Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:52:59 (3959333): wrapper (7.7.26015): starting
15:52:59 (3959333): wrapper: running run_atlas (--nthreads 12)
[2025-07-26 15:52:59] Arguments: --nthreads 12
[2025-07-26 15:52:59] Threads: 12
[2025-07-26 15:52:59] Checking for CVMFS
[2025-07-26 15:52:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-26 15:52:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-26 15:52:59] Running cvmfs_config stat atlas.cern.ch
[2025-07-26 15:52:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-26 15:52:59] 2.13.0.0 1190652 17369 325696 148787 1 287 25330557 32935937 8546 16776704 0 31519482 99.729 55683712 29357 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-26 15:52:59] CVMFS is ok
[2025-07-26 15:52:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-26 15:52:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-26 15:52:59] Further information can be found at the LHC@home message board.
[2025-07-26 15:52:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-26 15:52:59] Checking for apptainer binary...
[2025-07-26 15:52:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-26 15:52:59] Running /usr/bin/apptainer --version
[2025-07-26 15:52:59] apptainer version 1.4.1-1.el9
[2025-07-26 15:52:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-26 15:52:59] c6-1-26-3.aglt2.org
[2025-07-26 15:52:59] apptainer works
[2025-07-26 15:52:59] Set ATHENA_PROC_NUMBER=12
[2025-07-26 15:52:59] Set ATHENA_CORE_NUMBER=12
[2025-07-26 15:52:59] Starting ATLAS job with PandaID=6745227379
[2025-07-26 15:52:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-26 17:03:27]  *** The last 200 lines of the pilot log: ***
[2025-07-26 17:03:27]  is_tar=False
[2025-07-26 17:03:27]  lfn=log.45743349._038381.job.log.tgz.1
[2025-07-26 17:03:27]  mtime=0
[2025-07-26 17:03:27]  protocol_id=None
[2025-07-26 17:03:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-26 17:03:27]  replicas=None
[2025-07-26 17:03:27]  scope=mc23_13p6TeV
[2025-07-26 17:03:27]  status=None
[2025-07-26 17:03:27]  status_code=0
[2025-07-26 17:03:27]  storage_token=
[2025-07-26 17:03:27]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745227379/log.45743349._038381.job.log.tgz.1
[2025-07-26 17:03:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5f/b8/log.45743349._038381.job.log.tgz.1
[2025-07-26 17:03:27]  workdir=None
[2025-07-26 17:03:27] ]
[2025-07-26 17:03:27] 2025-07-26 21:02:49,639 | INFO     | transferring file log.45743349._038381.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745227379/log.45743349._038381.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-26 17:03:27] 2025-07-26 21:02:49,639 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745227379/log.45743349._038381.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._038381.job
[2025-07-26 17:03:27] 2025-07-26 21:02:49,660 | INFO     | adding to output.list: log.45743349._038381.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5f/b8/log.45743349._038381.job.log.tg
[2025-07-26 17:03:27] 2025-07-26 21:02:49,661 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-26 17:03:27] 2025-07-26 21:02:49,661 | INFO     | summary of transferred files:
[2025-07-26 17:03:27] 2025-07-26 21:02:49,661 | INFO     |  -- lfn=log.45743349._038381.job.log.tgz.1, status_code=0, status=transferred
[2025-07-26 17:03:27] 2025-07-26 21:02:49,662 | INFO     | stage-out finished correctly
[2025-07-26 17:03:27] 2025-07-26 21:02:49,788 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-26 17:03:27] 2025-07-26 21:02:49,871 | INFO     | job 6745227379 has state=finished
[2025-07-26 17:03:27] 2025-07-26 21:02:49,872 | INFO     | preparing for final server update for job 6745227379 in state='finished'
[2025-07-26 17:03:27] 2025-07-26 21:02:49,872 | INFO     | this job has now completed (state=finished)
[2025-07-26 17:03:27] 2025-07-26 21:02:49,872 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-26 17:03:27] 2025-07-26 21:02:49,872 | INFO     | log transfer has been attempted: DONE
[2025-07-26 17:03:27] 2025-07-26 21:02:49,872 | INFO     | job 6745227379 has finished - writing final server update
[2025-07-26 17:03:27] 2025-07-26 21:02:49,873 | INFO     | total number of processed events: 400 (read)
[2025-07-26 17:03:27] 2025-07-26 21:02:49,873 | INFO     | executing command: lscpu
[2025-07-26 17:03:27] 2025-07-26 21:02:49,930 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-26 17:03:27] 2025-07-26 21:02:51,204 | INFO     | PID=3963098 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 17:03:27] 2025-07-26 21:02:51,205 | INFO     | .. there are 12 such processes running
[2025-07-26 17:03:27] 2025-07-26 21:02:53,517 | WARNING  | process 3969981 can no longer be monitored (due to stat problems) - aborting
[2025-07-26 17:03:27] 2025-07-26 21:02:53,518 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745227379/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 17:03:27] 2025-07-26 21:02:53,730 | INFO     | number of running child processes to parent process 3969981: 1
[2025-07-26 17:03:27] 2025-07-26 21:02:53,730 | INFO     | maximum number of monitored processes: 6
[2025-07-26 17:03:27] 2025-07-26 21:02:54,239 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-26 17:03:27] 2025-07-26 21:02:54,242 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2602.686607142857
[2025-07-26 17:03:27] 2025-07-26 21:02:54,264 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745227379/memory_monitor_summary.json (trf name=prmon)
[2025-07-26 17:03:27] 2025-07-26 21:02:54,265 | INFO     | extracted standard info from prmon json
[2025-07-26 17:03:27] 2025-07-26 21:02:54,265 | INFO     | extracted standard memory fields from prmon json
[2025-07-26 17:03:27] 2025-07-26 21:02:54,265 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-26 17:03:27] 2025-07-26 21:02:54,265 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-26 17:03:27] 2025-07-26 21:02:54,265 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-26 17:03:27] 2025-07-26 21:02:54,267 | INFO     | fitting pss+swap vs Time
[2025-07-26 17:03:27] 2025-07-26 21:02:54,267 | INFO     | sum of square deviations: 70364110.0
[2025-07-26 17:03:27] 2025-07-26 21:02:54,267 | INFO     | sum of deviations: -7137477752.000002
[2025-07-26 17:03:27] 2025-07-26 21:02:54,268 | INFO     | mean x: 1753561756.0
[2025-07-26 17:03:27] 2025-07-26 21:02:54,268 | INFO     | mean y: 2498438.344262295
[2025-07-26 17:03:27] 2025-07-26 21:02:54,268 | INFO     | -- intersect: 177877384089.68066
[2025-07-26 17:03:27] 2025-07-26 21:02:54,268 | INFO     | intersect: 177877384089.68066
[2025-07-26 17:03:27] 2025-07-26 21:02:54,268 | INFO     | chi2: 0.12343172837305028
[2025-07-26 17:03:27] 2025-07-26 21:02:54,268 | INFO     | -- intersect: 177877384089.68066
[2025-07-26 17:03:27] 2025-07-26 21:02:54,268 | INFO     | current memory leak: -101.44 B/s (using 61 data points, chi2=0.12)
[2025-07-26 17:03:27] 2025-07-26 21:02:54,268 | INFO     | could have reported an average CPU frequency of 2650 MHz (6 samples)
[2025-07-26 17:03:27] 2025-07-26 21:02:54,269 | INFO     | ..............................
[2025-07-26 17:03:27] 2025-07-26 21:02:54,269 | INFO     | . Timing measurements:
[2025-07-26 17:03:27] 2025-07-26 21:02:54,269 | INFO     | . get job = 0 s
[2025-07-26 17:03:27] 2025-07-26 21:02:54,269 | INFO     | . initial setup = 2 s
[2025-07-26 17:03:27] 2025-07-26 21:02:54,269 | INFO     | . payload setup = 7 s
[2025-07-26 17:03:27] 2025-07-26 21:02:54,269 | INFO     | . stage-in = 0 s
[2025-07-26 17:03:27] 2025-07-26 21:02:54,269 | INFO     | . payload execution = 4148 s
[2025-07-26 17:03:27] 2025-07-26 21:02:54,269 | INFO     | . stage-out = 0 s
[2025-07-26 17:03:27] 2025-07-26 21:02:54,269 | INFO     | . log creation = 0 s
[2025-07-26 17:03:27] 2025-07-26 21:02:54,269 | INFO     | ..............................
[2025-07-26 17:03:27] 2025-07-26 21:02:54,812 | INFO     | 
[2025-07-26 17:03:27] 2025-07-26 21:02:54,812 | INFO     | job summary report
[2025-07-26 17:03:27] 2025-07-26 21:02:54,812 | INFO     | --------------------------------------------------
[2025-07-26 17:03:27] 2025-07-26 21:02:54,812 | INFO     | PanDA job id: 6745227379
[2025-07-26 17:03:27] 2025-07-26 21:02:54,812 | INFO     | task id: 45743349
[2025-07-26 17:03:27] 2025-07-26 21:02:54,812 | INFO     | errors: (none)
[2025-07-26 17:03:27] 2025-07-26 21:02:54,812 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-26 17:03:27] 2025-07-26 21:02:54,812 | INFO     | pilot state: finished 
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | transexitcode: 0
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | exeerrorcode: 0
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | exeerrordiag: 
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | exitcode: 0
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | exitmsg: OK
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | cpuconsumptiontime: 44593 s
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | nevents: 400
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | neventsw: 0
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | pid: 3969981
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | pgrp: 3969981
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | corecount: 12
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | event service: False
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | sizes: {0: 2397302, 1: 2397501, 6: 2397763, 12: 2397791, 4160: 2423661, 4162: 2432843, 4166: 2432981}
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | --------------------------------------------------
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | 
[2025-07-26 17:03:27] 2025-07-26 21:02:54,813 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-26 17:03:27] 2025-07-26 21:02:54,833 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,834 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,834 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,834 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,834 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,834 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,834 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,834 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,834 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,834 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,835 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,835 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,835 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,835 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,835 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,835 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,835 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,835 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-26 17:03:27] 2025-07-26 21:02:54,835 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,835 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-26 17:03:27] 2025-07-26 21:02:54,836 | INFO     | job 6745227379 has completed (purged errors)
[2025-07-26 17:03:27] 2025-07-26 21:02:54,836 | INFO     | overall cleanup function is called
[2025-07-26 17:03:27] 2025-07-26 21:02:55,844 | INFO     | --- collectZombieJob: --- 10, [3969981]
[2025-07-26 17:03:27] 2025-07-26 21:02:55,845 | INFO     | zombie collector waiting for pid 3969981
[2025-07-26 17:03:27] 2025-07-26 21:02:55,845 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-26 17:03:27] 2025-07-26 21:02:55,845 | INFO     | collected zombie processes
[2025-07-26 17:03:27] 2025-07-26 21:02:55,845 | INFO     | will attempt to kill all subprocesses of pid=3969981
[2025-07-26 17:03:27] 2025-07-26 21:02:56,073 | INFO     | process IDs to be killed: [3969981] (in reverse order)
[2025-07-26 17:03:27] 2025-07-26 21:02:56,149 | WARNING  | found no corresponding commands to process id(s)
[2025-07-26 17:03:27] 2025-07-26 21:02:56,149 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-26 17:03:27] 2025-07-26 21:02:56,159 | INFO     | did not find any defunct processes belonging to 3969981
[2025-07-26 17:03:27] 2025-07-26 21:02:56,168 | INFO     | did not find any defunct processes belonging to 3969981
[2025-07-26 17:03:27] 2025-07-26 21:02:56,169 | INFO     | ready for new job
[2025-07-26 17:03:27] 2025-07-26 21:02:56,169 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-26 17:03:27] 2025-07-26 21:02:56,170 | INFO     | ***************************************
[2025-07-26 17:03:27] 2025-07-26 21:02:56,170 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-26 17:03:27] 2025-07-26 21:02:56,171 | INFO     | ***************************************
[2025-07-26 17:03:27] 2025-07-26 21:02:56,171 | INFO     | 
[2025-07-26 17:03:27] 2025-07-26 21:02:56,187 | INFO     | architecture information:
[2025-07-26 17:03:27] 2025-07-26 21:02:56,187 | INFO     | executing command: cat /etc/os-release
[2025-07-26 17:03:27] 2025-07-26 21:02:56,201 | INFO     | cat /etc/os-release:
[2025-07-26 17:03:27] NAME="CentOS Linux"
[2025-07-26 17:03:27] VERSION="7 (Core)"
[2025-07-26 17:03:27] ID="centos"
[2025-07-26 17:03:27] ID_LIKE="rhel fedora"
[2025-07-26 17:03:27] VERSION_ID="7"
[2025-07-26 17:03:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-26 17:03:27] ANSI_COLOR="0;31"
[2025-07-26 17:03:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-26 17:03:27] HOME_URL="https://www.centos.org/"
[2025-07-26 17:03:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-26 17:03:27] 
[2025-07-26 17:03:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-26 17:03:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-26 17:03:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-26 17:03:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-26 17:03:27] 
[2025-07-26 17:03:27] 2025-07-26 21:02:56,202 | INFO     | ***************************************
[2025-07-26 17:03:27] 2025-07-26 21:02:56,704 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-26 17:03:27] 2025-07-26 21:02:56,718 | INFO     | sufficient remaining disk space (76275515392 B)
[2025-07-26 17:03:27] 2025-07-26 21:02:56,719 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-26 17:03:27] 2025-07-26 21:02:56,719 | INFO     | current server update state: UPDATING_FINAL
[2025-07-26 17:03:27] 2025-07-26 21:02:56,719 | INFO     | update_server=False
[2025-07-26 17:03:27] 2025-07-26 21:02:56,719 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-26 17:03:27] 2025-07-26 21:02:56,720 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-26 17:03:27] 2025-07-26 21:02:57,238 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-26 17:03:27] 2025-07-26 21:02:57,238 | INFO     | aborting loop
[2025-07-26 17:03:27] 2025-07-26 21:02:57,367 | INFO     | all data control threads have been joined
[2025-07-26 17:03:27] 2025-07-26 21:02:57,724 | INFO     | [job] retrieve thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:02:57,798 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-26 17:03:27] 2025-07-26 21:02:57,807 | INFO     | [payload] validate_pre thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:02:58,059 | INFO     | all job control threads have been joined
[2025-07-26 17:03:27] 2025-07-26 21:02:58,162 | INFO     | all payload control threads have been joined
[2025-07-26 17:03:27] 2025-07-26 21:02:58,197 | INFO     | [data] copytool_in thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:02:58,243 | INFO     | [job] job monitor thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:02:58,253 | INFO     | [payload] validate_post thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:02:58,337 | INFO     | [payload] failed_post thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:02:58,366 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:02:58,372 | INFO     | [data] control thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:02:58,873 | INFO     | [job] validate thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:02:59,064 | INFO     | [job] control thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:02:59,131 | INFO     | [job] create_data_payload thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:02:59,131 | INFO     | [payload] execute_payloads thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:02:59,167 | INFO     | [payload] control thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:02:59,364 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-26 17:03:27] 2025-07-26 21:02:59,803 | INFO     | [data] copytool_out thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:03:00,369 | INFO     | [job] queue monitor thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:03:00,725 | INFO     | [data] queue_monitor thread has finished
[2025-07-26 17:03:27] 2025-07-26 21:03:02,664 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140176611092288)>', '<ExcThread(monitor, started 140175980095232)>']
[2025-07-26 17:03:27] 2025-07-26 21:03:07,689 | INFO     | all workflow threads have been joined
[2025-07-26 17:03:27] 2025-07-26 21:03:07,689 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-26 17:03:27] 2025-07-26 21:03:07,689 | INFO     | traces error code: 0
[2025-07-26 17:03:27] 2025-07-26 21:03:07,690 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-26 17:03:27] 2025-07-26 21:03:27,643 | INFO     | PID=3963098 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-26 17:03:27] 2025-07-26 21:03:27,644 | INFO     | .. there are 12 such processes running
[2025-07-26 17:03:27] 2025-07-26 21:03:27,645 | INFO     | found 0 job(s) in 20 queues
[2025-07-26 17:03:27] 2025-07-26 21:03:27,645 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-26 17:03:27] 2025-07-26 21:03:27,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-26 17:03:27] 2025-07-26 21:03:27,646 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-26 17:03:27] 2025-07-26 21:03:27,646 | INFO     | [monitor] control thread has ended
[2025-07-26 17:03:27] 2025-07-26 21:03:27,825 [wrapper] ==== pilot stdout END ====
[2025-07-26 17:03:27] 2025-07-26 21:03:27,830 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-26 17:03:27] 2025-07-26 21:03:27,832 [wrapper] pilotpid: 3963098
[2025-07-26 17:03:27] 2025-07-26 21:03:27,836 [wrapper] Pilot exit status: 0
[2025-07-26 17:03:27] 2025-07-26 21:03:27,849 [wrapper] pandaids: 6745227379
[2025-07-26 17:03:27] 2025-07-26 21:03:27,909 [wrapper] cleanup supervisor_pilot 4103723 3963099
[2025-07-26 17:03:27] 2025-07-26 21:03:27,913 [wrapper] Test setup, not cleaning
[2025-07-26 17:03:27] 2025-07-26 21:03:27,915 [wrapper] apfmon messages muted
[2025-07-26 17:03:27] 2025-07-26 21:03:27,917 [wrapper] ==== wrapper stdout END ====
[2025-07-26 17:03:27] 2025-07-26 21:03:27,919 [wrapper] ==== wrapper stderr END ====
[2025-07-26 17:03:27]  *** Error codes and diagnostics ***
[2025-07-26 17:03:27]     "exeErrorCode": 0,
[2025-07-26 17:03:27]     "exeErrorDiag": "",
[2025-07-26 17:03:27]     "pilotErrorCode": 0,
[2025-07-26 17:03:27]     "pilotErrorDiag": "",
[2025-07-26 17:03:27]  *** Listing of results directory ***
[2025-07-26 17:03:27] total 431184
[2025-07-26 17:03:27] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 09:10 queuedata.json
[2025-07-26 17:03:27] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 09:10 pilot3.tar.gz
[2025-07-26 17:03:27] -rwx------. 1 boincer umatlas     36292 Jul 26 09:10 runpilot2-wrapper.sh
[2025-07-26 17:03:27] -rw-r--r--. 1 boincer umatlas       100 Jul 26 15:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-26 17:03:27] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 26 15:52 run_atlas
[2025-07-26 17:03:27] -rw-r--r--. 1 boincer umatlas       105 Jul 26 15:52 job.xml
[2025-07-26 17:03:27] -rw-r--r--. 2 boincer umatlas 230083185 Jul 26 15:52 EVNT.45743347._002198.pool.root.1
[2025-07-26 17:03:27] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 15:52 start_atlas.sh
[2025-07-26 17:03:27] drwxrwx--x. 2 boincer umatlas      4096 Jul 26 15:52 shared
[2025-07-26 17:03:27] -rw-r--r--. 2 boincer umatlas    542892 Jul 26 15:52 input.tar.gz
[2025-07-26 17:03:27] -rw-r--r--. 1 boincer umatlas         0 Jul 26 15:52 boinc_lockfile
[2025-07-26 17:03:27] -rw-r--r--. 1 boincer umatlas      2562 Jul 26 15:52 pandaJob.out
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas    980125 Jul 26 15:53 agis_schedconf.cvmfs.json
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas   1593052 Jul 26 15:53 agis_ddmendpoints.agis.ALL.json
[2025-07-26 17:03:27] drwx------. 4 boincer umatlas      4096 Jul 26 15:53 pilot3
[2025-07-26 17:03:27] -rw-r--r--. 1 boincer umatlas      6842 Jul 26 17:00 init_data.xml
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas 206032696 Jul 26 17:02 HITS.45743349._038381.pool.root.1
[2025-07-26 17:03:27] -rw-r--r--. 1 boincer umatlas       529 Jul 26 17:02 boinc_task_state.xml
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas        95 Jul 26 17:02 pilot_heartbeat.json
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas      1035 Jul 26 17:02 memory_monitor_summary.json
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas    347088 Jul 26 17:02 log.45743349._038381.job.log.tgz.1
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas      7825 Jul 26 17:02 heartbeat.json
[2025-07-26 17:03:27] -rw-r--r--. 1 boincer umatlas      8192 Jul 26 17:03 boinc_mmap_file
[2025-07-26 17:03:27] -rw-r--r--. 1 boincer umatlas        27 Jul 26 17:03 wrapper_checkpoint.txt
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas       823 Jul 26 17:03 pilotlog.txt
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas    423574 Jul 26 17:03 log.45743349._038381.job.log.1
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas       357 Jul 26 17:03 output.list
[2025-07-26 17:03:27] -rw-r--r--. 1 boincer umatlas       620 Jul 26 17:03 runtime_log
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas    788480 Jul 26 17:03 result.tar.gz
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas       653 Jul 26 17:03 TuLMDmfqtz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmBo0KDm2GrVtn.diag
[2025-07-26 17:03:27] -rw-r--r--. 1 boincer umatlas      8667 Jul 26 17:03 runtime_log.err
[2025-07-26 17:03:27] -rw-r--r--. 1 boincer umatlas     21676 Jul 26 17:03 stderr.txt
[2025-07-26 17:03:27] HITS file was successfully produced:
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas 206032696 Jul 26 17:02 shared/HITS.pool.root.1
[2025-07-26 17:03:27]  *** Contents of shared directory: ***
[2025-07-26 17:03:27] total 427224
[2025-07-26 17:03:27] -rw-r--r--. 2 boincer umatlas 230083185 Jul 26 15:52 ATLAS.root_0
[2025-07-26 17:03:27] -rw-r--r--. 2 boincer umatlas     15095 Jul 26 15:52 start_atlas.sh
[2025-07-26 17:03:27] -rw-r--r--. 2 boincer umatlas    542892 Jul 26 15:52 input.tar.gz
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas 206032696 Jul 26 17:02 HITS.pool.root.1
[2025-07-26 17:03:27] -rw-------. 1 boincer umatlas    788480 Jul 26 17:03 result.tar.gz
17:03:29 (3959333): run_atlas exited; CPU time 44670.642030
17:03:29 (3959333): called boinc_finish(0)

</stderr_txt>
]]>

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