
[2025-07-26 16:21:45] -rw-r--r--. 2 boincer umatlas 145831141 Jul 26 14:41 EVNT.45743347._002071.pool.root.1
[2025-07-26 16:21:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 14:41 start_atlas.sh
[2025-07-26 16:21:45] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 14:41 shared
[2025-07-26 16:21:45] -rw-r--r--. 2 boincer umatlas    542882 Jul 26 14:41 input.tar.gz
[2025-07-26 16:21:45] -rw-r--r--. 1 boincer umatlas         0 Jul 26 14:41 boinc_lockfile
[2025-07-26 16:21:45] -rw-r--r--. 1 boincer umatlas      2560 Jul 26 14:41 pandaJob.out
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas    980125 Jul 26 14:41 agis_schedconf.cvmfs.json
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas   1593052 Jul 26 14:41 agis_ddmendpoints.agis.ALL.json
[2025-07-26 16:21:45] drwx------. 4 boincer umatlas      4096 Jul 26 14:41 pilot3
[2025-07-26 16:21:45] -rw-r--r--. 1 boincer umatlas      6931 Jul 26 16:18 init_data.xml
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas 210896243 Jul 26 16:20 HITS.45743349._036310.pool.root.1
[2025-07-26 16:21:45] -rw-r--r--. 1 boincer umatlas       529 Jul 26 16:20 boinc_task_state.xml
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas      1038 Jul 26 16:20 memory_monitor_summary.json
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas    301828 Jul 26 16:20 log.45743349._036310.job.log.tgz.1
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas      7774 Jul 26 16:21 heartbeat.json
[2025-07-26 16:21:45] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 16:21 boinc_mmap_file
[2025-07-26 16:21:45] -rw-r--r--. 1 boincer umatlas        27 Jul 26 16:21 wrapper_checkpoint.txt
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas        95 Jul 26 16:21 pilot_heartbeat.json
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas       822 Jul 26 16:21 pilotlog.txt
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas    542765 Jul 26 16:21 log.45743349._036310.job.log.1
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas       357 Jul 26 16:21 output.list
[2025-07-26 16:21:45] -rw-r--r--. 1 boincer umatlas       620 Jul 26 16:21 runtime_log
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas    860160 Jul 26 16:21 result.tar.gz
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas       653 Jul 26 16:21 w0zLDm1Arz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmDd0KDmy8Xxen.diag
[2025-07-26 16:21:45] -rw-r--r--. 1 boincer umatlas      8655 Jul 26 16:21 runtime_log.err
[2025-07-26 16:21:45] -rw-r--r--. 1 boincer umatlas     22109 Jul 26 16:21 stderr.txt
[2025-07-26 16:21:45] HITS file was successfully produced:
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas 210896243 Jul 26 16:20 shared/HITS.pool.root.1
[2025-07-26 16:21:45]  *** Contents of shared directory: ***
[2025-07-26 16:21:45] total 349764
[2025-07-26 16:21:45] -rw-r--r--. 2 boincer umatlas 145831141 Jul 26 14:41 ATLAS.root_0
[2025-07-26 16:21:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 14:41 start_atlas.sh
[2025-07-26 16:21:45] -rw-r--r--. 2 boincer umatlas    542882 Jul 26 14:41 input.tar.gz
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas 210896243 Jul 26 16:20 HITS.pool.root.1
[2025-07-26 16:21:45] -rw-------. 1 boincer umatlas    860160 Jul 26 16:21 result.tar.gz
16:21:47 (430858): run_atlas exited; CPU time 39387.050245
16:21:47 (430858): called boinc_finish(0)

</stderr_txt>
]]>

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