Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:41:23 (19175): wrapper (7.7.26015): starting
14:41:23 (19175): wrapper: running run_atlas (--nthreads 8)
[2025-07-26 14:41:23] Arguments: --nthreads 8
[2025-07-26 14:41:23] Threads: 8
[2025-07-26 14:41:23] Checking for CVMFS
[2025-07-26 14:41:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 14:41:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 14:41:23] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 14:41:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 14:41:23] 2.11.2.0 3213 515872 243720 148786 2 59 19896988 20275201 917 130560 0 178029937 99.988 22500869 19698 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-26 14:41:23] CVMFS is ok
[2025-07-26 14:41:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 14:41:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 14:41:23] Further information can be found at the LHC@home message board.
[2025-07-26 14:41:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 14:41:23] Checking for apptainer binary...
[2025-07-26 14:41:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 14:41:23] Running /usr/bin/apptainer --version
[2025-07-26 14:41:23] apptainer version 1.3.2-1.el7
[2025-07-26 14:41:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 14:41:24] c-205-38.aglt2.org
[2025-07-26 14:41:24] apptainer works
[2025-07-26 14:41:24] Set ATHENA_PROC_NUMBER=8
[2025-07-26 14:41:24] Set ATHENA_CORE_NUMBER=8
[2025-07-26 14:41:24] Starting ATLAS job with PandaID=6745227355
[2025-07-26 14:41:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 15:42:56]  *** The last 200 lines of the pilot log: ***
[2025-07-26 15:42:56]  filetype=log
[2025-07-26 15:42:56]  guid=89f8fdd4-5189-47e9-a913-f45f3aca540c
[2025-07-26 15:42:56]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-26 15:42:56]  is_altstaged=None
[2025-07-26 15:42:56]  is_tar=False
[2025-07-26 15:42:56]  lfn=log.45743349._038358.job.log.tgz.1
[2025-07-26 15:42:56]  mtime=0
[2025-07-26 15:42:56]  protocol_id=None
[2025-07-26 15:42:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 15:42:56]  replicas=None
[2025-07-26 15:42:56]  scope=mc23_13p6TeV
[2025-07-26 15:42:56]  status=None
[2025-07-26 15:42:56]  status_code=0
[2025-07-26 15:42:56]  storage_token=
[2025-07-26 15:42:56]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745227355/log.45743349._038358.job.log.tgz.1
[2025-07-26 15:42:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/68/log.45743349._038358.job.log.tgz.1
[2025-07-26 15:42:56]  workdir=None
[2025-07-26 15:42:56] ]
[2025-07-26 15:42:56] 2025-07-26 19:42:20,281 | INFO     | transferring file log.45743349._038358.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745227355/log.45743349._038358.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 15:42:56] 2025-07-26 19:42:20,281 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745227355/log.45743349._038358.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._038358.job
[2025-07-26 15:42:56] 2025-07-26 19:42:20,300 | INFO     | adding to output.list: log.45743349._038358.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2c/68/log.45743349._038358.job.log.tg
[2025-07-26 15:42:56] 2025-07-26 19:42:20,301 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 15:42:56] 2025-07-26 19:42:20,301 | INFO     | summary of transferred files:
[2025-07-26 15:42:56] 2025-07-26 19:42:20,301 | INFO     |  -- lfn=log.45743349._038358.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 15:42:56] 2025-07-26 19:42:20,301 | INFO     | stage-out finished correctly
[2025-07-26 15:42:56] 2025-07-26 19:42:20,345 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 15:42:56] 2025-07-26 19:42:21,850 | INFO     | job 6745227355 has state=finished
[2025-07-26 15:42:56] 2025-07-26 19:42:21,850 | INFO     | preparing for final server update for job 6745227355 in state='finished'
[2025-07-26 15:42:56] 2025-07-26 19:42:21,851 | INFO     | this job has now completed (state=finished)
[2025-07-26 15:42:56] 2025-07-26 19:42:21,851 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 15:42:56] 2025-07-26 19:42:21,851 | INFO     | log transfer has been attempted: DONE
[2025-07-26 15:42:56] 2025-07-26 19:42:21,851 | INFO     | job 6745227355 has finished - writing final server update
[2025-07-26 15:42:56] 2025-07-26 19:42:21,851 | INFO     | total number of processed events: 400 (read)
[2025-07-26 15:42:56] 2025-07-26 19:42:21,852 | INFO     | executing command: lscpu
[2025-07-26 15:42:56] 2025-07-26 19:42:21,882 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 15:42:56] 2025-07-26 19:42:22,555 | INFO     | monitor loop #279: job 0:6745227355 is in state 'finished'
[2025-07-26 15:42:56] 2025-07-26 19:42:22,555 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-26 15:42:56] 2025-07-26 19:42:24,242 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-26 15:42:56] 2025-07-26 19:42:24,246 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2686.4620625000002
[2025-07-26 15:42:56] 2025-07-26 19:42:24,249 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745227355/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 15:42:56] 2025-07-26 19:42:24,251 | INFO     | extracted standard info from prmon json
[2025-07-26 15:42:56] 2025-07-26 19:42:24,251 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 15:42:56] 2025-07-26 19:42:24,251 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 15:42:56] 2025-07-26 19:42:24,251 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 15:42:56] 2025-07-26 19:42:24,252 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 15:42:56] 2025-07-26 19:42:24,253 | INFO     | fitting pss+swap vs Time
[2025-07-26 15:42:56] 2025-07-26 19:42:24,254 | INFO     | sum of square deviations: 46147842.0
[2025-07-26 15:42:56] 2025-07-26 19:42:24,254 | INFO     | sum of deviations: -5385791930.999999
[2025-07-26 15:42:56] 2025-07-26 19:42:24,254 | INFO     | mean x: 1753557203.0
[2025-07-26 15:42:56] 2025-07-26 19:42:24,254 | INFO     | mean y: 2646521.2264150945
[2025-07-26 15:42:56] 2025-07-26 19:42:24,254 | INFO     | -- intersect: 204655644909.8472
[2025-07-26 15:42:56] 2025-07-26 19:42:24,254 | INFO     | intersect: 204655644909.8472
[2025-07-26 15:42:56] 2025-07-26 19:42:24,254 | INFO     | chi2: 0.01790581713919595
[2025-07-26 15:42:56] 2025-07-26 19:42:24,255 | INFO     | -- intersect: 204655644909.8472
[2025-07-26 15:42:56] 2025-07-26 19:42:24,255 | INFO     | current memory leak: -116.71 B/s (using 53 data points, chi2=0.02)
[2025-07-26 15:42:56] 2025-07-26 19:42:24,255 | INFO     | could have reported an average CPU frequency of 2942 MHz (6 samples)
[2025-07-26 15:42:56] 2025-07-26 19:42:24,255 | INFO     | ..............................
[2025-07-26 15:42:56] 2025-07-26 19:42:24,255 | INFO     | . Timing measurements:
[2025-07-26 15:42:56] 2025-07-26 19:42:24,255 | INFO     | . get job = 0 s
[2025-07-26 15:42:56] 2025-07-26 19:42:24,256 | INFO     | . initial setup = 2 s
[2025-07-26 15:42:56] 2025-07-26 19:42:24,256 | INFO     | . payload setup = 4 s
[2025-07-26 15:42:56] 2025-07-26 19:42:24,256 | INFO     | . stage-in = 0 s
[2025-07-26 15:42:56] 2025-07-26 19:42:24,256 | INFO     | . payload execution = 3625 s
[2025-07-26 15:42:56] 2025-07-26 19:42:24,256 | INFO     | . stage-out = 0 s
[2025-07-26 15:42:56] 2025-07-26 19:42:24,256 | INFO     | . log creation = 0 s
[2025-07-26 15:42:56] 2025-07-26 19:42:24,256 | INFO     | ..............................
[2025-07-26 15:42:56] 2025-07-26 19:42:24,727 | INFO     | 
[2025-07-26 15:42:56] 2025-07-26 19:42:24,727 | INFO     | job summary report
[2025-07-26 15:42:56] 2025-07-26 19:42:24,727 | INFO     | --------------------------------------------------
[2025-07-26 15:42:56] 2025-07-26 19:42:24,728 | INFO     | PanDA job id: 6745227355
[2025-07-26 15:42:56] 2025-07-26 19:42:24,728 | INFO     | task id: 45743349
[2025-07-26 15:42:56] 2025-07-26 19:42:24,728 | INFO     | errors: (none)
[2025-07-26 15:42:56] 2025-07-26 19:42:24,728 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 15:42:56] 2025-07-26 19:42:24,728 | INFO     | pilot state: finished 
[2025-07-26 15:42:56] 2025-07-26 19:42:24,728 | INFO     | transexitcode: 0
[2025-07-26 15:42:56] 2025-07-26 19:42:24,728 | INFO     | exeerrorcode: 0
[2025-07-26 15:42:56] 2025-07-26 19:42:24,728 | INFO     | exeerrordiag: 
[2025-07-26 15:42:56] 2025-07-26 19:42:24,728 | INFO     | exitcode: 0
[2025-07-26 15:42:56] 2025-07-26 19:42:24,729 | INFO     | exitmsg: OK
[2025-07-26 15:42:56] 2025-07-26 19:42:24,729 | INFO     | cpuconsumptiontime: 27242 s
[2025-07-26 15:42:56] 2025-07-26 19:42:24,729 | INFO     | nevents: 400
[2025-07-26 15:42:56] 2025-07-26 19:42:24,729 | INFO     | neventsw: 0
[2025-07-26 15:42:56] 2025-07-26 19:42:24,729 | INFO     | pid: 29216
[2025-07-26 15:42:56] 2025-07-26 19:42:24,729 | INFO     | pgrp: 29216
[2025-07-26 15:42:56] 2025-07-26 19:42:24,729 | INFO     | corecount: 8
[2025-07-26 15:42:56] 2025-07-26 19:42:24,729 | INFO     | event service: False
[2025-07-26 15:42:56] 2025-07-26 19:42:24,729 | INFO     | sizes: {0: 2397475, 3: 2397737, 11: 2397765, 3634: 2423604, 3636: 2432658, 3640: 2432796}
[2025-07-26 15:42:56] 2025-07-26 19:42:24,730 | INFO     | --------------------------------------------------
[2025-07-26 15:42:56] 2025-07-26 19:42:24,730 | INFO     | 
[2025-07-26 15:42:56] 2025-07-26 19:42:24,730 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 15:42:56] 2025-07-26 19:42:24,752 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,752 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,752 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,753 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,753 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,753 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,753 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,753 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,753 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,753 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,753 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,754 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,754 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,754 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,754 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,754 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,754 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,754 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 15:42:56] 2025-07-26 19:42:24,754 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,755 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 15:42:56] 2025-07-26 19:42:24,755 | INFO     | job 6745227355 has completed (purged errors)
[2025-07-26 15:42:56] 2025-07-26 19:42:24,755 | INFO     | overall cleanup function is called
[2025-07-26 15:42:56] 2025-07-26 19:42:25,762 | INFO     | --- collectZombieJob: --- 10, [29216]
[2025-07-26 15:42:56] 2025-07-26 19:42:25,762 | INFO     | zombie collector waiting for pid 29216
[2025-07-26 15:42:56] 2025-07-26 19:42:25,762 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 15:42:56] 2025-07-26 19:42:25,763 | INFO     | collected zombie processes
[2025-07-26 15:42:56] 2025-07-26 19:42:25,763 | INFO     | will attempt to kill all subprocesses of pid=29216
[2025-07-26 15:42:56] 2025-07-26 19:42:25,835 | INFO     | process IDs to be killed: [29216] (in reverse order)
[2025-07-26 15:42:56] 2025-07-26 19:42:25,869 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 15:42:56] 2025-07-26 19:42:25,869 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 15:42:56] 2025-07-26 19:42:25,872 | INFO     | did not find any defunct processes belonging to 29216
[2025-07-26 15:42:56] 2025-07-26 19:42:25,874 | INFO     | did not find any defunct processes belonging to 29216
[2025-07-26 15:42:56] 2025-07-26 19:42:25,874 | INFO     | ready for new job
[2025-07-26 15:42:56] 2025-07-26 19:42:25,874 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 15:42:56] 2025-07-26 19:42:25,876 | INFO     | ***************************************
[2025-07-26 15:42:56] 2025-07-26 19:42:25,876 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 15:42:56] 2025-07-26 19:42:25,877 | INFO     | ***************************************
[2025-07-26 15:42:56] 2025-07-26 19:42:25,877 | INFO     | 
[2025-07-26 15:42:56] 2025-07-26 19:42:25,878 | INFO     | architecture information:
[2025-07-26 15:42:56] 2025-07-26 19:42:25,878 | INFO     | executing command: cat /etc/os-release
[2025-07-26 15:42:56] 2025-07-26 19:42:25,890 | INFO     | cat /etc/os-release:
[2025-07-26 15:42:56] NAME="CentOS Linux"
[2025-07-26 15:42:56] VERSION="7 (Core)"
[2025-07-26 15:42:56] ID="centos"
[2025-07-26 15:42:56] ID_LIKE="rhel fedora"
[2025-07-26 15:42:56] VERSION_ID="7"
[2025-07-26 15:42:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 15:42:56] ANSI_COLOR="0;31"
[2025-07-26 15:42:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 15:42:56] HOME_URL="https://www.centos.org/"
[2025-07-26 15:42:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 15:42:56] 
[2025-07-26 15:42:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 15:42:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 15:42:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 15:42:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 15:42:56] 
[2025-07-26 15:42:56] 2025-07-26 19:42:25,890 | INFO     | ***************************************
[2025-07-26 15:42:56] 2025-07-26 19:42:26,392 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 15:42:56] 2025-07-26 19:42:26,410 | INFO     | sufficient remaining disk space (32647413760 B)
[2025-07-26 15:42:56] 2025-07-26 19:42:26,410 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 15:42:56] 2025-07-26 19:42:26,411 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 15:42:56] 2025-07-26 19:42:26,411 | INFO     | update_server=False
[2025-07-26 15:42:56] 2025-07-26 19:42:26,411 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 15:42:56] 2025-07-26 19:42:26,411 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 15:42:56] 2025-07-26 19:42:26,411 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:42:56] 2025-07-26 19:42:26,412 | INFO     | aborting loop
[2025-07-26 15:42:56] 2025-07-26 19:42:26,436 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 15:42:56] 2025-07-26 19:42:26,463 | INFO     | all data control threads have been joined
[2025-07-26 15:42:56] 2025-07-26 19:42:26,756 | INFO     | all payload control threads have been joined
[2025-07-26 15:42:56] 2025-07-26 19:42:26,764 | INFO     | all job control threads have been joined
[2025-07-26 15:42:56] 2025-07-26 19:42:27,416 | INFO     | [job] retrieve thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:27,419 | INFO     | [job] job monitor thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:27,456 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:27,464 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:27,469 | INFO     | [data] control thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:27,762 | INFO     | [payload] control thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:27,769 | INFO     | [job] control thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:28,199 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:28,414 | INFO     | [data] copytool_out thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:28,545 | INFO     | [data] copytool_in thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:28,621 | INFO     | [payload] failed_post thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:28,710 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:28,828 | INFO     | [job] validate thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:28,947 | INFO     | [payload] validate_post thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:29,339 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 15:42:56] 2025-07-26 19:42:30,344 | INFO     | [job] queue monitor thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:30,441 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 15:42:56] 2025-07-26 19:42:31,153 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139641827211072)>', '<ExcThread(monitor, started 139641231488768)>']
[2025-07-26 15:42:56] 2025-07-26 19:42:36,176 | INFO     | all workflow threads have been joined
[2025-07-26 15:42:56] 2025-07-26 19:42:36,177 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 15:42:56] 2025-07-26 19:42:36,177 | INFO     | traces error code: 0
[2025-07-26 15:42:56] 2025-07-26 19:42:36,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 15:42:56] 2025-07-26 19:42:56,106 | INFO     | PID=22773 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-26 15:42:56] 2025-07-26 19:42:56,106 | INFO     | .. there are 2 such processes running
[2025-07-26 15:42:56] 2025-07-26 19:42:56,106 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 15:42:56] 2025-07-26 19:42:56,106 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 15:42:56] 2025-07-26 19:42:56,106 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 15:42:56] 2025-07-26 19:42:56,106 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 15:42:56] 2025-07-26 19:42:56,106 | INFO     | [monitor] control thread has ended
[2025-07-26 15:42:56] 2025-07-26 19:42:56,201 [wrapper] ==== pilot stdout END ====
[2025-07-26 15:42:56] 2025-07-26 19:42:56,203 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 15:42:56] 2025-07-26 19:42:56,205 [wrapper] pilotpid: 22773
[2025-07-26 15:42:56] 2025-07-26 19:42:56,208 [wrapper] Pilot exit status: 0
[2025-07-26 15:42:56] 2025-07-26 19:42:56,217 [wrapper] pandaids: 6745227355
[2025-07-26 15:42:56] 2025-07-26 19:42:56,246 [wrapper] cleanup supervisor_pilot  8527 22774
[2025-07-26 15:42:56] 2025-07-26 19:42:56,249 [wrapper] Test setup, not cleaning
[2025-07-26 15:42:56] 2025-07-26 19:42:56,251 [wrapper] apfmon messages muted
[2025-07-26 15:42:56] 2025-07-26 19:42:56,253 [wrapper] ==== wrapper stdout END ====
[2025-07-26 15:42:56] 2025-07-26 19:42:56,255 [wrapper] ==== wrapper stderr END ====
[2025-07-26 15:42:56]  *** Error codes and diagnostics ***
[2025-07-26 15:42:56]     "exeErrorCode": 0,
[2025-07-26 15:42:56]     "exeErrorDiag": "",
[2025-07-26 15:42:56]     "pilotErrorCode": 0,
[2025-07-26 15:42:56]     "pilotErrorDiag": "",
[2025-07-26 15:42:56]  *** Listing of results directory ***
[2025-07-26 15:42:56] total 440480
[2025-07-26 15:42:56] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 08:44 pilot3.tar.gz
[2025-07-26 15:42:56] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 09:05 queuedata.json
[2025-07-26 15:42:56] -rwx------ 1 boincer umatlas     36292 Jul 26 09:06 runpilot2-wrapper.sh
[2025-07-26 15:42:56] -rw-r--r-- 1 boincer umatlas       100 Jul 26 14:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 15:42:56] -rwxr-xr-x 1 boincer umatlas      7986 Jul 26 14:41 run_atlas
[2025-07-26 15:42:56] -rw-r--r-- 1 boincer umatlas       105 Jul 26 14:41 job.xml
[2025-07-26 15:42:56] -rw-r--r-- 2 boincer umatlas 233603879 Jul 26 14:41 EVNT.45743347._002197.pool.root.1
[2025-07-26 15:42:56] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 14:41 start_atlas.sh
[2025-07-26 15:42:56] drwxrwx--x 2 boincer umatlas      4096 Jul 26 14:41 shared
[2025-07-26 15:42:56] -rw-r--r-- 2 boincer umatlas    542901 Jul 26 14:41 input.tar.gz
[2025-07-26 15:42:56] -rw-r--r-- 1 boincer umatlas         0 Jul 26 14:41 boinc_lockfile
[2025-07-26 15:42:56] -rw-r--r-- 1 boincer umatlas      2563 Jul 26 14:41 pandaJob.out
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas    980125 Jul 26 14:41 agis_schedconf.cvmfs.json
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas   1593052 Jul 26 14:41 agis_ddmendpoints.agis.ALL.json
[2025-07-26 15:42:56] drwx------ 4 boincer umatlas      4096 Jul 26 14:41 pilot3
[2025-07-26 15:42:56] -rw-r--r-- 1 boincer umatlas      6050 Jul 26 15:38 init_data.xml
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas 212238376 Jul 26 15:41 HITS.45743349._038358.pool.root.1
[2025-07-26 15:42:56] -rw-r--r-- 1 boincer umatlas       529 Jul 26 15:41 boinc_task_state.xml
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas        95 Jul 26 15:42 pilot_heartbeat.json
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas      1047 Jul 26 15:42 memory_monitor_summary.json
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas    285708 Jul 26 15:42 log.45743349._038358.job.log.tgz.1
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas      7840 Jul 26 15:42 heartbeat.json
[2025-07-26 15:42:56] -rw-r--r-- 1 boincer umatlas      8192 Jul 26 15:42 boinc_mmap_file
[2025-07-26 15:42:56] -rw-r--r-- 1 boincer umatlas        27 Jul 26 15:42 wrapper_checkpoint.txt
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas       820 Jul 26 15:42 pilotlog.txt
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas    378450 Jul 26 15:42 log.45743349._038358.job.log.1
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas       357 Jul 26 15:42 output.list
[2025-07-26 15:42:56] -rw-r--r-- 1 boincer umatlas       620 Jul 26 15:42 runtime_log
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas    686080 Jul 26 15:42 result.tar.gz
[2025-07-26 15:42:56] -rw-r--r-- 1 boincer umatlas      8660 Jul 26 15:42 runtime_log.err
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas       658 Jul 26 15:42 jwbKDmlmtz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDCSLDmUZOPYo.diag
[2025-07-26 15:42:56] -rw-r--r-- 1 boincer umatlas     21255 Jul 26 15:42 stderr.txt
[2025-07-26 15:42:56] HITS file was successfully produced:
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas 212238376 Jul 26 15:41 shared/HITS.pool.root.1
[2025-07-26 15:42:56]  *** Contents of shared directory: ***
[2025-07-26 15:42:56] total 436624
[2025-07-26 15:42:56] -rw-r--r-- 2 boincer umatlas 233603879 Jul 26 14:41 ATLAS.root_0
[2025-07-26 15:42:56] -rw-r--r-- 2 boincer umatlas     15095 Jul 26 14:41 start_atlas.sh
[2025-07-26 15:42:56] -rw-r--r-- 2 boincer umatlas    542901 Jul 26 14:41 input.tar.gz
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas 212238376 Jul 26 15:41 HITS.pool.root.1
[2025-07-26 15:42:56] -rw------- 1 boincer umatlas    686080 Jul 26 15:42 result.tar.gz
15:42:58 (19175): run_atlas exited; CPU time 27209.308792
15:42:58 (19175): called boinc_finish(0)

</stderr_txt>
]]>

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